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Dernière mise à jour : Mai 2018

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Inra Bordeaux-Aquitaine
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2014-2019

Scientific publications - UMR NuMeA - 2014-2019

20192018 - 2017 - 2016 - 2015 - 2014

2019

  1. Alami-Durante, H.; Cluzeaud, M.; Bazin, D.; Schrama, J.W.; Saravanan, S.; Geurden, I. 2019. Muscle growth mechanisms in response to isoenergetic changes in dietary non-protein energy source at low and high protein levels in juvenile rainbow trout. Comparative Biochemsitry and Physiology, Part A, 230 : 91-99
  2. Cardona, E.; Bugeon, J.; Guivarc'h, F.; Goardon, L.; Panserat, S.; Labbé, L.; Corraze, G.; Skiba-Cassy, S.; Bobe, J. 2019.Positive impact of moderate food restriction on reproductive success of the rainbow trout Oncorhynchus mykiss. Aquaculture, 502 : 280-288
  3. Jaeger, C.; Foucard, P.; Tocqueville, A.; Nahon, S.; Aubin, J. 2019. Mass balanced based LCA of a common carp-lettuce aquaponics system. Aquacultural Engineering, 84 : 29-41
  4. Li, M.; Callier, M.D.; Blancheton, J.P.; Galès, A.; Nahon, S.; Triplet, S.; Geoffroy, T.; Menniti, C.; Fouilland, E.; Roque d'Orbcastel, E. 2019. Bioremediation of fishpond effluent and production of microalgae for an oyster farm in an innovative recirculating integrated multi-trophic aquaculture system. Aquaculture, 504 : 314-325
  5. Marandel, L.; Kostyniuk, D.J.; Best, C.; Forbes, J.L.I.; Liu, J.; Panserat, S.; Mennigen, J.A. 2019. Pck-ing up steam: widening the salmonid gluconeogenic gene duplication trail. Gene, 698 : 129-140
  6. Panserat, S.; Marandel, L.; Seiliez, I.; Skiba-Cassy, S. 2019. New insights in intermediary metabolism for a better understanding of nutrition in teleosts. Annual Review of Animal Biosciences, 7 : 195-220
  7. Roques, S.; Deborde, C.; Richard, N.;Skiba-Cassy, S.; Moing, A.; Fauconneau, B. Metabolomics and fish nutrition: a review in the context of sustainable feed development. Reviews in Aquaculture, online first
  8. Seite, S.; Pioche, T.; Ory, N.; Plagnes-Juan, E.; Panserat, S.; Seiliez, I. 2019. The autophagic flux inhibitor bafilomycine A1 affects the expression of intermediary metabolism-related genes in trout hepatocytes. Frontiers in Physiology, 10 : 263
  9. Zambonino-Infante, J.L.; Panserat, S.; Servili, A.; Mouchel, O.; Madec, L.; Mazurais, D. 2019. Nutritional programming by dietary carbohydrates in European sea bass larvae: not always what expected at juvenile stage. Aquaculture, 501 : 441-447
  10. Zhu, T.; Corraze, G.; Plagnes-Juan, E.; Montfort, J.; Bobe, J.; Quillet, E.; Dupont-Nivet, M.; Skiba-Cassy, S. 2019. MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines. Aquaculture, 498 : 132-142

2018

  1. Alami-Durante, H.; Bazin, D.; Cluzeaud, M.; Fontagné-Dicharry, S.; Kaushik, S.; Geurden, I. 2018. Effect of dietary methionine level on muscle growth mechanisms in juvenile rainbow trout (Oncorhynchus mykiss). Aquaculture, 483 : 273-285
  2. Antony Jesu Prabhu, P.; Schrama, J.W.; Fontagné-Dicharry, S.; Mariojouls, C.; Surget, A.; Bueno, M.; Geurden, I.; Kaushik, S.J. 2018. Evaluating dietary supply of microminerals as a premix in a complete plant ingredient-based diet to juvenile rainbow trout (Oncorhynchus mykiss). Aquaculture Nutrition, 24 (1) : 539-547
  3. Araujo Lage, L.P.; Sérusier, M.; Weissman, D.; Putrino, S.M.; Baron, F.; Guyonvarch, A.; Tournat, M.; Nunes, A.J.P.; Panserat, S. 2018. Metabolic programming in juveniles of the whiteleg shrimp (Litopenaeus vannamei) linked to an early feed restriction at the post-larval stage. Aquaculture, 495 : 328-338
  4. Arevalo, E.; Panserat, S.; Seiliez, I.; Larranaga, A.; Bardonnet, A. 2018. Effect of food shortage and temperature on age 0+ salmonids: a contribution to predict the effects of climate change. Journal of Fish Biology, 92 (3) : 642-652
  5. Best, C.; Ikert, H.; Kostyniuk, D.; Craig, P.M.; Navarro-Martin, L.; Marandel, L.; Mennigen, J.A. 2018. Epigenetics in teleost fish: from molecular mechanisms to physiological phenotypes. Comparative Biochemistry and Physiology. Part B, Biochemistry and Molecular Biology, 224 : 210-244
  6. Betancor, M.B.; Olsen, R.E.; Marandel, L.; Skulstad, O.F.; Madaro, A.; Tocher, D.R.; Panserat, S. 2018. Impact of dietary carbohydrate/protein ration on hepatic metabolism in land-locked Atlantic salmon (Salmo salar L.) Frontiers in Physiology, 9 : 1751
  7. Boonanuntanasarn, S.; Jangprai, A.; Kumkhong, S.; Plagnes-Juan, E.; Veron, V.; Burel, C.; Marandel, L.; Panserat, S. 2018. Adaptation of Nile tilapia (Oreochromis niloticus) to different levels of dietary carbohydrates: new insights from a long term nutritional study. Aquaculture, 496 : 58-65
  8. Boonanuntanasarn, S.; Kumkhong, S.; Yoohat, K.; Plagnes-Juan, E.; Burel, C.; Marandel, L.; Panserat, S. 2018. Molecular responses of Nile tilapia (Oreochromis niloticus) to different levels of dietary carbohydrates. Aquaculture, 482 : 117-123
  9. Borey, M., Paroissin, C., Quillet, E., Terrier, F., Maunas, P., Burel, C., Lauga. 2018. Acute hypoxia reveals diverse adaptation strategies to fully substituted plant-based diet in isogenic lines of the carnivorous rainbow trout. Aquaculture, 490, 288-296
  10. Callet, T.; Dupont-Nivet, M.; Cluzeaud, M.; Jaffrezic, F.; Laloë, D.; Kerneis, T.; Labbé, T.; Quillet, E.; Geurden, I.; Mazurais, D.; Skiba-Cassy, S.; Médale, F. 2018. Detection of new pathways involved in the acceptance and the utilisation of a plant-based diet in isogenic lines of rainbow trout fry. Plos One, 13 (7) : 0201462
  11. Castro, C.; Couto, A.; Diogenes, A.F.; Corraze, G.; Panserat, S.; Serra, C.R.; Oliva-Teles,A. 2018.Vegetable oil and carbohydrate rich diets marginally affected intestine histomorphology, digestive enzymes activities and gut microbiota of gilthead sea bream juveniles. Fish Physiology Biochemistry, online first
  12. Castro, C.; Peréz-Jiménez, A.; Coutinho, F.; Corraze, G.; Panserat, S.; Peres, H.; Oliva Teles, A.; Enes, P. 2018. Nutritional history does not modulate hepatic oxidative status of European sea bass (Dicentrarchus labrax) submitted to handling stress. Fish Physiology and Biochemistry, 44 (3) : 911-918
  13. Even, M.; Davail, S.; Rey, M.; Tavernier, A.; Houssier, M.; Bernadet, M.D.; Gontier, K.; Pascal, G.; Ricaud, K. 2018. Probiotics starins modulate gut microbiota and lipid metabolism in mule ducks. Open Microbiology Journal, 12 (1) : 71-93
  14. Fontagné-Dicharry, S.; Larroquet, L.; Dias, K.; Cluzeaud, M.; Héraud, C.; Corlay, D. 2018. Effects of dietary oxidized fish oil supplementation on oxidative stress and antioxidant defense system in juvenile rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology, 74 : 43-51
  15. Gatesoupe, F.J.; Fauconneau, B.; Deborde, C.; Madji Hounoum, B.; Jacob, D.; Moing, A.; Corraze, G.; Médale, F. 2018. Intestinal microbiota in rainbow trout, Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: a correlative approach with some plasma metabolites. Aquaculture Nutrition, 24(5) : 1563-1576
  16. Grigorakis, K.; Kogiannou, D.; Corraze, G.; Perez-Sanchez, J.; Adorjan, A.;Sandor, J.Z. 2018. Impact of diets containing plant raw materials as fish meal and fish oil replacement on rainbow trout (Oncorhynchus mykiss), gilthead sea bream (Sparus aurata), and common carp (Cyprinus carpio) freshness. Journal of Food Quality, 2018 : 1717465
  17. Hu, H.; Liu, J.; Plagnes-Juan, E.; Herman, A.; Leguen, I.; Goardon, L.; Geurden, I.; Panserat, S.; Marandel, L. 2018. Programming of the glucose metabolism in rainbow trout juveniles after chronic hypoxia at hatching stage combined with a high dietary carbohydrate : protein ratios intake at first-feeding. Aquaculture, 488 : 1-8
  18. Knudsen, C.; Bonnefont, C.; Fortun-lamothe, L.; Ricaud, K.; Fernandez, X. 2018. L'engraissement spontané du foie chez les palmipèdes : état des lieux et perspectives de recherche. INRA Productions Animales, 31 (2) : 117-130
  19. Lazzarotto, V.; Médale, F.; Larroquet, L.; Corraze, G. 2018. Long-term dietary replacement of fishmeal and fish oil in diets for rainbow trout (Oncorhynchus mykiss): effects on growth, whole body fatty acids and intestinal and hepatic gene expression. Plos One, 13 (1) : e0190730
  20. Leplat, J.; Mangin, P.; Falchetto, L.; Héraud, C.; Gautheron, E.; Steinberg, C. 2018. Visual assessment and computer-assisted image analysis of Fusarium head blight in the field to predict mycotoxin accumulation in wheat grains. European journal of Plant Pathology, 150 (4) : 1065-1081
  21. Lescat, L.; Herpin, A.; Mourot, B.; Véron, V.; Guiguen, Y.; Bobe, J.; Seiliez, I. 2018. CMA restricted to mammals and birds: myths or reality ? Autophagy, 14 (7): 1267-1270
  22. Li, T.; Qi, M.; Gatesoupe, F.J.; Tian, D.; Jin, W.; Li, J.;Lin, Q.; Wu, S.; Li, H. 2018. Adaptation to fasting in crucian carp (Carassius auratus): gut microbiota and its correlative relationship with immune function. Microbial Ecology, online first
  23. Magnoni, L.J.; Eding, E.; Leguen, I.; Prunet, P.; Geurden, I.; Ozorio, R.O.A.; Schrama, J.W. 2018. Hypoxia, but not an electrolyte-imbalanced diet, reduces feed intake, growth and oxygen consumption in rainbow trout (Oncorhynchus mykiss). Scientific Reports, 8 (1) : 4965
  24. Marandel, L.; Gaudin, P.; Guéraud, F.; Glise, S.; Herman, A.; Plagnes-Juan, E.; Véron, V.; Panserat, S.; Labonne, J. 2018. A reassessment of the carnivorous status of salmonids : hepatic glucokinase is expressed in wild fish in Kerguelen islands. Science of the Total Environment, 612 : 276-285
  25. Ricaud, K.; Rey, M.; Plagnes-Huan, E.; Larroquet, L.; Even, M.; Quillet, E.; Skiba-Cassy, S.; Panserat, S. 2018. Composition of intestinal microbiota in two lines of rainbow trout (Oncorhynchus mykiss) divergently selected for muscle fat content. The Open Microbiology Journal, 12 : 308-320
  26. Roques, S.; Deborde, C.; Richard, N.; Sergent, L.; Kurz, F.; Skiba-Cassy, S.; Fauconneau, B.; Moing, A. 2018. Characterizing alternative feeds for rainbow trout (O-mykiss) by H-1 NMR metabolomics. Metabolomics, 14 : 155
  27. Schrama, J.W.; Haidar, M.N.; Geurden, I.; Heinsbroek, L.T.N.; Kaushik, S.J. 2018. Energy efficiency of digestible protein, fat and carbohydrate utilisation for growth in rainbow trout and Nile tilapia. British Journal of Nutrition, 119 (7) : 782-791
  28. Seite, S., Mourier, A., Camougrand, Salin, B., Figueiredo-Silva, A. C., Fontagne-Dicharry, S., Panserat, S., Seiliez, I. 2018. Dietary methionine deficiency affects oxidative status, mitochondrial integrity and mitophagy in the liver of rainbow trout (Oncorhynchus mykiss). Scientific Reports, 8 (1), 10651
  29. Song, X.; Marandel, L.; Dupont-Nivet, M.; Quillet, E.; Geurden, I.; Panserat, S. 2018. Hepatic glucose metabolic responses to digestible dietary carbohydrates in two isogenic lines of rainbow trout. Biology Open, 7  : bio032896
  30. Song, X.; Marandel, L.; Skiba-Cassy, S.; Corraze, G.; Dupont-Nivet, M.; Quillet, E.; Geurden, I.; Panserat, S. 2018. Regulation by dietary carbohydrates of intermediary metabolism in liver and muscle of two isogenic lines of rainbow trout. Frontiers in Physiology, 9 : 1579
  31. Tavernier, A.; Ricaud, K.; Bernadet, M.D.; Gontier, K.; Davail, S. 2018. Pre- and post-prandial expression of genes involved in lipid metabolism at the end of the overfeeding period of mule ducks. Molecular and Cellular Biochemistry, 438 (1-2) : 111-121
  32. Vadstein, O.; Attramadal, K.J.K.; Bakke, I.; Forberg, T.; Olsen, Y.; Verdegem, M.; Giatsis, C.; Skjermo, J.; Aasen, I.M.; Gatesoupe, F.J.; Dierckens, K.; Sorgeloos, P.; Bossier, P. 2018. Managing the microbial community of marine fish larvae: a holistic perspective for larviculture. Frontiers in Microbiology, 9 : 1820
  33. Veron, V.; Marandel, L.; Liu, J.; Velez, E.J.; Lepais, O.; Panserat, S.; Skiba, S.; Seiliez, I. 2018. DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming. BMC Genomics, 19 (1) : 677
  34. Wu, Z.B.; Gatesoupe, F. J.; Li, T.T.; Wang, X.H.; Zhang, Q.Q.; Feng, D.Y.; Feng, Y.Q.; Chen, H.; Li, A.H. 2018. Significant improvement of intestinal microbiota of gibel carp (Carassius auratus gibelio) after traditional Chinese medicine feeding. Journal of Applied Microbiology, 124 (3), 829-841
  35. Zhu, T.; Corraze, G.; Plagnes-Juan, E.; Quillet, E.; Dupont-Nivet, M.; Skiba-Cassy, S. 2018. Regulation of genes related to cholesterol metabolism in rainbow trout (Oncorhynchus mykiss) fed a plant-based diet. American Journal of Physiology Regulatory Integrative Comparative Physiology, 314 (1) : R58-R70
  36. Zhu, T.; Corraze, G.; Plagnes-Juan, E.; Skiba-Cassy, S. 2018. Circulating miRNA measurements are reflective of cholesterol-based changes in rainbow trout (Oncorhynchus mykiss). PLoS ONE, 13 (11) : e0206727

2017

  1. Antony Jesu Prabhu, P.; Kaushik, S.J.; Geurden, I.; Stouten, T.; Fontagné-Dicharry, S.; Véron, V.; Mariojouls, C.; Verreth, J.A.J.; Eding, E.H.; Schrama, J.W. 2017. Water exchange rate in RAS and dietary inclusion of micro-minerals influence growth, body composition and metabolism in common carp. Aquaculture, 471 : 8-18
  2. Araujo Lage, L.P.; Plagnes-Juan, E.; Marques Putrino, S.; Baron, ,F.; Weissman, D.; Guyonvarch, A.; Brugger, R.; Nunes, A.J.P.; Panserat, S. 2017. Ontogenesis of metabolic gene expression in whiteleg shrimp (Litopenaeus vannamei): New molecular tools for programming in the future. Aquaculture, 479 : 142-149
  3. Benitez-Santana, T.; Simion, M.; Corraze, G.; Médale, F.; Joly, J.S. 2017. Effect of nutrient availability on progenitor cells in zebrafish (Danio rerio). Developmental Neurobiology, 77 (1) : 26-38
  4. Biga, P.R.; Latimer, M.N.; Froehlich, J.M.; Gabillard, J.M.; Seiliez, I. 2017. Distribution of H3K27me3, H3K9me3, and H3K4me3 along autophagy-related genes highly expressed in starved zebrafish myotubes. Biology Open, 6 : 1720-1725
  5. Bolliet, V.; Labonne, J.; Olazcuaga, L.; Panserat, S.; Seiliez, I. 2017. Modeling of autophagy-related gene expression dynamics during long term fasting in European eel (Anguilla anguilla). Scientific Reports, 7 : 17896
  6. Callet, T.; Médale, F.; Larroquet, L.; Surget, A.; Aguirre, P.; Kerneis, T.; Labbé, L.; Quillet, E.; Geurden, I.; Skiba-Cassy, S.; Dupont-Nivet, M. 2017. Successful selection of rainbow trout (Oncorhynchus mykiss) on their ability to grow with a diet completely devoid of fishmeal and fish oil, and correlated changes in nutritional traits. Plos One, 12 (10) : e0186705
  7. Fontagné-Dicharry, S.; Alami-Durante, H.; Aragão, C.; Kaushik, S.J.; Geurden, I. 2017. Parental and early-feeding effects of dietary methionine in rainbow trout (Oncorhynchus mykiss). Aquaculture, 469 : 16-27
  8. Godin, S.; Bouzas-Ramos, D.; Fontagné-Dicharry, S.; Bouyssière, B.; Bueno, M. 2017. Deproteinization assessment using isotopically enriched compounds to trace the coprecipitation of low-molecular-weight selenium species with proteins. Analytical Biochemistry, 530 : 9-16
  9. Kamalam, B. S., Médale, F., Panserat, S. 2017. Utilisation of dietary carbohydrates in farmed fishes: New insights on influencing factors, biological limitations and future strategies. Aquaculture, 467: 3-27
  10. Latimer, M., Sabin, N., Le Cam, A., Seiliez, I., Biga, P., Gabillard, J.P. 2017. miR-210 expression is associated with methionine-induced differentiation of trout satellite cells. Journal of Experimental Biology, 220 : 2932-2938
  11. Li, T., Long, M., Li, H., Gatesoupe, F. J., Zhang, X., Zhang, Q., Feng, D., Li, A. 2017. Multi-omics analysis reveals a correlation between the host phylogeny, gut microbiota and metabolite profiles in cyprinid fishes. Frontiers in Microbiology, 8 : 454
  12. Li, T.T.; Li, H.; Gatesoupe, F.J.; She, R.; Lin, Q.; Yan, X.F.; Li, J.B.; Li, X.Z. 2017. Bacterial signatures of "Red-Operculum" disease in the gut of crucian carp (Carassius auratus). Microbial Ecology, 74 (3) : 510-521
  13. Liu, J.; Dias, K.; Plagnes-juan, E.; Veron, V.; Panserat, P.; Marandel, L. 2017. Long-term programming effect of embryonic hypoxia exposure and high-carbohydrate diet at first feeding on glucose metabolism in juvenile rainbow trout. Journal of Experimental Biology, 220 (20) : 3686-3694
  14. Liu, J., Plagnes- Juan, E., Geurden, I., Panserat, S., Marandel, L. 2017. Exposure to an acute hypoxic stimulus during early life affects the expression of glucose metabolism-related genes at first-feeding in trout. Scientific Reports, 7 : 363
  15. Marandel, L.; Panserat, S.; Plagnes-Juan, E.; Arbenoits, E.; Soengas, J.L.; Bobe, J. 2017. Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages : towards a better understanding of the functions of multiple duplicates. BMC Genomics, 18 : 342
  16. Nahon, S.; Seite, S.; Kolasinski, J.; Aguirre, P.; Geurden, I. 2017. Effects of euthanasia methods on stable carbon (δ13 C value) and nitrogen (δ15 N value) isotopic compositions of fry and juvenile rainbow trout Oncorhynchus mykiss. Rapid Communications in Mass Spectrometry, 31 : 1742-1748
  17. Panserat, S.; Marandel, L.; Geurden, I.; Véron, V.; Dias, K.; Plagnes-Juan, E.; Pégourié, G.; Arbenoits, E.; Santigosa, E.; Weber, G.; Verlhac Trichet, V. 2017. Muscle catabolic capacities and global hepatic epigenome are modified in juvenile rainbow trout fed different vitamin levels at first feeding. Aquaculture, 468 : 515-523
  18. Seiliez, I., Vélez, E. J., Lutfi, E., Dias, K., Plagnes- Juan, E., Marandel, L., Panserat, S., Geurden, I., Skiba-Cassy, S. 2017. Eating for two: Consequences of parental methionine nutrition on offspring metabolism in rainbow trout (Oncorhynchus mykiss). Aquaculture, 471 : 80-91
  19. Tavernier, A.; Davail, S.; Ricaud, K.; Bernadet, M.D.; Gontier, K. 2017. Genes involved in the establishment of hepatic steatosis in Muscovy, Pekin and mule ducks. Molecular and Cellular Biochemistry, 424 (1) : 147-161
  20. Tavernier, A.; Ricaud, K.; Bernadet, M.D.; Davail, S.; Gontier, K. 2017. Kinetics of expression of genes involved in glucose metabolism after the last meal in overfed mule ducks. Molecular and Cellular Biochemistry, 430 (1-2) : 127-137

2016

  1. Antony Jesu Prabhu, P.; Geurden, I.; Fontagné-Dicharry, S.; Véron, V.; Larroquet, L.; Mariojouls, C.; Schrama, J.W.; Kaushik, S.J. 2016. Responses in micro-mineral metabolism in rainbow trout to change in dietary ingredient composition and inclusion of a micro-mineral premix. PLOS One, 11 (2) : e0149378
  2. Antony Jesu Prabhu, P.; Schrama, J.W.; Kaushik, S.J. 2016. Mineral requirements of fish : a systematic review. Reviews in Aquaculture, 8 (2) : 172-219
  3. Balasubramanian, M.N.; Panserat, S.; Dupont-Nivet, M.; Quillet, E.; Montfort, J.; Le Cam, A.; Médale, F.; Kaushik, S.J.; Geurden, I. 2016. Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure. BMC Genomics, 17 : 449
  4. Bobe, J.; Marandel, L.; Panserat, S.; Boudinot, P.; Berthelot, C.; Quillet, E.; Volff, J.N.; Genet, C.; Jaillon, O.; Crollius, H.R.; Guiguen, Y. 2016. The rainbow trout genome, an important landmark for aquaculture and genome evolution. in : Genomics in aquaculture. MacKenzie, S., Jentoft, S. (EDS). Elsevier Academic Press. Chapter 2, 21-43
  5. Borey, M.; Panserat, S.; Surget, A.; Cluzeaud, M.; Plagnes-Juan, E.; Herman, A.; Lazzarotto, V.; Corraze, G.; Médale, F.; Lauga, B.; Burel, C. 2016. Postprandial kinetics of gene expression of proteins involved in the digestive process in rainbow trout (O. mykiss) and impact of diet composition. Fish Physiology and Biochemistry, 42 (4) : 1187-1202
  6. Castro, C.; Corraze, G.; Basto, A.; Larroquet, L.; Panserat, S.; Oliva-Teles, A. 2016. Dietary lipid and carbohydrate interactions : implications on lipid and glucose absorption, transport in gilthead sea bream (Sparus aurata) juveniles. Lipids, 51 (6) : 743-755
  7. Castro, C.; Corraze, G.; Firmino-Diogenes, A.; Larroquet, L.; Panserat, S.; Oliva-Teles, A. 2016. Regulation of glucose and lipid metabolism by dietary carbohydrate levels and lipid sources in gilthead sea bream juveniles. British Journal of Nutrition, 116 (1) : 19-34
  8. Castro, C.; Couto, A.;Pérez-Jiménez, A.; Serra, C.R.; Diaz-Rosales, P.; Fernandes, R.; Corraze, G.; Panserat, S.; Oliva-Teles, A. 2016. Effects of fish oil replacement by vegetable oil blend on digestive enzymes and tissue histomorphology of European sea bass (Dicentrarchus labrax) juveniles. Fish Physiology and Biochemistry, 42 (1) : 203-217
  9. Castro, C.; Diogenes, A.F.; Coutinho, F.; Panserat, S.; Corraze, G.; Perez-Jimenez, A.; Peres, H.; Oliva-Teles, A. 2016. Liver and intestine oxidative status of gilthead sea bream fed vegetable oil and carbohydrate rich diets. Aquaculture, 464 : 665-672
  10. Coutinho, F.; Castro, C.; Rufino-Palomares, E.; Ordonez-Grande, B.; Gallardo, M.A.; Kaushik, S.; Oliva-Teles, A.; Peres, H. 2016. Dietary arginine surplus does not improve intestinal nutrient absorption capacity, amino acid metabolism and oxidative status of gilthead sea bream (Sparus aurata) juveniles. Aquaculture, 464 : 480-488
  11. Dai, W. W., Panserat, S., Kaushik, S., Terrier, F., Plagnes- Juan, E., Seiliez, I., Skiba-Cassy, S. 2016. Hepatic fatty acid biosynthesis is more responsive to protein than carbohydrate in rainbow trout during acute stimulations. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology, 310 (1), R74-R86
  12. Gatesoupe, F-J.; Huelvan, C.; Le Bayon, N.; Le Delliou, H.; Madec, L.; Mouchel, O.; Quazuguel, P.; Mazurais, D.; Zambonino-Infante, J-L. 2016. The highly variable microbiota associated to intestinal mucosa correlates with growth and hypoxia resistance of sea bass, Dicentrarchus labrax, submitted to different nutritional histories. BMC Microbiology, 16 : 266
  13. Gauthey, Z.; Panserat, S.; Elosegi, A.;Herman, A.; Tentelier, C.; Labonne, J. 2016. Experimental evidence of population differences in reproductive investment conditional on environmental stochasticity. Science of the Total Environment, 541 : 143-148
  14. Georgiou, S.; Alami-Durante, H.; Power, D.M.; Sarropoulou, E.; Mamuris, Z.; Moutou, K.A. 2016. Transient up- and down-regulation of expression of myosin light chain 2 and myostatin mRNA mark the changes from stratified hyperplasia to muscle fiber hypertrophy in larvae of gilthead sea bream (Sparus aurata L.). Cell and Tissue Research, 363 : 541-554
  15. Klionsky, D. J., et al. 2016. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 12(1): 1-222
  16. Kolasinski, J.; Nahon, S.; Rogers, K.; Chauvin, A.; Bigot, L.; Frouin, P. 2016. Stable isotopes reveal spatial variability in the trophic structure of a macro-benthic invertebrate community in a tropical coral reef. Rapid Communications in Mass Spectrometry, 30 (3) : 433-446
  17. Lamari, F.; Mahdhi, A.; Chakroun, I.; Esteban, M.A.; Mazurais, D.; Amina, B.; Gatesoupe, F.J. 2016. Interactions between candidate probiotics and the immune and antioxidative responses of European sea bass (Dicentrarchus labrax) larvae. Journal of Fish Diseases, 39 (12) : 1421-1432
  18. Lazzarotto, V.; Corraze, G.; Larroquet, L.; Mazurais, D.; Médale, F. 2016. Does broodstock nutritional history affect the response of progeny to different first-feeding diets ? A whole-body transcriptomic study of rainbow trout alevins. British Journal of Nutrition, 115 (12) : 2079-2092
  19. Li, T.; Long, M.; Ji, C.; Shen, Z.; Gatesoupe, F.J.; Zhang, X; Zhang, Q.; Zhang, L.; Zhao, Y.; Liu, X.; Li, A. 2016. Alterations of the gut microbiome of largemouth bronze gudgeon (Coreis guichenoti) suffering from furunculosis. Scientific Reports, 6 : 30606
  20. Marandel, L.; Dai, W. W.; Panserat, S.; Skiba-Cassy, S. 2016. The five glucose-6-phosphatase paralogous genes are differentially regulated by insulin alone or combined with high level of amino acids and/or glucose in trout hepatocytes. Molecular Biology Reports, 43 (4) :  207-211
  21. Marandel, L.; Lepais, O.; Arbenoits, E.; Véron, V.; Dias, K.; Zion, M.; Panserat, S. 2016. Remodelling of the hepatic epigenetic landscape of glucose-intolerant rainbow trout (Oncorhynchus mykiss) by nutritional status and dietary carbohydrates. Scientific Reports, 6 : 32187
  22. Marandel, L.; Véron, V.; Surget, A.; Plagnes- Juan, E.; Panserat, S. 2016. Glucose metabolism ontogenesis in rainbow trout (Oncorhynchus mykiss) in the light of the recently sequenced genome: new tools for intermediary metabolism programming. Journal of Experimental Biology, 219 (5) : 734-743
  23. Polakof, S., Panserat, S. 2016. How Tom Moon's research highlighted the question of glucose tolerance in carnivorous fish. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 199, 43-49
  24. Rocha, F.; Dias, J.; Geurden, I.; Dinis, M.T.; Panserat, S.; Engrola, S. 2016. Dietary glucose stimulus at larval stage modifies the carbohydrate metabolic pathway in gilthead seabream (Sparus aurata) juveniles: an in vivo approach using 14C-starch. Comparative Biochemistry and Physiology, Part A, 201 : 189-199
  25. Rocha, F.; Dias, J.; Geurden, I.; Dinis, M.T.; Panserat, S.; Engrola, S. 2016. High-glucose feeding of gilthead seabream (Sparus aurata) larvae : effects on molecular and metabolic pathways. Aquaculture, 451 : 241-253
  26. Sadoul, B.; Foucard, A.; Valotaire, C.; Labbé, L.; Goardon, L.; LeCalvez, J.M.; Médale, F.; Quillet, E.; Dupont-Nivet, M.; Geurden, I.; Prunet, P.; Colson, V. 2016. Adaptive capacities from survival to stress responses of two isogenic lines of rainbow trout fed a plant-based diet. Scientific Reports, 6 : 35957
  27. Seiliez, I.; Belghit, I.; Gao, Y.; Skiba-Cassy, S.; Dias, K.; Cluzeaud, M.; Rémond, D.; Hafnaoui, N.; Salin, B.; Camougrand, N.; Panserat, S. 2016. Looking at the metabolic consequencesof the colchicine-based in vivo autophagic flux assay. Autophagy, 12 (2) : 343-356
  28. Skiba-Cassy, S.; Geurden, I.; Panserat, S.; Seiliez, I. 2016. Dietary methionine imbalance alters the transcriptional regulation of genes involved in glucose, lipid and amino acid metabolism in the liver of rainbow trout (Oncorhynchus mykiss). Aquaculture, 454 : 56-65
  29. Stottrup, J.G.; Tomkiewicz, J.;Jacobsen, C.;Butts, I.A.E.;Holst, L.K.; Krüger-Johnsen, M.; Graver, C.; Lauesen, P.; Fontagné-Dicharry, S.; Heinsbroek, L.T.N.; Corraze, G.; Kaushik, S. 2016. Development of a broodstock diet to improve developmental competence of embryos in European eel, Anguilla anguilla. Aquaculture Nutrition, 42 (4) : 725-737
  30. Véron, V.; Panserat, S.; Le Boucher, R.; Labbé, L.; Quillet, E.; Dupont-Nivet, M.; Médale, F. 2016. Long-term feeding a plant-based diet devoid of marine ingredients strongly affects certain key metabolic enzymes in the rainbow trout liver. Fish Physiology and Biochemistry, 42 (2) : 771-785
  31. Yilmaz, H.A.; Corraze, G.; Panserat, S.; Eroldogan, O.T. 2016. Effects of alternate feeding with different lipid sources on fatty acid composition and bioconversion in European sea bass (Dicentrarchus labrax). Aquaculture, 464 : 28-36

2015

  1. Abernathy, J.; Panserat, S.; Welker, T.; Plagnes-Juan, E.; Sakhrani, D.; Higgs, D.A.; Audouin, F.; Devlin, R.H.; Overturf, K. 2015. Food shortage causes differential effects on body composition and tissue-specific gene expression in salmon modified for increased growth hormone production. Marine Biotechnology, 17 (6) : 753-767
  2. Antony Jesu Prabhu, P.; Kaushik, S.J.; Mariojouls, C.; Surget, A.; Fontagné-Dicharry, S.; Schrama, J.W.; Geurden, I. 2015. Comparison of endogenous loss and maintenance need for minerals in rainbow trout (Oncorhynchus mykiss) fed fishmeal or plant ingredient-based diets. Fish Physiology and Biochemistry, 41 (1) :  243-253
  3. Ballester-Lozano, G.F.; Benedito-palos, L.; Estensoro, I.; Sitjà-Bobadilla, A.; Kaushik, S.; Pérez-Sanchez, J. 2015. Comprehensive biometric, biochemical and histopathological assessment of nutrient deficiencies in gilthead sea bream fed semi-purified diets. British Journal of Nutrition, 114 (5) : 713-726
  4. Castro, C.; Corraze, G.; Panserat, S.; Oliva-teles, A. 2015. Effects of fish oil replacement by a vegetable oil blend on digestibility, postprandial serum metabolite profile, lipid and glucose metabolism of European sea bass (Dicentrarchus labrax) juveniles. Aquaculture Nutrition, 21 (5) : 592-603
  5. Castro, C.; Corraze, G.; Pérez-Jiménez, A.; Larroquet, L.; Cluzeaud, M.; Panserat, S.; Oliva-Teles, A. 2015. Dietary carbohydrate and lipid source affect cholesterol metabolism of European sea bass (Dicentrarchus labrax) juveniles. British Journal of Nutrition, 114 (8) : 1143-1156
  6. Castro, C.; Perez-Jimenez, A.; Coutinho, F.; Diaz-Rosales, P.; Serra, C. A. d. R.; Panserat, S.; Corraze, G.; Peres, H.; Oliva-Teles, A. (2015). Dietary carbohydrate and lipid sources affect differently the oxidative status of European sea bass (Dicentrarchus labrax) juveniles. British Journal of Nutrition, 114 (10), 1584-1593
  7. Dai, W.; Panserat, S.; Plagnes-Juan, E.; Seiliez, I.; Skiba-Cassy, S. 2015. Amino acids attenuate insulin action on gluconeogenesis and promote fatty acid biosynthesis via mTORC1 signaling pathway in trout hepatocytes. Cellular Physiology and Biochemistry, 36 ( ) : 1084-1100
  8. Delcroix, J.; Gatesoupe, F.J.; Desbruyères, E.; Huelvan, C.; Le Delliou, H.; Le Gall, M.M.; Quazuguel, P.; Mazurais, D.; Zambonino-Infante, J.L. 2015. The effects of dietary marine protein hydrolysates on the development of sea bass larvae, Dicentrarchus labrax, and associated microbiota. Aquaculture Nutrition, 21 (1) : 98-104
  9. Fontagné-Dicharry, S.; Godin, S.; Liu, H.; Antony Jesu Prabhu, P.; Bouyssière, B.;Bueno, M.; Tacon, P.; Médale, F.; Kaushik, S.J. 2015. Influence of the forms and levels of dietary selenium on antioxydant status and oxidative stress-related parameters in rainbow trout (Oncorhynchus mykiss) fry. British Journal of Nutrition, 113 (12) :1876-1887
  10. Gauthey, Z.; Freychet, M.; Manicki, A.; Herman, A.; Lepais, O.; Panserat, S.; Elosegi, A.; Tentelier, C.; Labonne, J. 2015. The concentration of plasma metabolites varies throughout reproduction and affects offspring number in wild brown trout (Salmo trutta). Comparative Biochemistry and Physiology Part A, 184 : 90-96
  11. Godin, S.; Fontagné-Dicharry, S.; Bueno, M.; Tacon, P.; Antony Jesu Prabhu, P.; Kaushik, S.; Médale, F.; Bouyssière, B. 2015.Influence of dietary selenium species on selenoamino acid levels in rainbow
    2015. Three-year breeding cycle of rainbow trout (Oncorhynchus mykiss) fed a plant-based diet, totally free of marine resources : consequences for reproduction, fatty acid composition and progeny survival. Plos One, 10 (2) : e0117609
  12. Lebret, B.; Prache, S.; Berri, C.; Lefèvre, F.; Bauchart, D.; Picard, B.; Corraze, G.; Médale, F.; Faure, J.; Alami-Durante, H.2015. Qualité des viandes : influences des caractéristiques des animaux et de leurs conditions d'élevage. INRA Productions Animales, 28 (2) : 151-168
  13. Lefevre, F.; Cardinal, M.; Bugeon, J.; Labbé, L.; Médale, F.; Quillet, E. 2015. Selection for muscle fat content and triploidy affect flesh quality in pan-size rainbow trout, Oncorhynchus mykiss. Aquaculture, 448 : 569-577
  14. Li, T.; Long, M.; Gatesoupe, F.J.; Zhang, Q.; Li, A.; Gong, X. 2015. Comparative analysis of the intestinal bacterial communities in different species of carp by pyrosequencing. Microbial Ecology, 69 (1) : 25-36
  15. Libran-Perez, M.; Geurden, I.; Dias, K.; Corraze, G.; Panserat, S.; Soengas, J.L. 2015. Feeding rainbow trout with a lipid-enriched diet : effects on fatty acid sensing, regulation of food intake and cellular signaling pathways. Journal of Experimental Biology, 218 (16) : 2610-2619
  16. Marandel, L.; Seiliez, I.; Veron, V.; Skiba-Cassy, S.; Panserat, S. 2015. New insights into the nutritional regulation of gluconeogenesis in carnivorous rainbow trout (Oncorhynchus mykiss) : a gene duplication trail. Physiological Genomics, 47 (7) :  253-263
  17. Omnes, M.H.; Silva, F.C.P.; Moriceau, J.; Aguirre, P.; Kaushik, S.; Gatesoupe, F.J. 2015. Influence of lupin and rapeseed meals on the integrity of digestive tract and organs in gilthead seabream (Sparus aurata L.) and goldfish (Carassius auratus L.) juveniles. Aquaculture Nutrition, 21 (2) : 223-233
  18. Rocha, F.; Dias, J.; Engrola, S.; Gavaia, P.; Geurden, I.; Dinis, M.T.; Panserat, S. 2015. Glucose metabolism and gene expression in juvenile zebrafish (Danio rerio) challenged with a high carbohydrate diet : effects of an acute glucose  stimulus during late embryonic life. British Journal of Nutrition, 113 (3) : 403-413
  19. Seiliez, I.; Froehlich, J.M.;Marandel, L.; Gabillard, J.C.; Biga, P.R. 2015. Evolutionary history and epigenetic regulation of the three paralogous pax7 genes in rainbow trout. Cell and Tissue Research, 359 (3) : 715-727

2014

  1. Alami-Durante, H.; Cluzeaud, M.; Duval, C.; Maunas, P.; Girod-David, V.; Médale, F. 2014. Early decrease in dietary protein : energy ration by fat addition and ontogenetic changes in muscle growth mechanisms of rainbow trout : short- and long-term effects. British Journal of Nutrition, 112 (5) : 674-687
  2. Antony Jesu Prabhu, P.; Schrama, J.W.; Mariojouls, C.; Godin, S.; Fontagné-Dicharry, S.; Geurden, I.; Surget, A.; Bouyssière, B.; Kaushik, S.J. 2014. Post-prandial changes in plasma mineral levels in rainbow trout fed a complete plant ingredient based diet and the effect of supplemental di-calcium phosphate. Aquaculture, 430 : 34-43
  3. Belghit, I.; Skiba-Cassy, S.; Geurden, I.; Dias, K.; Surget, A.; Kaushik, S.; Panserat, S.; Seiliez, I. 2014. Dietary methionine availability affects the main factors involved in muscle protein turnover in rainbow trout (Oncorhynchus mykiss). British Journal of Nutrition, 112 (4) :  493-503
  4. Borges, P. ; Reis, B.; Fernandes, T.J.R.; Palmas, A.; Castro-Cunha, M. ; Médale, F.; Oliveira, M.B.P.P. ; Valente, L.M.P. 2014. Senegale sole juveniles can cope with diets devoid of supplemental fish oil while preserving flesh nutritional value. Aquaculture, 418-419 : 116-125
  5. Borges, P.; Valente, L.M.P.; Veron, V.; Dias, K.; Panserat, S.; Médale, F. 2014. High dietary lipid level is associated with persistent hyperglycaemia and downregulation of muscle Akt-mTOR pathway in Senegalese sole (Solea senegalensis). PLOS One, 9 (7) : e102196
  6. Burel, C.; Médale, F. 2014. Quid de l'utilisation des protéines d'origine végétale en aquaculture ? OCL, 21 (4) : D 406
  7. Dai, W.; Panserat, S.; Terrier, F.; Seiliez, I.; Skiba-Cassy, S. 2014. Acute rapamycin treatment improved glucose tolerance through inhibition of hepatic gluconeogenesis in rainbow trout (Oncorhynchus mykiss). American Journal of Physiology Regulatory Integrative Comparative Physiology, 307 (10) : R1230-R1238
  8. Fontagné-Dicharry, S.; Lataillade, E.; Surget, A.; Larroquet, L.; Cluzeaud, M.; Kaushik, S. 2014. Antioxidant defense system is altered by dietary oxidized lipid in first-feeding rainbow trout (Oncorhynchus mykiss). Aquaculture, 424-425 : 220-227
  9. Froehlich, J.M.. Seiliez, I.; Gabillard, J.C.; Biga, P.R. 2014. Preparation of primary myogenic precursor cell/myoblast cultures from basal vertebrate lineages. Journal of Visualized Experiments (86) : e51354
  10. Gatesoupe, F.J.; Huelvan, C.; Le Bayon, N.; Sévère, A.; Aasen, I.M.; Degnes, K.F.; Mazurais, D.; Panserat, S.; Zambonino-Infante, J.L.; Kaushik, S.J. 2014. The effects of dietary carbohydrate sources and forms on metabolic response and intestinal microbiota in sea bass juveniles, Dicentrarchus labrax. Aquaculture, 422-423 : 47-53
  11. Geurden, I.; Mennigen, J.; Plagnes-Juan, E.; Veron, V.; Cerezo, T.; Mazurais, D.; Zambonino-Infante, J.; Gatesoupe, J.; Skiba-Cassy, S.; Panserat, S. 2014. High or low dietary carbohydrate: protein ratios during first-feeding affect glucose metabolism and intestinal microbiota in juvenile rainbow trout. Journal of Experimental Biology, 217 (19) : 3396-3406
  12. Jin, J.; Médale, F.; Kamalam, B.S.; Aguirre, P.; Véron, V.; Panserat, S. 2014. Comparison of glucose and lipid metabolic gene expressions between fat and lean lines of rainbow trout after a glucose load. PLOS One, 9 (8) : e105548
  13. Jin, J.; Panserat, S.; Kamalam, B.S.; Aguirre, P.; Véron, V.; Médale, F. 2014. Insulin regulates lipid and glucose metabolism similarly in two lines of rainbow trout divergently selected for muscle fat content. General and Comparative Endocrinology, 204 : 49-59
  14. Kaushik, S. 2014. L'apport de la pisciculture à l'alimentation de l'homme. Cahiers Agriculture, 23 (1) : 18-23
  15. Lamari, F.; Sadok, K.; Bakhrouf, A.; Gatesoupe, F.J. 2014. Selection of lactic acid bacteria as candidate probiotics and in vivo test on Artemia nauplii. Aquaculture International, 22 (2): 699-709
  16. Luo, L.; Xue, L.; Vachot, C.; Geurden, I.; Kaushik, S. 2014. Dietary medium chain fatty acids from coconut oil have little effects on postprandial plasma metabolite profiles in rainbow trout (Oncorhynchus mykiss). Aquaculture, 420-421 : 24-31
  17. Mennigen, J.A.; Martyniuk, C.J.; Seiliez, I.; Panserat, S.; Skiba-Cassy, S. 2014. Metabolic consequences of microRNA-122 inhibition in rainbow trout, Oncorhynchus mykiss. BMC Genomics, 15 : 70
  18. Mennigen, J.A.; Plagnes-Juan, E.; Figueredo-Silva, C.A.; Seiliez, I.; Panserat, S.; Skiba-Cassy, S. 2014.  Acute endocrine and nutritional co-regulation of the hepatic omy-miRNA-122b and the lipogenic gene fas in rainbow trout, Oncorhynchus mykiss. Comparative Biochemistry and Physiology Part B, 169 : 16-24
  19. Otchoumou, A.K.; Blé, C.M.; Alla, Y.L.; Corraze, G.; Niamke, S.L.; Diopoh, J.K. 2014. Effect of crude palm oil incorporation on growth, survival, feed efficiency, and body composition of Heterobranchus longifilis fingerlings. Journal of Applied Aquaculture, 26 (2) : 169-178
  20. Panserat, S.; Kamalam, B.S.; Fournier, J.; Plagnes-Juan, E.; Woodward, K.; Devlin, R.H. 2014. Glucose metabolic gene expression in growth hormone transgenic coho salmon. Comparative Biochemistry and Physiology, Part A, 170 : 38-45
  21. Panserat, S.; Rideau, N.; Polakof, S. 2014. Nutritional regulation of glucokinase : a cross-species story. Nutrition Research Reviews, 27 (1) : 21-47
  22. Phocas, F.; Agabriel, J.; Dupont-Nivet, M.; Geurden, I.; Médale, F.; Mignon-Grasteau, S.; Gilbert, H.; Dourmad, J.Y. 2014. Le phénotypage de l'efficacité alimentaire et de ses composantes, une nécessité pour accroître l'efficience des productions animales. INRA Productions Animales, 27 (3) : 235-248
  23. Rocha, F.; Dias, J.; Engrola, S.; Gavaia, P.; Geurden, I.; Dinis, M.T.; Panserat, S. 2014. Glucose overload in yolk has little effect on the long-term modulation of carbohydrate metabolic genes in zebrafish (Danio rerio).Journal of Experimental Biology, 217 (7) : 1139-1149
  24. Rodriguez, J., Vernus, B., Chelh, I., Cassar-Malek, I., Gabillard, J.-C., Hadj Sassi, A., Seiliez, I., Picard, B., Bonnieu, A. 2014. Myostatin and the skeletal muscle atrophy and hypertrophy signaling pathways. Cellular and Molecular Life Sciences : CMLS, 71 (22), 4361-4371
  25. Salze, G.; Alami-Durante, H.; Barbut, S.; Marcone, M.; Bureau, D.P. 2014. Nutrient deposition partitioning and priorities between body compartments in two size classes of rainbow trout in response to feed restriction. British Journal of Nutrition, 111 (8), 1361-1372
  26. Seiliez, I.; Dias, K.; Cleveland, B. 2014. Contribution of the autophagy-lysosomal and ubiquitin-proteasomal proteolytic systems to total proteolysis in rainbow trout (Oncorhynchus mykiss) myotubes. American Journal of Physiology Regulatory Integrative Comparative Physiology, 307 (11) : R1330-R1337
  27. Wade, N.M. ; Skiba-Cassy, S. ; Dias, K. ; Glencross, B.D. 2013. Postprandial molecular responses in the liver of the barramundi, Lates calcarifer. Fish Physiology and Biochemistry, 40 (2) : 427-433