2021

• Jacques Labonne, Aurélie Manicki, Louise Chevalier, Marin Tétillon, François Guéraud, et al.. Using Reciprocal Transplants to Assess Local Adaptation, Genetic Rescue, and Sexual Selection in Newly Established Populations. Genes, MDPI, 2021, 12 (1), 20 p. ⟨10.3390/genes12010005⟩. ⟨hal-03102333⟩

2020

• Dhamelincourt, M. et al. Individual and group characteristics affecting nest building in sea lamprey ( Petromyzon marinus L. 1758 ). Journal of Fish Biology, pages 1–9, 2020. doi: 10.1111/jfb.14601. URL https://hal.inrae.fr/ hal-03036001.
• Bouchard, C. et al. Sexual maturity increases mobility and heterogeneity in individual space use in Atlantic salmon ( Salmo salar ) parr. Journal of Fish Biology, 96(4):925–938, April 2020. doi: 10.1111/jfb.14282. URL https://hal.inrae.fr/hal-02872236.
• Chat J, Aymes J, Lange F, Carlut E, Barracou D (2020). "Sea trout entering the rivers Adour and Nivelle in south-west France at the start of the 21st century". Version 1.10. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE).
• Eldøy, S. et al. The biology and feeding ecol- ogy of Arctic charr in the Kerguelen Islands. Journal of Fish Biology, page 12 p., 2020. doi: 10.1111/jfb.14596. URL https://hal.inrae.fr/hal-03102144.
• Elorri Arevalo,E. et al. Comparison of food availability and perfor- mances of first-feeding alevins through spring with the occurrence of a flood. Ecology of Freshwater Fish, 2020. doi: 10.1111/eff.12546. URLhttps://hal.inrae.fr/hal-02872304.
• Liu,H. et al. New insights into methylmercury in- duced behavioral and energy-related gene transcriptional responses in European glass eel (Anguilla anguilla). Chemosphere, 255, 2020. doi: 10.1016/j.chemosphere.2020.127020. URL https: //hal.inrae.fr/hal-02868468.
• Monperrus M. et al. Imaging Differential Mercury Species Bioaccumulation in Glass Eels Using Isotopic Tracers and Laser Ablation Inductively Coupled Plasma Mass Spectrometry. Applied Sciences, 10(7):2463, April 2020. doi: 10.3390/app10072463. URL https://hal-univ-pau.archives-ouvertes.fr/hal-02555308.
• Pottier, G. et al. Electrofishing in streams of low water conductivity but high biodiversity value: Challenges, limits and perspectives. Fisheries Management and Ecology, 27(1):52–63, February 2020. doi: 10.1111/fme.12384. URL https://hal.archives-ouvertes.fr/ hal-02299640.
• Tentelier C, Bouchard C, Bernardin A, Tauzin A, Aymes J-C, Lange F, Récapet C, Rives J (2020) The dynamics of spawning acts by a semelparous fish and its associated energetic expenses. bioRxiv, 436295.doi: 10.1101/436295 ver. 7 peer-reviewed and recommended by PCI Ecology. https://doi.org/10.1101/436295
• Vignon, M. Aymes, J-C. Functional effect of vaterite – the presence of an alternative crystalline structure in otoliths alters escape kinematics of the brown trout. Journal of Experimental Biology, 223(12), 2020. doi: 10.1242/jeb.222034. URL https://hal.inrae.fr/ hal-02912282.
• Vignon, M. When the presence of a vateritic otolith has morphological effect on its aragonitic partner: trans-lateral compensation induces bias in microecological patterns in one-side-only vateritic otolith. Canadian Journal of Fisheries and Aquatic Sciences, 77(2):285–294, 2020. doi: 10.1139/cjfas- 2019-0066. URL https://hal.archives-ouvertes.fr/hal-02415001.

2019

• Arevalo E., Larranaga A., Lang M., Prevost E., Bardonnet A. (2019). Comparison of the propensity to drift for three invertebrate taxa: a laboratory study. Hydrobiologia, DOI 10.1007/s10750-018-3870-y
• Arevalo, E. et al. Comparison of the propensity to drift for three invertebrate taxa: a laboratory study. Hydrobiologia, 830 (1):243–254, 2019. doi: 10.1007/s10750-018-3870-y.
• Giacosa, L. A, Aymes, J-C. Gaudin, P. Vignon, M. Hierarchical variance decomposition of fish scale growth and age to investigate the relative contributions of readers and scales. Marine and Freshwater Research, CSIRO Publishing, 2019, 70 (12), pp.1828-1837. ⟨10.1071/MF19059⟩. ⟨hal-02414999⟩
• Liu, H. et al. Looking at the complex relationships between migration behavior and conditional strategy based on energy metabolism in the European glass eel (Anguilla anguilla). Science of The Total Environment, 696:np, 2019. doi: 10.1016/j.scitotenv.2019.134039. URL https://hal.archives-ouvertes.fr/hal-02299643.
• Pottier, G. et al. Electrofishing in streams of low water conductivity but high biodiversity value: Challenges, limits and perspectives. Fish Manag Ecol fme.12384 (2019) doi:10.1111/fme.12384.
• Vignon, M. (2019) When the presence of a vateritic otolith has morphological effect on its aragonitic partner: translateral compensation induces bias in microecological patterns in one-side-only vateritic otolith. Can. J. Fish. Aquat. Sci., 2019 00: 1–10 (0000) dx.doi.org/10.1139/cjfas-2019-0066

2018

• Arevalo E., Panserat S., Seiliez I., Larrañaga A., Bardonnet A. (2018). Effect of food shortage and temperature on age 0+ salmonids: A contribution to predict the effects of climate change. Journal of Fish Biology DOI:10.1111/jfb.13533
• Bacles C.F.E., Bouchard C., Lange F., Manicki A., Tentelier C., Lepais O. (2018). Estimating the effective number of breeders from single parr samples for conservation monitoring of wild populations of Atlantic salmon Salmo salar. Journal of Fish Biology, 92 (3): 699-726
• Bouchard C., Bardonnet A., Buoro M., Tentelier C. (2018). Effects of spatial aggregation of nests on population recruitment: the case of a small population of Atlantic salmon. Ecosphere, 9(4): e02178. 10.1002/ecs2.2178
• Eldrogi N., Luthon F., Larroque B., Alqaddafi S., Bolliet V. (2018). Motion estimation of glass eels by differential methods. International Science and Technology Journal, 299-315.
• Jarry M., Beall E., Davaine P., Guéraud F., Gaudin P., Aymes J.C., Labonne J., Vignon M. (2018). Sea trout (Salmo trutta) growth patterns during early steps of invasion in the Kerguelen islands. Polar Biology, 41 (5): 925-934.
• Maite Arroita, Lorea flores, Aitor Larrañaga, Eric Chauvet, and Arturo Elosegi. Hydrological contingency: drying history affects aquatic microbial decomposition. Aquatic Sciences – Re- search Across Boundaries, 80(3):np, 2018. doi: 10.1007/s00027-018-0582-3.
• Marandel L., Gaudin P., Guéraud F., Glise S., Herman A., Plagnes-Juan E., Véron V., Panserat S., Labonn, J. (2018). A reassessment of the carnivorous status of salmonids : hepatic glucokinase is expressed in wild fish in Kerguelen islands. Science of the Total Environment, 61 : 276-285.
• Masson, S., Lepais, O., Manicki, A., Prévost, E., Chat, J. (2018). Disentangling individual movement between populations from effective dispersal in the facultative anadromous Salmo trutta L. Ecology of Freshwater Fish, 27 (1), 323-338. DOI : 10.1111/eff.12349
• Mougin C., Artige E., Marchand F., Mond, S., Ratié C., Sellier N., Castagnone-Sereno P., Coeur d'Acier A., Esmenjaud D., Faivre-Primot C., Granjon, L., Hamelet V., Lange F., Pagès S., Rimet F., Ris N., Sallé G. (2018). BRC4Env, a network of Biological Resource Centres for research in environmental and agricultural sciences. Environmental Science and Pollution Research, 25(34): 33849-33857.
• Vignon, M. Short-term stress for long-lasting otolith morphology – brief embryological stress disturbance can reorient otolith ontogenetic trajectory. Canadian Journal of Fisheries and Aquatic Sciences, pages 1–10, 2018. doi: 10.1139/cjfas-2017-0110. URL https://hal.archives-ouvertes. fr/hal-01855436.

2017

• Gauthey Z., Lang M., Elosegi A., Tentelier C., Rives J., Labonne J. (2017). Brown trout spawning habitat selection and its effects on egg survival. Ecology of Freshwater Fish, 26 (1), 133-140. DOI : 10.1111/eff.12262
• Bolliet V., Claveau J., Jarry M., Gonzalez P., Baudrimont Monperrus M. (2017). Migratory behavior, metabolism, oxidative stress and mercury concentrations in marine and estuarine European glass eels (Anguilla anguilla). Physiology and Behavior, 169: 33-40. DOI : 10.1016/j.physbeh.2016.11.008
• Gauthey Z., Tentelier C., Lepais, O., Elosegi A., Royer L., Glise S., Labonne J. (2017). With our powers combined: integrating behavioral and genetic data to estimate mating success and sexual selection. Rethinking Ecology, 2, 1-26. DOI : 10.3897/rethinkingecology.2.14956.
• *Jacquin, L., Gauthey, Z., Roussille, V., Le Hénaff, M., Tentelier, C., Labonne, J. (2017). Melanin in a changing world: brown trout coloration reflects alternative reproductive strategies in variable environments. Behavioral Ecology, online first. DOI : 10.1093/beheco/arx102
• *Lepais, O., Manicki, A., Glise, S., Buoro, M., Bardonnet, A. (2017). Genetic architecture of threshold reaction norms for male alternative reproductive tactics in Atlantic salmon (Salmo salar L.). Scientific Reports, 7 (43552). DOI : 10.1038/srep43552
• Masson S., Lepais O., Manicki A., Prévost E., Chat J. (2017). Disentangling individual movement between populations from effective dispersal in the facultative anadromous Salmo trutta L. Ecology of Freshwater Fish, online first, 16 p. DOI : 10.1111/eff.12349
• Tentelier C., Barroso-Gomila O., Lepais O., Manicki A., Romero Garmendia I., Jugo B. (2017). Testing mate choice and over dominance at MH in natural families of Atlantic salmon Salmo salar. Journal of Fish Biology, 90 (4), 1644-1659. DOI : 10.1111/jfb.13260
• Data from: Genetic architecture of threshold reaction norms for male alternative reproductive tactics in Atlantic salmon (Salmo salar L.). Lepais O, Manicki A, Glise S, Buoro M, Bardonnet A. Date Published: March 10, 2017. DOI: https://DOI.org/10.5061/dryad.4h0d0
• *Data from: Melanin in a changing world: brown trout coloration reflects alternative reproductive strategies in variable environments. Jacquin L, Gauthey Z, Roussille V, Le Hénaff M, Tentelier C, Labonne J. Date Published: June 16, 2017. DOI: https://DOI.org/10.5061/dryad.q03c3”
• Vivancos A., Closs G., Tentelier C. (2017). Are 2D space-use analyses adapted to animals living in 3D environments? A case study on a fish shoal. Behavioral Ecology, 28 (2), 485-493. DOI : 10.1093/beheco/arw175
• Marchand, F., Beaulaton, L., Prévost, E., Delanoë, R., Destouches, J. P., Gueraud, F., … & Rives, J. (2017). Abundance indices and biological traits of juvenile salmon (Salmo salar) sampled in three rivers on the Atlantic and Channel coasts (France). Biodiversity data journal, (5).
• Bolliet, V., Labonne J., Olazcuaga, L., Panserat, S., Seiliez, I. (2017). Modeling of autophagy-related gene expression dynamics during long term fasting in European eel (Anguilla anguilla). Scientific Reports 7: 17896. DOI:10.1038/s41598-017-18164-6
• Jatteau, P., Drouineau, Charles, Carry, L., Lange, F., Lambert (2017). Thermal tolerance of allis shad (Alosa alosa) embryos and larvae: Modeling and potential applications. Aquatic Living Resources, 30 (2), 8 p. DOI : 10.1051/alr/2016033
• Gauthey, Z., Tentelier, C., Lepais, O., Elosegi, A., Royer, L., Glise, S., Labonne, J. (2017). With our powers combined: integrating behavioral and genetic data to estimate mating success and sexual selection. Rethinking Ecology, 2, 1-26. DOI : 10.3897/rethinkingecology.2.14956
• Elosegi, A., Díez, J. R., Flores, L., Molinero, J. (2017). Pools, channel form, and sediment storage in wood-restored streams: potential effects on downstream reservoirs. Geomorphology, 279, 165-175. DOI : 10.1016/j.geomorph.2016.01.007

2016

• Aymes J.-C., Vignon M., Beall E., Gueraud F., Gaudin P. (2016). Age validation of the Kerguelen Islands brown trout, Salmo trutta L., and selection of the otolith optimal zone for investigating chronological data series. Fisheries Research, 176: 22-29. DOI : 10.1016/j.fishres.2015.11.025
• Flores, L., Bailey, R. A., Elosegi, A., Larrañaga, Reiss, J. (2016). Habitat Complexity in Aquatic Microcosms Affects Processes Driven by Detritivores. Plos One, 11 (11), e0165065. DOI : 10.1371/journal.pone.0165065
• Gauthey Z., Hendry A. P., Elosegi A., Tentelier C., Labonne J. (2016). The context dependence of assortative mating: a demonstration with conspecific salmonid populations. Journal of Evolutionary Biology, 29 (9): 1827-1835. DOI : 10.1111/jeb.12914
• Gauthey Z., Panserat S., Elosegi A., Herman A., Tentelier C., Labonne J. (2016). Experimental evidence of population differences in reproductive investment conditional on environmental stochasticity. Science of the Total Environment, 541, 143-148. DOI : 10.1016/j.scitotenv.2015.09.69
• Geffroy B., Guilbaud F., Amilhat E., Beaulato, L., Vignon M., Huchet E., Rives J., Bobe J., Fostier A., Guiguen Y., Bardonnet A. (2016). Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context. Scientific Reports, 6: 1-11. DOI : 10.1038/srep34041
• Geffroy, B., Bolliet, V., Bardonnet, A. (2016). Kleptoparasitism and aggressiveness are influenced by standard metabolic rate in eels. Physiology and Behavior, 157, 165-169. DOI : 10.1016/j.physbeh.2016.01.046
• Geffroy, Benjamin, Valérie Bolliet, et Agnès Bardonnet. « Kleptoparasitism and Aggressiveness Are Influenced by Standard Metabolic Rate in Eels ». Physiology & Behavior 157 (avril 2016): 165‑69.
• Gil J., Labonne J., Caudron A. (2016). Evaluation of strategies to conserve and restore intraspecific biodiversity of brown trout: outcomes from genetic monitoring in the French Alps. Reviews in Fish Biology and Fisheries, 26, 1-11.
• Gil, J., Caudron, A., Labonne, J. (2016). Can female preference drive intraspecific diversity dynamics in brown trout (Salmo trutta, L.)?. Ecology of Freshwater Fish, 25 (3), 352-359. DOI : 10.1111/eff.12215
• Labonne J., Kaeuffer R., Gueraud F., Zhou M., Manicki A., Hendry A. P. (2016). From the bare minimum : genetics and selection in populations founded by only a few parents. Evolutionary Ecology Research, 17 (1): 21-34.
• Marandel L., Lepais O., Arbenoits E., Veron V., Dias K., Zion M., Panserat S. (2016). Remodelling of the hepatic epigenetic landscape of glucose-intolerant rainbow trout (Oncorhynchus mykiss) by nutritional status and dietary carbohydrates. Scientific Reports, 6, 12 p. DOI : 10.1038/srep32187
• Tentelier C., Aymes J.-C., Spitz B., Rives J. (2016). Using proximity loggers to describe the sexual network of a freshwater fish. Environmental Biology of Fishes, 99 (8-9): 621-631. DOI : 10.1007/s10641-016-0504-y
• Tentelier C., Larranaga N., Lepais O., Manicki A., Rives J., Lange F. (2016). Space use and its effects on reproductive success of anadromous Atlantic salmon. Canadian Journal of Fisheries and Aquatic Sciences, 73 (10), 1461-1471. DOI : 10.1139/cjfas-2015-0518
• Tentelier C., Lepais O., Larranaga N., Manicki A., Lange F., Rives J. (2016). Sexual selection leads to a tenfold difference in reproductive success of alternative reproductive tactics in male Atlantic salmon. Naturwissenschaften, 103 (5-6), 13 p. DOI : 10.1007/s00114-016-1372-1

2015

• Claveau, J.; Monperrus, M.; Jarry, M.; Baudrimont, M.; Gonzalez, P.; Cavalheiro, J.; Mesmer-Dudons, N.; Bolliet, V. (2015). Methylmercury effects on migratory behaviour in glass eels (Anguilla anguilla) : an experimental study using isotopic tracers. Comparative Biochemistry and Physiology, Part C, 171 : 15-27. DOI
• Claveau, J.; Monperrus, M.; Jarry, M.; Pinaly, H.; Baudrimont, M.; Gonzalez, P.; Amouroux, D.; Bardonnet, A.; Bolliet, V. (2015). Spatial and seasonal variations of methylmercury in European glass eels (Anguilla anguilla) in the Adour estuary (France) and relation to their migratory behaviour. Environmental Science and Pollution Research, 22 (14) : 10721-10732. DOI
• Gauthey, Z.; Freychet, M.; Manicki, A.; Herman, A.; Lepais, O.; Panserat, S.; Elosegi, A.; Tentelier, C.; Labonne, J. (2015). The concentration of plasma metabolites varies throughout reproduction and affects offspring number in wild brown trout (Salmo trutta). Comparative Biochemistry and Physiology Part A, 184 : 90-96. DOI
• Geffroy, B.; Sadoul, B.; Bardonnet, A. (2015). Behavioural syndrome in juvenile eels and its ecological implications. Behaviour, 152 (2) : 147-166. DOI
• Régnier, T., Labonne, J., Chat, J., Yano, A., Guiguen, Y., Bolliet, V. (2015). No early gender effects on energetic status and life history in a salmonid.  Royal Society Open Science, 2 : 150441. DOI