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UMR Biogeco - Biodiversité Gènes et Communautés

De 2003 à 2009

Anthelme F, Michalet R (2009) Grass-to-tree facilitation in an arid grazed environment (Aïr Mountains, Sahara).Basic and Applied Ecology10, 437-446.

Archaux F, Camaret S, Dupouey J-L, Ulrich E, Corcket E, Bourjot L, Brethes A, Chevalier R, Dobremez J-F, Dumas Y, Dume G, Foret M, Forgeard F, Gallet M-L, Picard J-F, Richard F, Savoie J-M, Seytre L, Timbal J, Touffet J (2009) Can we reliably estimate species richness with large plots? an assessment through calibration training.Plant Ecology203, 303-315.

Ascher J, Ceccherini MT, Landi L, Mench M, Pietramellara G, Nannipieri P, Renella G (2009) Composition, biomass and activity of microflora, and leaf yields and foliar elemental concentrations of lettuce, after in situ stabilization of an arsenic-contaminated soil.Applied Soil Ecology41, 351-359.

Bacles CFE, Brooks J, Lee DJ, Schenk PM, Lowe AJ, Kremer A (2009) Reproductive biology of Corymbia citriodora subsp variegata and effective pollination across its native range in Queensland, Australia.Southern Forests71, 125-132.

Barbaro L, van Halder I (2009) Linking bird, carabid beetle and butterfly life-history traits to habitat fragmentation in mosaic landscapes.Ecography 32, 321-333.

Bertheau C, Salle A, Rossi J-P, Bankhead-dronnet S, Pineau X, Roux-Morabito G, Lieutier F (2009) Colonisation of native and exotic conifers by indigenous bark beetles (Coleoptera: Scolytinae) in France.Forest Ecology and Management258, 1619-1628.

Bonhomme L, Monclus R, Vincent D, Carpin S, Momenech AM, Plomion C, Brignolas F, Morabito D (2009) Leaf proteome analysis of eight Populus x euramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins.Proteomics9, 4121-4142.

Bonhomme L, Monclus R, Vincent D, Carpin S, Claverol S, Lomenech AM, Labas V, Plomion C, Brignolas F, Morabito, D (2009) Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants.Phytochemistry70, 988-1002.

Bouffier L, Raffin A, Rozenberg P, Meredieu C, Kremer A (2009) What are the consequences of growth selection on wood density in the French maritime pine breeding programme?Tree Genetics & Genomes5, 11-25.

Bresson CC, Kowalski AS, Kremer A, Delzon S (2009) Evidence of altitudinal increase in photosynthetic capacity: gas exchange measurements at ambient and constant CO2 partial pressures.Annals of Forest Science66.

Brin A, Brustel H, Jactel H (2009) Species variables or environmental variables as indicators of forest biodiversity: a case study using saproxylic beetles in Maritime pine plantations. Annals of Forest Science66, 306.

Brooker RW, Callaway RM, Cavieres L, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Valiente-Banuet A, Whitham TG (2009) Don't diss integration: A comment on Ricklefs' disintegrating communities.American Naturalist174, 919-927.

Burgarella C, Lorenzo Z, Jabbour-Zahab R, Lumaret R, Guichoux E, Petit RJ, Soto A, Gil L (2009) Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex).Heredity102, 442-452.

Cochard H, Hölttä T, Herbette S, Delzon S, Mencuccini M (2009) New insights into the mechanism of water-stress induced cavitation in conifers.Plant Physiology 151, 949-954.

Decaëns T, Jimenez JJ, Rossi J-P (2009) A null-model analysis of the spatio-temporal distribution of earthworm species assemblages in Colombian grasslands.Journal of Tropical Ecology25, 415-427.

Deconchat M, Brockerhoff E, Barbaro L (2009) Effects of surrounding landscape composition on the conservation value of native and exotic habitats for native forest birds.Forest Ecology and Management258(Supplement), S196-S204.

Devaux M, Ghashghaie J, Bert D, Lambrot C, Gessler A, Bathellier C, Ogee J, Loustau D (2009) Carbon stable isotope ratio of phloem sugars in mature pine trees throughout the growing season: comparison of two extraction methods.Rapid Communications in Mass Spectrometry23, 2511-2518.

Di Vecchi-Staraz M, Laucou V, Bruno G, Lacombe T, Gerber S, Bourse T, Boselli M, This P (2009) Low level of pollen-mediated gene flow from cultivated to wild grapevine: Consequences for the evolution of the endangered subspecies Vitis vinifera L. subsp silvestris.Journal of Heredity100, 66-75.

Du F K, Petit RJ, Liu JQ (2009) More introgression with less gene flow: chloroplast vs. mitochondrial DNA in the Picea asperata complex in China, and comparison with other Conifers.Molecular Ecology18, 1396-1407.

Duminil J, Hardy OJ, Petit RJ (2009) Plant traits correlated with generation time directly affect inbreeding depression and mating system and indirectly genetic structure.BMC Evolutionary Biology9, 77.

Dutoit T, Thinon M, Talon B, Buisson E, Alard D (2009) Sampling soil wood charcoals at a high spatial resolution: a new methodology to investigate the origin of grassland plant communities.Journal of Vegetation Science20, 349-358.

Excoffier L, Foll M, Petit RJ (2009) Genetic consequences of range expansions.Annual Review of Ecology, Evolution and Systematics40, 481-501.

Forey E, Lortie CJ, Michalet R (2009) Spatial patterns of association at local and regional scales in coastal sand dune communities.Journal of Vegetation Science20, 916–925.

Foucart C, Jauneau A, Gion J-M, Amelot N, Martinez Y, Panegos P, Grima-Pettenati J, Sivadon P (2009) Overexpression of EgROP1, a Eucalyptus vascular-expressed Rac-like small GTPase, affects secondary xylem formation in Arabidopsis thaliana.New Phytologist183, 1014-1029.

Gérardeaux E, Saur E, Constantin J, Porté A, Jordan-Meille L (2009) Effect of carbon assimilation on dry weight production and partitioning during vegetative growth of K-deficient cotton (Gossypium hirsutum L.) plants.Plant and Soil324, 329–343.

Grattapaglia D, Plomion C, Kirst M, Sederoff RR (2009) Genomics of growth traits in forest trees.Current Opinion in Plant Biology12, 148-156.

Horn A, Stauffer C, Lieutier F, Kerdelhué C (2009) Complex postglacial history of the temperate bark beetle Tomicus piniperda L. (Coleoptera, Scolytinae).Heredity103, 238-247.

Hu FS, Hampe A, Petit RJ (2009) Paleoecology meets genetics: Deciphering past vegetational dynamics.Frontiers in Ecology & Environment7, 371-379.

Jactel H, Nicoll B, Branco M, Gonzalez-Olabarria JR, Grodzki W, Langström B, Moreira F, Netherer S, Orazio C, Piou D, Santos H, Schelhaas MJ, Tojic K, Vodde F (2009) The influences of forst stand management on biotic and abiotic risks of damage.Annals of Forest Science66, 701.

Kerdelhué C, Zane L, Simonato M, Salvato P, Rousselet J, Roques A, Battisti A (2009) Quaternary history and contemporary patterns in a currently expanding species.BMC Evolutionary Biology9, 220.

LeBoldus JM, Blenis PV, Thomas BR, Feau N, Bernier L (2009) Susceptibility of Populus balsamifera to Septoria musiva: A field study and greenhouse experiment.Plant Disease93, 1146-1150.

Lepais O, Petit RJ, Guichoux E, Lavabre JE, Alberto F, Kremer A, Gerber S (2009) Species relative abundance and direction of introgression in oaks.Molecular Ecology18, 2228-2242.

Liancourt P, Viard-Crétat F, Michalet R (2009) Contrasting community responses to fertilization and the role of the competitive ability of dominant species.Journal of Vegetation Science20, 138-147.

Lorenzo Z, Burgarella C, López de Heredia U, Lumaret R, Petit RJ, Soto Á, Gil L (2009) Relevance of genetics for conservation policies: The case of the 67 remaining Minorcan cork oaks.Annals of Botany 104, 1069-1076.

Marçais B, Kavkova M and Desprez-Loustau M-L (2009) Phenotypic variation in phenology of ascospore production between European populations of oak powdery mildew.Annals of Forest Science66, 814.

Martín-García J, Diez JJ, Jactel H (2009) Towards standardised crown condition assessment in poplar plantations.Annals of Forest Science66, 308.

Mathieu J, Grimaldi M, Jouquet P, Rouland C, Lavelle P, Desjardins T, Rossi J-P (2009) Spatial patterns of grasses influence soil macrofauna biodiversity in Amazonian pastures.Soil Biology & Biochemistry41, 586-593.

Mench M, Bes C (2009) Assessment of ecotoxicity of topsoils from a wood treatment site.Pedosphere19, 143-155.

Mench M, Schwitzguébel J-P, Schroeder P, Bert V, Gawronski S, Gupta S (2009) Assessment of successful experiments and limitations of phytotechnologies: contaminant uptake, detoxification and sequestration, and consequences for food safety.Environmental Science and Pollution Research16, 876-900.

Ogée J, Barbour MM, Wingate L, Bert D, Bosc A, Stievenard M, Lambrot C, Pierre M, Bariac T, Loustau D, Dewar RC (2009) A single-substrate model to interpret intra-annual stable isotope signals in tree-ring cellulose.Plant Cell and Environment32, 1071-1090.

Onwubuya K, Cundy A, Puschenreiter M, Kumpiene J, Bone B, Greaves J, Teasdale P, Mench M, Tlustos P, Mikhalovsky S, Waite S, Friesl-Hanl W, Marschner B, Müller I (2009) Developing decision support tools for the selection of "gentle" remediation approaches.Science of The Total Environment407, 6132-6142.

Pakeman RJ, Pugnaire FI, Michalet R, Lortie CJ, Schiffers K, Maestre F, Travis J (2009) Is the cask of facilitation ready for bottling? A symposium on the connectivity and future directions of positive plant interactions.Biology Letters5, 577-579.

Papura D, Giresse X, Chauvin B, Caron H, Delmotte F, van Helden M (2009) Isolation and characterization of polymorphic microsatellite loci in the green leafhopper Empoasca vitis Goethe (Homoptera).Molecular Ecology Resources9, 827-829.

Petit RJ, Excoffier L (2009) Gene flow and species delimitation.Trends in Ecology & Evolution24, 386-393.

Porté AJ, Samalens J-C, Dulhoste R, Teissier Du Cros R, Bosc A, Meredieu C (2009) Using cover measurements to estimate aboveground understorey biomass in Maritime pine stands.Annals of Forest Science66, 307.

Reubens B, Pannemans B, Danjon F, De Proft M, De Baets S, De Baerdemaeker J, Poesen J, Muys B (2009) The effect of mechanical stimulation on root and shoot development of young containerised Quercus robur and Robinia pseudoacacia trees.Trees23, 1213–1228.

Robin C, Martin M, Capdevielle X, Traver C, Colinas C (2009) Cryphonectria parasitica vegetative compatibility type analysis of populations in south-western France and northern Spain.Plant Pathology58, 527–535.

Rossi J-P, Franc A, Rousseau GX (2009) Indicating soil quality and the GISQ.Soil Biology & Biochemistry41, 444-445.

Rossi J-P, Samalens J-C, Guyon D, van Halder I, Jactel H, Menassieu P, Piou D (2009) Multiscale spatial variation of the bark beetle Ips sexdentatus damage in a pine plantation forest (Landes de Gascogne, Southwestern France).Forest Ecology and Management257, 1551-1557.

Roussel M, Dreyer E, Montpied P, Le-Provost G, Guehl J-M, Brendel O (2009) The diversity of C-13 isotope discrimination in a Quercus robur full-sib family is associated with differences in intrinsic water use efficiency, transpiration efficiency, and stomatal conductance.Journal of Experimental Botany60, 2419-2431.

Saccone P, Delzon S, Pagès JP, Brun JJ, Michalet R (2009) The role of biotic interactions in altering tree seedling responses to an extreme climatic event.Journal of Vegetation Science20, 403-414.

Ueno S, Taguchi Y, Tomaru N, Tsumura Y (2009) Development of EST-SSR markers from an inner bark cDNA library of Fagus crenata (Fagaceae).Conservation Genetics10, 1477-1485.

Vallet P, Meredieu C, Seynave I, Bélouard T, Dhôte J-F (2009) Species substitution for carbon storage: Sessile oak versus Corsican pine in France as a case study.Forest Ecology and Management257, 1314-1323.

Vangronsveld J, Herzig R, Weyens N, Boulet J, Adriaensen K, Ruttens A, Thewys T, Vassilev A, Meers E, Nehnevajova E, Lelie D, Mench M (2009) Phytoremediation of contaminated soils and groundwater: lessons from the field.Environmental Science and Pollution Research16, 765-794.

Vincent D, Balesdent M-H, Gibon J, Claverol S, Lapaillerie D, Lomenech A-M, Blaise F, Rouxel T, Martin F, Bonneu M, Amselem J, Dominguez V, Howlett BJ, Wincker P, Lebrun M-H, Plomion C (2009) Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE.Electrophoresis30, 4118–4136.

Viscosi V, Lepais O, Gerber S, Fortini P (2009) Leaf morphological analyses in four European oak species (Quercus) and their hybrids: A comparison of traditional and geometric morphometric methods. Plant Biosystems143, 564-574.

Vitasse Y, Delzon S, Bresson CC, Michalet R, Kremer A (2009) Altitudinal differentiation among populations of temperate tree species growing in a common garden: early survival, growth and leaf phenology.Canadian Journal of Forest Research39, 1289-1269.

Vitasse Y, Delzon S, Dufrêne E, Pontailler J-Y, Louvet J-M, Kremer, A, Michalet R (2009) Leaf phenology sensitivity to temperature in European trees: Do within-species populations exhibit similar responses?Agricultural and Forest Meteorology149, 735-744.

Vitasse Y, Porté AJ, Kremer A, Michalet R, Delzon S (2009) Responses of canopy duration to temperature changes in four temperate tree species: relative contributions of spring and autumn leaf phenology.Oecologia161, 187-198.

Xiao S, Michalet R, Wang G, Chen SY (2009) The interplay between positive and negative interactions shapes the “community biomass-species richness” relationship.Oikos118, 1343-1348.

Abdallah F, Noumi Z, Touzard B, Belgacem AO, Neffati M, Chaieb M (2008) The influence of Acacia tortilis (Forssk.) Subsp raddiana (Savi) and livestock grazing on grass species composition, yield and soil nutrients in and environments of South Tunisia.Flora203,116-125.

Amiaud B, Touzard B, Bonis A, Bouzille JB (2008) After grazing exclusion, is there any modification of strategy for two guerrilla species: Elymus repens (L.) Gould and Agrostis stolonifera (L.)?Plant Ecology197, 107-117.

Augusto L, Bakker MR, Meredieu C (2008) Wood ash applications to temperate forest ecosystems - potential benefits and drawbacks.Plant and Soil306, 181-198.

Augusto L, Meredieu C, Bert D, Trichet P, Porté A, Bosc A, Lagane F, Loustau D, Pellerin S, Danjon F (2008) Improving models of forest nutrient export with equations that predict the nutrient concentration of tree compartments.Annals of Forest Science65, 808-808.

Barbaro L, Couzi L, Bretagnolle V, Nezan J, Vetillard F (2008) Multi-scale habitat selection and foraging ecology of the eurasian hoopoe (Upupa epops) in pine plantations.Biodiversity and Conservation17, 1073-1087.

Barrès B, Halkett F, Dutech C, Andrieux A, Pinon J, Frey P (2008) Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas. Infection, Genetics and Evolution8, 577-587.

Bergès L, Nepveu G, Franc A (2008) Effects of ecological factors on radial growth and wood density components of sessile oak (Quercus petraea Liebl.) in Northern France.Forest Ecology and Management255, 567-579.

Berndt L, Brockerhoff E, Jactel H (2008) Relevance of exotic pine plantations as a surrogate habitat for ground beetles (Carabidae) where native forest is rare.Biodiversity and Conservation17, 1171-1185.

Bes C, Mench M (2008) Remediation of copper-contaminated topsoils from a wood treatment facility using in situ stabilisation.Environmental Pollution156, 1128-1138.

Bouffier L, Charlot C, Raffin A, Rozenberg P, Kremer A (2008) Can wood density be efficiently selected at early stage in maritime pine (Pinus pinaster Ait.)?Annals of Forest Science65, 106-106.

Bouffier L, Raffin A, Kremer A (2008) Evolution of genetic variation for selected traits in successive breeding populations of maritime pine.Heredity101, 156-165.

Bouffier L, Rozenberg P, Raffin A, Kremer A (2008) Wood density variability in successive breeding populations of maritime pine.Canadian Journal of Forest Research38, 2148-2158.

Boulant N, Navas M-L, Corcket E, Lepart J (2008) Habitat amelioration and associational defence as main facilitative mechanisms in Mediterranean grasslands grazed by domestic livestock.Ecoscience15, 407-415.

Brendel O, Le Thiec D, Scotti-Saintagne C, Bodénès C, Kremer A, Guehl J-M (2008) Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L.Tree Genetics & Genomes4, 263-278.

Brin A, Meredieu Cl, Piou D, Brustel H, Jactel H (2008) Changes in quantitative patterns of dead wood in maritime pine plantations over time.Forest Ecology and Management256, 913-921.

Brockerhoff EG, Jactel H, Parrotta JA, Quine CP, Sayer J (2008) Plantation forests and biodiversity: oxymoron or opportunity?Biodiversity and Conservation17, 925-951.

Brooker RW, Maestre FT, Callaway RM, Lortie CL, Cavieres LA, Kunstler G, Liancourt P, Tielbörger K, Travis JMJ, Anthelme F, Armas C, Coll L, Corcket E, Delzon S, Forey E, Kikvidze Z, Olofsson J, Pugnaire F, Quiroz CL, Saccone P, Schiffers K, Seifan M, Touzard B, Michalet R (2008) Facilitation in plant communities: the past, the present, and the future.Journal of Ecology96, 18-34.

Buisson E, Anderson S, Holl KD, Corcket E, Hayes GF, Peeters A, Dutoit T (2008) Reintroduction of Nassella pulchra to California coastal grasslands: Effects of topsoil removal, plant neighbour removal and grazing.Applied Vegetation Science11, 195-204.

Cervera MT, Guevara MA, González Martínez SC, Soto A, Collada C, Plomion C, Savolainen O, Neale DB (2008) Genomics applied to the study of adaptation in pine species.Forest Systems14, 292-306.

Cordonnier T, Courbaud B, Berger F, Franc A (2008) Permanence of resilience and protection efficiency in mountain Norway spruce forest stands: A simulation study.Forest Ecology and Management256, 347-354.

Courty P-E, Franc A, Pierrat J-C, Garbaye J (2008) Temporal changes in the ectomycorrhizal community in two soil horizons of a temperate oak forest.Applied and Environmental Microbiology74, 5792.

Currat M, Ruedi M, Petit RJ, Excoffier L (2008) The hidden side of invasions: massive introgression by local genes.Evolution62, 1908-1920.

DAISIE (2008) Handbook of alien species in Europe. Springer, Dordrecht, Netherlands.

Danjon F, Reubens B (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation.Plant and Soil303, 1-34.

Danjon F, Barker DH, Drexhage M, Stokes A (2008) Using three-dimensional plant root architecture in models of shallow-slope stability.Annals of Botany101, 1281-1293.

Dewar R, Porté A (2008) Statistical mechanics unifies different ecological patterns.Journal of Theoretical Biology261, 389-403.

Dick CW, Hardy OJ, Jones FA, Petit RJ (2008) Spatial scales of pollen and seed-mediated gene flow in tropical rain forest trees.Tropical Plant Biology1, 20-33.

Dodet M, Petit RJ, Gasquez J (2008) Local spread of the invasive Cyperus esculentus (Cyperaceae) inferred using molecular genetic markers.Weed Research48, 19-27.

Duminil J, Grivet D, Ollier S, Jeandroz S, Petit RJ (2008) Multilevel control of organelle DNA sequence length in plants.Journal of Molecular Evolution66, 405-415.

Dutech C, Rossi JP, Fabreguettes O, Robin C (2008) Geostatistical genetic analysis for inferring the dispersal pattern of a partially clonal species: example of the chestnut blight fungus.Molecular Ecology17, 4597-4607.

Duursma RA, Kolari P, Perämäki M, Nikinmaa E, Hari P, Delzon S, Loustau D, Ilvesniemi H, Pumpanen J, Mäkelä A (2008) Predicting the decline in daily maximum transpiration rate of two pine stands during drought based on constant minimum leaf water potential and plant hydraulic conductance.Tree Physiology28, 265-276.

Eveno E, Collada C, Guevara MA, Léger V, Soto A, Díaz L, Léger P, González Martínez SC, Cervera MT, Plomion C (2008) Contrasting patterns of selection at Pinus pinaster Ait. drought stress candidate genes as revealed by genetic differentiation analyses.Molecular Biology and Evolution25, 417-437.

Fernandes L, Rocheta M, Cordeiro J, Pereira S, Gerber S, Oliveira MM, Ribeiro MM (2008) Genetic variation, mating patterns and gene flow in a Pinus pinaster Aiton clonal seed orchard.Annals of Forest Science65, 706-706.

Forey E, Chapelet B, Vitasse Y, Tilquin M, Touzard B, Michalet R (2008) The relative importance of disturbance and environmental stress at local and regional scales in French coastal sand dunes.Journal of Vegetation Science19, 493-502.

Garnier-Géré PH, Chikhi L (2008) Genetics of large populations and association studies. In: eLS. John Wiley & Sons.

Gimbert F, Mench M, Coeurdassier Ml, Badot P-M, de Vaufleury A (2008) Kinetic and dynamic aspects of soil-plant-snail transfer of cadmium in the field.Environmental Pollution152, 736-745.

Giraud T, Enjalbert J, Fournier E, Delmotte F, Dutech C (2008) Population genetics of fungal diseases of plants.Parasite15, 449-454.

Hampe A (2008) Fruit tracking, frugivore satiation, and their consequences for seed dispersal.Oecologia156, 137-145.

Henle K, Alard D, Clitherow J, Cobb P, Firbank L, Kull T, McCracken D, Moritz RFA, Niemelä J, Rebane M (2008) Identifying and managing the conflicts between agriculture and biodiversity conservation in Europe–A review.Agriculture, Ecosystems & Environment124, 60-71.

Hu FS, Hampe A, Petit RJ (2008) Paleoecology meets genetics: deciphering past vegetational dynamics.Frontiers in Ecology and the Environment7, 371-379.

Kremer A (2008) Social Broadleaves. EUFORGEN genetic conservation network.Forest Systems9, 117-123.

Magnani F, Mencuccini M, Borghetti M, Berninger F, Delzon S, Grelle A, Hari P, Kolari P, Kowalski AS, Lankreijer H, Law BE, Lindroth A, Loustau D, Manca G, Moncrieff J, Tedeschi V, Valentini R, Magnani F, Mencuccini M, Borghetti M, Berninger F, Delzon S, Grelle A, Hari P, Kolari P, Kowalski AS, Lankreijer H, Law BE, Lindroth A, Loustau D, Manca G, Moncrieff J, Tedeschi V, Valentini R (2008) Ecologically implausible carbon response? Reply.Nature451, E3-E4.

Mangin B, Garnier-Géré P, Cierco-Ayrolles C (2008) The estimator of the optimal measure of allelic association: Mean, variance and probability distribution when the sample size tends to infinity.Statistical Applications in Genetics and Molecular Biology7, 20.

Marchelli P, Caron H, Azpilicueta MM, Gallo LA (2008) A new set of highly polymorphic nuclear microsatellite markers for Nothofagus nervosa and related South American species.Silvae Genetica57, 82-84.

Mascheretti S, Croucher PJP, Vettraino A, Prospero S, Garbelotto M (2008) Reconstruction of the sudden oak death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum.Molecular Ecology17, 2755-2768.

Mougou A, Dutech C, Desprez-Loustau M-L (2008) New insights into the identity and origin of the causal agent of oak powdery mildew in Europe.Forest Pathology38, 275-287.

Paiva J, Garcès M, Alves A, Garnier-Géré P, Rodrigues JC, Lalanne C, Porcon S, Le Provost G, da Silva Perez D, Brach J, Frigerio JM, Claverol S, Barre A, Fevereiro P, Plomion C (2008) Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue.New Phytologist178, 283-301.

Paiva JAP, Garnier-Géré PH, Rodrigues JC, Alves A, Santos S, Graça J, Le Provost G, Chaumeil P, Da Silva-Perez D, Bosc A, Fevereiro P, Plomion C (2008) Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season.New Phytologist179, 1080-1094.

Petit RJ (2008) On the falsifiability of the nested clade phylogeographic analysis method.Molecular Ecology17, 1404-1404.

Petit RJ (2008) The coup de grâce for the nested clade phylogeographic analysis?Molecular Ecology17, 516-518.

Petit RJ, Hu FS, Dick CW (2008) Forests of the past: a window to future changes.Science320, 1450.

Peyrard N, Dieckmann U, Franc A (2008) Long-range correlations improve understanding of the influence of network structure on contact dynamics.Theoretical Population Biology73, 383-394.

Prospero S, Lung-Escarmant B, Dutech C (2008) Genetic structure of an expanding Armillaria root rot fungus (Armillaria ostoyae) population in a managed pine forest in southwestern France.Molecular Ecology17, 3366-3378.

Rekik I, Salimonti A, Kamoun NG, Muzzalupo I, Lepais O, Gerber S, Perri E, Rebai A (2008) Characterization and identification of Tunisian olive tree varieties by microsatellite markers.HortScience43, 1371-1376.

Renella G, Landi L, Ascher J, Ceccherini MT, Pietramellara G, Mench M, Nannipieri P (2008) Long-term effects of aided phytostabilisation of trace elements on microbial biomass and activity, enzyme activities, and composition of microbial community in the Jales contaminated mine spoils.Environmental Pollution152, 702-712.

Settele J, Kudrna O, Harpke A, Kühn I, van Swaay C, Verovnik R, Warren M, Wiemers M, Hanspach J, Hickler T, Kühn E, van Halder I, Veling K, Vliegenthart A, Wynhoff I, Schweiger O (2008) Climatic risk atlas of European butterflies.BioRisk1, 1-712.

Terrab A, Hampe A, Lepais O, Talavera S, Vela E, Stuessy TF (2008) Phylogeography of North African Atlas cedar (Cedrus atlantica, Pinaceae): Combined molecular and fossil data reveal a complex Quaternary history.American Journal of Botany95, 1262-1269.

Thomas F, Rossi J-P, Decaëns T, Grimaldi M, Lavelle P, Fernando da Silva Martins P, Garnier-Zarli E (2008) Comparative analysis of Andiodrilus pachoensis casts in forests and pastures of South-Eastern Amazon (Brazil).European Journal of Soil Biology44, 545-553.

Vacher C, Piou D, Desprez-Loustau M-L (2008) Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history.PLoS One3, e1740.

Vacher C, Vile D, Helion E, Piou D, Desprez-Loustau M-L (2008) Distribution of parasitic fungal species richness: influence of climate versus host species diversity.Diversity and Distributions14, 786-798.

Valcu C-M, Lalanne C, Müller-Starck G, Plomion C, Schlink K (2008) Protein polymorphism between 2 Picea abies populations revealed by 2-dimensional gel electrophoresis and tandem mass spectrometry.Journal of Heredity99, 364-375.

Valcu CM, Lalanne Cl, Plomion C, Schlink K (2008) Heat induced changes in protein expression profiles of Norway spruce (Picea abies) ecotypes from different elevations.Proteomics8, 4287-4302.

van Halder I, Barbaro L, Corcket E, Jactel H (2008) Importance of semi-natural habitats for the conservation of butterfly communities in landscapes dominated by pine plantations.Biodiversity and Conservation17, 1149-1169.

Vendramin GG, Fady B, González-Martínez SC, Hu FS, Scotti I, Sebastiani F, Soto Á, Petit RJ (2008) Genetically depauperate but widespread: the case of an emblematic Mediterranean pine.Evolution62, 680-688.

Vincent D, Plomion C, Balesdent MH, Blaise F, Rouxel T, Gibon J, Martin F, Claverol S, Bonneu M, Lebrun MH (2008) Hunting fungal secreted proteins down.Comparative Biochemistry and Physiology-Part A: Molecular & Integrative Physiology150, S50-S50.

Anthelme F, Michalet R, Saadou M (2007) Positive associations involving the tussock grass Panicum turgidum Forssk. in the Aïr-Ténéré Reserve, Niger. Journal of Arid Environments 68, 348-362.

Austerlitz F, Dutech C, Smouse PE, Davis F, Sork VL (2007) Estimating anisotropic pollen dispersal: a case study in Quercus lobata.Heredity99, 193-204.

Barbaro L, Rossi J-P, Vetillard F, Nezan J, Jactel H (2007) The spatial distribution of birds and carabid beetles in pine plantation forests: the role of landscape composition and structure.Journal of Biogeography34, 652-664.

Barot S, Rossi J-P, Lavelle P (2007) Self-organization in a simple consumer-resource system, the example of earthworms.Soil Biology & Biochemistry39, 2230-2240.

Bou Dagher-Kharrat M, Mariette S, Lefèvre F, Fady B, Grenier-de March G, Plomion C, Savouré A (2007) Geographical diversity and genetic relationships among Cedrus species estimated by AFLP.Tree Genetics & Genomes3, 275-285.

Bucci G, González-Martínez SC, Le Provost G, Plomion C, Ribeiro M, Sebastiani F, Alía R, Vendramin GG (2007) Range-wide phylogeography and gene zones in Pinus pinaster Ait. revealed by chloroplast microsatellite markers.Molecular Ecology16, 2137-2153.

Cloutier D, Hardy OJ, Caron H, Ciampi AY, Degen B, Kanashiro M, Schoen DJ (2007) Low inbreeding and high pollen dispersal distances in populations of two Amazonian forest tree species.Biotropica39, 406-415.

da Silva Perez D, Guillemain A, Alazard P, Plomion C, Rozenberg P, Carlos Rodrigues J, Alves A, Chantre G (2007) Improvement of Pinus pinaster Ait. elite trees selection by combining near infrared spectroscopy and genetic tools.Holzforschung61, 611-622.

Desprez-Loustau M-L, Robin C, Buée M, Courtecuisse R, Garbaye J, Suffert F, Sache I, Rizzo DM (2007) The fungal dimension of biological invasions.Trends in Ecology & Evolution22, 472-480.

Desprez-Loustau M-L, Robin C, Reynaud G, Déqué M, Badeau V, Piou D, Husson C, Marçais B (2007) Simulating the effects of a climate-change scenario on the geographical range and activity of forest-pathogenic fungi. Canadian Journal of Plant Pathology29, 101-120.

Duminil J, Fineschi S, Hampe A, Jordano P, Salvini D, Vendramin GG, Petit RJ (2007) Can population genetic structure be predicted from life-history traits?The American Naturalist169, 662-672.

Dutech C, Enjalbert Jr, Fournier E, Delmotte Fo, Barres B, Carlier J, Tharreau D, Giraud T (2007) Challenges of microsatellite isolation in fungi.Fungal Genetics and Biology44, 933-949.

Folgarait PJ, Gorosito N, Pizzio R, Rossi J-P, Fernandez J (2007) Camponotus punctulatus ant's demography: a temporal study across land-use types and spatial scales.Insectes Sociaux54, 42-52.

Frettinger P, Derory J, Herrmann S, Plomion C, Lapeyrie F, Oelmäller R, Martin F, Buscot F (2007) Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum.Planta225, 331-340.

Hampe A, Petit RJ (2007) Ever deeper phylogeographies: trees retain the genetic imprint of Tertiary plate tectonics.Molecular Ecology16, 5113-5114.

Jactel H, Brockerhoff EG (2007) Tree diversity reduces herbivory by forest insects.Ecology Letters10, 835-848.

Kremer A, Casasoli M, Barreneche T, Bodénès C, Sisco P, Kubisiak T, Scalfi M, Leonardi S, Bakker E, Buiteveld J, Romero-Severson J, Arumuganathan K, Derory J, Scotti-Saintagne C, Roussel G, Bertocchi M, Lexer C, Porth I, Hebard F, Clark C, Carlson J, Plomion C, Koelewijn H-P, Villani F (2007) Fagaceae trees. In: Kole, C.R. (ed.). Genome Mapping & Molecular Breeding, vol. 7: Forest Trees, pp. 161-187. Springer-Verlag, Berlin.

Kubisiak TL, Dutech C, Milgroom MG (2007) Fifty-three polymorphic microsatellite loci in the chestnut blight fungus, Cryphonectria parasitica.Molecular Ecology Notes7, 428-432.

Kumar S, Gerber S, Richardson TE, Gea L (2007) Testing for unequal paternal contributions using nuclear and chloroplast SSR markers in polycross families of radiata pine.Tree Genetics & Genomes3, 207-214.

Le Provost G, Herrera R, Paiva JA, Chaumeil P, Salin F, Plomion C (2007) A micromethod for high throughput RNA extraction in forest trees.Biological Research40, 291-297.

Loustau D, Ogée J, Dufrêne E, Déqué M, Dupouey JL, Badeau V, Viovy N, Ciais P, Desprez-Loustau M-L, Roques A (2007) Impacts of climate change. CABI Publishing.

Michalet R (2007) Ecological responses to the 1980 eruption of Mount St Helens.Mountain Research and Development27, 98-99.

Michalet R (2007) Highlighting the multiple drivers of change in interactions along stress gradients.New Phytologist173, 3-6.

Morozov AY, Robin C, Franc A (2007) A simple model for the dynamics of a host-parasite-hyperparasite interaction.Journal of Theoretical Biology249, 246-253.

Parelle J, Zapater M, Scotti-Saintagne C, Kremer A, Jolivet Y, Dreyer E, Brendel O (2007) Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns.Plant, Cell & Environment30, 422-434.

Perez DD, Guillemain A, Alazard P, Plomion C, Rozenberg P, Rodrigues JC, Alves A, Chantre G (2007) Improvement of Pinus pinaster Ait. elite trees selection by combining near infrared spectroscopy and genetic tools.Holzforschung61, 611-622.

Petit RJ, Vendramin GG (2007) Plant phylogeography based on organelle genes: an introduction. In: Weiss S, Ferrand N, eds. Phylogeography of Southern European Refugia. Springer, pp. 23-97.

Plomion C, Chagné D, Pot D, Kumar S, Wilcox P, Burdon R, Prat D, Peterson D, Paiva J, Chaumeil P (2007) Pines. In: Kole, C.R. (ed.). Genome Mapping & Molecular Breeding, vol. 7: Forest Trees, pp. 29-92. Springer-Verlag, Berlin.

Prida A, Ducousso A, Petit RJ, Nepveu G, Puech J-L (2007) Variation in wood volatile compounds in a mixed oak stand: strong species and spatial differentiation in whisky-lactone content.Annals of Forest Science64, 313-320.

REX Consortium (2007) Structure of the scientific community modelling the evolution of resistance.PLoS One2, e1275.

Sallé A, Arthofer W, Lieutier F, Stauffer C, Kerdelhué C (2007) Phylogeography of a host-specific insect: genetic structure of Ips typographus in Europe does not reflect past fragmentation of its host.Biological Journal of the Linnean Society 90, 239-246.

Samalens JC, Rossi J-P, Guyon D, van Halder I, Menassieu P, Piou D, Jactel H (2007) Adaptive roadside sampling for bark beetle damage assessment.Forest Ecology and Management253, 177-187.

Santos H, Rousselet J, Magnoux E, Paiva M-R, Branco M, Kerdelhué C (2007) Genetic isolation through time: allochronic differentiation of a phenologically atypical population of the pine processionary moth.Proceedings of the Royal Society B: Biological Sciences274, 935-941.

Simonato M, Mendel Z, Kerdelhué C, Rousselet J, Magnoux E, Salvato P, Roques A, Battisti A, Zane L (2007) Phylogeography of the pine processionary moth Thaumetopoea wilkinsoni in the Near East.Molecular Ecology16, 2273 - 2283.

Anderson LL, Hu FS, Nelson DM, Petit RJ, Paige KN (2006) Ice-age endurance: DNA evidence of a white spruce refugium in Alaska.Proceedings of the National Academy of Sciences103, 12447-12450.

Barres B, Dutech C, Andrieux A, Caron H, Pinon J, Frey P (2006) Isolation and characterization of 15 microsatellite loci in the poplar rust fungus, Melampsora larici-populina, and cross-amplification in related species.Molecular Ecology Notes6, 60-64.

Bialozyt R, Ziegenhagen B, Petit RJ (2006) Contrasting effects of long distance seed dispersal on genetic diversity during range expansion.Journal of Evolutionary Biology19, 12-20.

Branco M, Jactel H, Franco JC, Mendel Z (2006) Modelling response of insect trap captures to pheromone dose.Ecological Modelling197, 247-257.

Branco M, Lettere M, Franco JC, Binazzi A, Jactel H (2006) Kairomonal response of predators to three pine bast scale sex pheromones.Journal of Chemical Ecology32, 1577-1586.

Breuillin F, Dutech C, Robin C (2006) Genetic diversity of the chestnut blight fungus Cryphonectria parasitica in four French populations assessed by microsatellite markers. Mycological Research110, 288-296.

Brockerhoff EG, Liebhold AM, Jactel H (2006) The ecology of forest insect invasions and advances in their management. Canadian Journal of Forest Research36, 263-268.

Buisson E, Holl KD, Anderson S, Corcket E, Hayes GF, Torre F, Peteers A, Dutoit T (2006) Effect of seed source, topsoil removal, and plant neighbor removal on restoring California coastal prairies.Restoration Ecology14, 569-577.

Carnus J-M, Parrotta J, Brockerhoff E, Arbez M, Jactel H, Kremer A, Lamb D, Ohara K, Walters B (2006) Planted forests and biodiversity.Journal of Forestry104, 65-77.

Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl J-M, Villani F, Kremer A (2006) Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map.Genetics172, 533-546.

Cordonnier T, Courbaud B, Franc A (2006) The effect of colonization and competition processes on the relation between disturbance and diversity in plant communities.Journal of Theoretical Biology243, 1-12.

Degen B, Blanc L, Caron H, Maggia L, Kremer A, Gourlet-Fleury S (2006) Impact of selective logging on genetic composition and demographic structure of four tropical tree species.Biological Conservation131, 386-401.

Deguilloux MF, Bertel L, Celant A, Pemonge MH, Sadori L, Magri D, Petit RJ (2006) Genetic analysis of archaeological wood remains: first results and prospects.Journal of Archaeological Science33, 1216-1227.

Derory J, Léger P, Garcia V, Schaeffer J, Hauser M-T, Salin F, Luschnig C, Plomion C, Glössl J, Kremer A (2006) Transcriptome analysis of bud burst in sessile oak (Quercus petraea).New Phytologist170, 723-738.

Desprez-Loustau M-L, Husson C, Badeau V, Déqué M (2006) Symposium: The effects of climate change on tree diseases.Canadian Journal of Plant Pathology28, 385-386.

Desprez-Loustau M-L, Marcais B, De La Rocque S (2006) Facteurs climatiques et maladies dans les écosystèmes naturels et agroécosystèmes.Biofutur32, 37-40.

Desprez-Loustau M-L, Marçais B, Nageleisen L-M, Piou D, Vannini A (2006) Interactive effects of drought and pathogens in forest trees.Annals of Forest Science63, 597-612.

Di Michele M, Chiatante D, Plomion C, Scippa GS (2006) A proteomic analysis of Spanish broom (Spartium junceum L.) root growing on a slope condition.Plant Science170, 926-935.

Duminil J, Caron H, Scotti I, Cazal S-O, Petit RJ (2006) Blind population genetics survey of tropical rainforest trees.Molecular Ecology15, 3505-3513.

Ernoult A, Freiré-Diaz S, Langlois E, Alard D (2006) Are similar landscapes the result of similar histories?Landscape Ecology21, 631-639.

Ernoult A, Tremauville Y, Cellier D, Margerie P, Langlois E, Alard D (2006) Potential landscape drivers of biodiversity components in a flood plain: Past or present patterns?Biological Conservation127, 1-17.

Geebelen W, Sappin-Didier V, Ruttens A, Carleer R, Yperman J, Bongue-Boma K, Mench M, Van der Lelie N, Vangronsveld J (2006) Evaluation of cyclonic ash, commercial Na-silicates, lime and phosphoric acid for metal immobilisation purposes in contaminated soils in Flanders (Belgium).Environmental Pollution144, 32-39.

Gibb AR, Comeskey D, Berndt L, Brockerhoff EG, El-Sayed AM, Jactel H, Suckling DM (2006) Identification of sex pheromone components of a New Zealand geometrid moth, the common forest looper Pseudocoremia suavis, reveals a possible species complex.Journal of Chemical Ecology32, 865-879.

Grivet D, Deguilloux M, Petit RJ, Sork VL (2006) Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe.Molecular Ecology15, 4085-4093.

Hardy OJ, Maggia L, Bandou E, Breyne P, Caron H, Chevallier M-H, Doligez A, Dutech C, Kremer A, Latouche-Hallé C (2006) Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species.Molecular Ecology15, 559-571.

Horn A, Roux-Morabito G, Lieutier F, Kerdelhué C (2006) Phylogeographic structure and past history of the circum-Mediterranean species Tomicus destruens Woll. (Coleoptera: Scolytinae).Molecular Ecology15, 1603-1615.

Jactel H, Menassieu P, Vétillard F, Barthélémy B, Piou D, Frérot B, Rousselet J, Goussard F, Branco M, Battisti A (2006) Population monitoring of the pine processionary moth (Lepidoptera: Thaumetopoeidae) with pheromone-baited traps.Forest Ecology and Management235, 96-106.

Jactel H, Ménassieu P, Vétillard F, Gaulier A, Samalens JC, Brockerhoff EG (2006) Tree species diversity reduces the invasibility of maritime pine stands by the bast scale, Matsucoccus feytaudi (Homoptera: Margarodidae).Canadian Journal of Forest Research36, 314-323.

Jiménez J-J, Decaëns T, Rossi J-P (2006) Stability of the spatio-temporal distribution and niche overlap in neotropical earthworm assemblages.Acta Oecologica30, 299-311.

Jiménez J-J, Rossi J-P (2006) Spatial dissociation between two endogeic earthworms in the Colombian "Llanos".European Journal of Soil Biology42, S218-S224.

Julien M-P, Alard D, Balent G (2006) Patterns of ash (Fraxinus excelsior L.) colonization in mountain grasslands: the importance of management practices.Plant Ecology183, 177-189.

Kerdelhué C, Decroocq S (2006) Characterization of eight new microsatellite loci in the invading maritime pine bast scale Matsucoccus feytaudi (Hemiptera: Coccoidea: Margarodidae).Molecular Ecology Notes6, 1168-1170.

Kerdelhué C, Magnoux E, Lieutier F, Roques A, Rousselet J (2006) Comparative population genetic study of two oligophagous insects associated with the same hosts.Heredity97, 38-45.

Kremer A (2006) Wallenberg price 2006.Annals of Forest Science63, 809-811.

Kumpiene J, Ore S, Renella G, Mench M, Lagerkvist A, Maurice C (2006) Assessment of zerovalent iron for stabilization of chromium, copper, and arsenic in soil.Environmental Pollution144, 62-69.

Lavelle P, Decaëns T, Aubert M, Barot S, Blouin M, Bureau F, Margerie P, Mora P, Rossi J-P (2006) Soil invertebrates and ecosystem services.European Journal of Soil Biology42, S3-S15.

Lepais O, Léger V, Gerber S (2006) High throughput microsatellite genotyping in oak species.Silvae Genetica55, 238.

Lexer C, Kremer A, Petit RJ (2006) Shared alleles in sympatric oaks: recurrent gene flow is a more parsimonious explanation than ancestral polymorphism.Molecular Ecology15, 2007-2012.

Liepelt S, Sperisen C, Deguilloux M-F, Petit RJ, Kissling R, Spencer M, De Beaulieu J-L, Taberlet P, Gielly L, Ziegenhagen B (2006) Authenticated DNA from ancient wood remains.Annals of Botany98, 1107.

Magri D, Vendramin GG, Comps B, Dupanloup I, Geburek T, Gömöry D, Latałowa M, Litt T, Paule L, Roure JM, Tantau I, van der Knaap W, Petit RJ, de Beaulieu J-L (2006) A new scenario for the Quaternary history of European beech populations: palaeobotanical evidence and genetic consequences.New Phytologist171, 199-221.

Mench M, Renella G, Gelsomino A, Landi L, Nannipieri P (2006) Biochemical parameters and bacterial species richness in soils contaminated by sludge-borne metals and remediated with inorganic soil amendments.Environmental Pollution144, 24-31.

Mench M, Vangronsveld J, Beckx C, Ruttens A (2006) Progress in assisted natural remediation of an arsenic contaminated agricultural soil.Environmental Pollution144, 51-61.

Mench M, Vangronsveld J, Lepp N (2006) Soil and sediment remediation [SSR]. Environmental Pollution144, 1.

Michalet R (2006) Is facilitation in arid environments the result of direct or complex interactions?New Phytologist169, 3-6.

Michalet R, Brooker RW, Cavieres LA, Kikvidze Z, Lortie CJ, Pugnaire FI, Valiente-Banuet A, Callaway RM (2006) Do biotic interactions shape both sides of the humped-back model of species richness in plant communities?Ecology Letters9, 767-773.

Mora P, Seuge C, Rossi J-P, Rouland C (2006) Abundance of biogenic structures of earthworms and termites in a mango orchard.European Journal of Soil Biology42, S250-S253.

Nahmani J, Lavelle P, Rossi J-P (2006) Does changing the taxonomical resolution alter the value of soil macroinvertebrates as bioindicators of metal pollution?Soil Biology and Biochemistry38, 385-396.

Pagès J-P, Michalet R (2006) Contrasted responses of two understorey species to direct and indirect effects of a canopy gap.Plant Ecology187, 179-187.

Papura D, Giresse X, Caron H, Delmotte F, van Helden M (2006) Ten polymorphic microsatellite markers for Scaphoideus titanus, the vector of flavescence dorée phytoplasma.Molecular Ecology Notes6, 1114-1116.

Parelle J, Brendel O, Bodénès C, Berveiller D, Dizengremel P, Jolivet Y, Dreyer E (2006) Differences in morphological and physiological responses to water-logging between two sympatric oak species (Quercus petraea [Matt.] Liebl., Quercus robur L.).Annals of Forest Science63, 849-859.

Petit RJ, Hampe A (2006) Some evolutionary consequences of being a tree.Annual Reviews of Ecology, Evolution and Systematics37, 187-214.

Plomion C, Lalanne C, Claverol S, Meddour H, Kohler A, Bogeat-Triboulot M-B, Barre A, Le Provost G, Dumazet H, Jacob D (2006) Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins.Proteomics6, 6509-6527.

Ponge J-F, Topoliantz S, Ballof S, Rossi J-P, Lavelle P, Betsch JM, Gaucher P (2006) Ingestion of charcoal by the Amazonian earthworm Pontoscolex corethrurus: A potential for tropical soil fertility. Soil Biology and Biochemistry38, 2008-2009.

Pot D, Rodrigues J-C, Rozenberg P, Chantre G, Tibbits J, Cahalan C, Pichavant F, Plomion C (2006) QTLs and candidate genes for wood properties in maritime pine (Pinus pinaster Ait.).Tree Genetics & Genomes2, 10-24.

Prida A, Boulet J-C, Ducousso A, Nepveu G, Puech J-L (2006) Effect of species and ecological conditions on ellagitannin content in oak wood from an even-aged and mixed stand of Quercus robur L. and Quercus petraea Liebl.Annals of Forest Science63, 415-424.

Renella G, Egamberdiyeva D, Landi L, Mench M, Nannipieri P (2006) Microbial activity and hydrolase activities during decomposition of root exudates released by an artificial root surface in Cd-contaminated soils.Soil Biology and Biochemistry38, 702-708.

Richardson DM, Petit RJ (2006) Pines as invasive aliens: outlook on transgenic pine plantations in the southern hemisphere. In: Landscapes, Genomics and Transgenic Conifers, pp. 169-188.

Robin C, Morel O, Vettraino A-M, Perlerou C, Diamandis S, Vannini A (2006) Genetic variation in susceptibility to Phytophthora cambivora in European chestnut (Castanea sativa).Forest Ecology and Management226, 199-207.

Rossi J-P, Huerta E, Fragoso C, Lavelle P (2006) Soil properties inside earthworm patches and gaps in tropical grassland (la Mancha, Veracruz, Mexico).European Journal of Soil Biology42, S284-S288.

Rossi J-P, Mathieu J, Cooper M, Grimaldi M (2006) Soil macrofaunal biodiversity in Amazonian pastures: Matching sampling with patterns.Soil Biology and Biochemistry38, 2178-2187.

Ruttens A, Colpaert JV, Mench M, Boisson J, Carleer R, Vangronsveld J (2006) Phytostabilization of a metal contaminated sandy soil. II: Influence of compost and/or inorganic metal immobilizing soil amendments on metal leaching.Environmental Pollution144, 533-539.

Ruttens A, Mench M, Colpaert JV, Boisson J, Carleer R, Vangronsveld J (2006) Phytostabilization of a metal contaminated sandy soil. I: Influence of compost and/or inorganic metal immobilizing soil amendments on phytotoxicity and plant availability of metals.Environmental Pollution144, 524-532.

Vasconcelos T, Horn A, Lieutier F, Branco M, Kerdelhué C (2006) Distribution and population genetic structure of the Mediterranean pine shoot beetle Tomicus destruens in the Iberian Peninsula and Southern FranceAgricultural and Forest Entomology8, 103-111.

Aguinagalde I, Hampe A, Mohanty A, Martín JP, Duminil J, Petit RJ (2005) Effects of life-history traits and species distribution on genetic structure at maternally inherited markers in European trees and shrubs.Journal of Biogeography32, 329-339.

Alard D, Chabrerie O, Dutoit T, Roche P, Langlois E (2005) Patterns of secondary succession in calcareous grasslands: can we distinguish the influence of former land uses from present vegetation data?Basic and Applied Ecology6, 161-173.

Aubert M, Hedde M, Decaens T, Margerie P, Alard D, Bureau F (2005) Facteurs contrôlant la variabilité spatiale de la macrofaune du sol dans une hêtraie pure et une hêtraie-charmaie.Comptes Rendus Biologies328, 57-74.

Barbaro L, Pontcharraud L, Vétillard F, Guyon D, Jactel H (2005) Comparative responses of bird, carabid, and spider assemblages to stand and landscape diversity in maritime pine plantation forests.Ecoscience12, 110-121.

Blanc J-F, Lalanne C, Plomion C, Schmitter J-M, Bathany K, Gion J-M, Bioulac-Sage P, Balabaud C, Bonneu M, Rosenbaum J (2005) Proteomic analysis of differentially expressed proteins in hepatocellular carcinoma developed in patients with chronic viral hepatitis C.Proteomics5, 3778-3789.

Brockerhoff EG, Berndt LA, Jactel H (2005) Role of exotic pine forests in the conservation of the critically endangered New Zealand ground beetle Holcaspis brevicula (Coleoptera: Carabidae).New Zealand Journal of Ecology29, 37-43.

Brooker R, Kikvidze Z, Pugnaire FI, Callaway RM, Choler P, Lortie CJ, Michalet R (2005) The importance of importance.Oikos109, 63-70.

Cavers S, Degen B, Caron H, Lemes MR, Margis R, Salgueiro F, Lowe AJ (2005) Optimal sampling strategy for estimation of spatial genetic structure in tree populations.Heredity95, 281-289.

Coart E, Glabeke SV, Petit RJ, Bockstaele EV, Roldán-Ruiz I (2005) Range wide versus local patterns of genetic diversity in hornbeam (Carpinus betulus L.).Conservation Genetics6, 259-273.

Colpaert N, Cavers S, Bandou E, Caron H, Gheysen G, Lowe AJ (2005) Sampling tissue for DNA analysis of trees: trunk cambium as an alternative to canopy leaves.Silvae Genetica54, 265-269.

Dutech C, Sork VL, Irwin AJ, Smouse PE, Davis FW (2005) Gene flow and fine-scale genetic structure in a wind-pollinated tree species, Quercus lobata (Fagaceaee).American Journal of Botany92, 252-261.

Ferry-Dumazet H, Houel G, Montalent P, Moreau L, Langella O, Negroni L, Vincent D, Lalanne C, De Daruvar A, Plomion C (2005) PROTICdb: A web-based application to store, track, query, and compare plant proteome data.Proteomics5, 2069-2081.

Gion J-M, Lalanne C, Le Provost G, Ferry-Dumazet H, Paiva J, Chaumeil P, Frigerio J-M, Brach J, Barré A, de Daruvar A (2005) The proteome of maritime pine wood forming tissue.Proteomics5, 3731-3751.

Guevara MA, Chagné D, Almeida MH, Byrne M, Collada C, Favre JM, Harvengt L, Jeandroz S, Orazio C, Plomion C (2005) Isolation and characterization of nuclear microsatellite loci in Pinus pinaster Ait.Molecular Ecology Notes5, 57-59.

Gugerli F, Parducci L, Petit RJ (2005) Ancient plant DNA: review and prospects.New Phytologist166, 409-418.

Hampe A, Petit RJ (2005) Conserving biodiversity under climate change: the rear edge matters.Ecology Letters8, 461-467.

Jactel H, Brockerhoff E, Duelli P (2005) A test of the biodiversity-stability theory: meta-analysis of tree species diversity effects on insect pest infestations, and re-examination of responsible factors.Forest Diversity and Function176, 235-262.

Kikvidze Z, Pugnaire FI, Brooker RW, Choler P, Lortie CJ, Michalet R, Callaway RM (2005) Linking patterns and processes in alpine plant communities: a global study.Ecology86, 1395-1400.

Kremer A, Caron H, Cavers S, Colpaert N, Gheysen G, Gribel R, Lemes M, Lowe AJ, Margis R, Navarro C (2005) Monitoring genetic diversity in tropical trees with multilocus dominant markers.Heredity95, 274-280.

Liancourt P, Callaway RM, Michalet R (2005) Stress tolerance and competitive-response ability determine the outcome of biotic interactions.Ecology86, 1611-1618.

Liancourt P, Corcket E, Michalet R (2005) Stress tolerance abilities and competitive responses in a watering and fertilization field experiment.Journal of Vegetation Science16, 713-722.

Magni CR, Ducousso A, Caron H, Petit RJ, Kremer A (2005) Chloroplast DNA variation of Quercus rubra L. in North America and comparison with other Fagaceae.Molecular Ecology14, 513-524.

Mathieu J, Rossi J-P, Mora P, Lavelle P, da S. Martins PF, Rouland C, Grimaldi M (2005) Recovery of soil macrofauna communities after forest clearance in Eastern Amazonia, Brazil.Conservation Biology19, 1598-1605.

Petit RJ, Deguilloux M, Chat J, Grivet D, Garnier-Géré P, Vendramin GG (2005) Standardizing for microsatellite length in comparisons of genetic diversity.Molecular Ecology14, 885-890.

Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations.Molecular Ecology14, 689-701.

Petit RJ, Hampe A, Cheddadi R (2005) Climate changes and tree phylogeography in the Mediterranean.Taxon 54, 877-885.

Peyrard N, Franc A (2005) Cluster variation approximations for a contact process living on a graph.Physica A: Statistical Mechanics and its Applications358, 575-592.

Plomion C, Richardson T, MacKay J (2005) Advances in forest tree genomics.New Phytologist166, 713-717.

Porth I, Scotti-Saintagne C, Barreneche T, Kremer A, Burg K (2005) Linkage mapping of osmotic stress induced genes of oak.Tree Genetics & Genomes1, 31-40.

Pot D, McMillan L, Echt C, Le Provost G, Garnier-Géré P, Cato S, Plomion C (2005) Nucleotide variation in genes involved in wood formation in two pine species.New Phytologist167, 101-112.

Renella G, Mench M, Gelsomino A, Landi L, Nannipieri P (2005) Functional activity and microbial community structure in soils amended with bimetallic sludges.Soil Biology and Biochemistry37, 1498-1506.

Rossi J-P, Blanchart E (2005) Seasonal and land-use induced variations of soil macrofauna composition in the Western Ghats, southern India.Soil Biology and Biochemistry37, 1093-1104.

Salgueiro F, Caron H, De Souza MIF, Kremer A, Margis R (2005) Characterization of nuclear microsatellite loci in South American Araucariaceae species.Molecular Ecology Notes5, 256-258.

Scotti I, Burelli A, Cattonaro F, Chagné D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D (2005) Analysis of the distribution of marker classes in a genetic linkage map: a case study in Norway spruce (Picea abies Karst).Tree Genetics & Genomes1, 93-102.

Scotti-Saintagne C, Bertocchi E, Barreneche T, Kremer A, Plomion C (2005) Quantitative trait loci mapping for vegetative propagation in pedunculate oak.Annals of Forest Science62, 369-374.

Shi W, Kerdelhué C, Ye H (2005) Population genetics of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae), in Yunnan (China) based on mitochondrial DNA sequences.Environmental Entomology34, 977-983.

Veron V, Caron H, Degen B (2005) Gene flow and mating system of the tropical tree Sextonia rubra.Silvae Genetica54, 275-280.

Vettraino AM, Morel O, Perlerou C, Robin C, Diamandis S, Vannini A (2005) Occurrence and distribution of Phytophthora species in European chestnut stands, and their association with Ink Disease and crown decline.European Journal of Plant Pathology111, 169-180.

Amiaud B, Touzard B (2004) The relationships between soil seed bank, aboveground vegetation and disturbances in old embanked marshlands of Western France.Flora199, 25-35.

Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S, Smouse PE, Sork VL (2004) Using genetic markers to estimate the pollen dispersal curve.Molecular Ecology13, 937-954.

Azpilicueta MM, Caron H, Bodénès C, Gallo LA (2004) SSR markers for analysing South American Nothofagus species.Silvae Genetica53, 240-243.

Bahrman N, Costa P, Dubos C, Frigerio J-M, Lalanne C, Pionneau C, Gerber S (2004) Proteomics for genetic and physiological studies in forest trees: application in maritime pine. In: Molecular genetics and breeding of forest trees (eds. Kumar S, Fladung M), p. 53. Food Products Press, Binghmaton, NY.

Barbaro L, Dutoit T, Anthelme F, Corcket E (2004) Respective influence of habitat conditions and management regimes on prealpine calcareous grasslands.Journal of Environmental Management72, 261-275.

Barreneche T, Casasoli M, Russell K, Akkak A, Meddour H, Plomion C, Villani F, Kremer A (2004) Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs).Theoretical and Applied Genetics108, 558-566.

Bergot M, Cloppet E, Pérarnaud V, Déqué M, Marçais B, Desprez-Loustau M-L (2004) Simulation of potential range expansion of oak disease caused by Phytophthora cinnamomi under climate change.Global Change Biology10, 1539-1552.

Berndt L, Brockerhoff EG, Jactel H, Weis T, Beaton J (2004) Biology and rearing of Pseudocoremia suavis, an endemic looper (Lepidoptera: Geometridae) with a history of outbreaks on exotic conifers.New Zealand Entomologist27, 73-82.

Branco M, Jactel H, Silva EB, Binazzi A, Mendel Z (2004) Effect of trap design, trap size and pheromone dose on male capture of two pine bast scales species (Hemiptera: Matsucoccidae): implications for monitoring and mass-trapping.Agricultural and Forest Entomology6, 233-239.

Casasoli M, Pot D, Plomion C, Monteverdi MC, Barreneche T, Lauteri M, Villani F (2004) Identification of QTLs affecting adaptive traits in Castanea sativa Mill.Plant, Cell & Environment27, 1088-1101.

Chagné D, Chaumeil P, Ramboer A, Collada C, Guevara A, Cervera MT, Vendramin GG, Garcia V, Frigerio JM, Echt C (2004) Cross-species transferability and mapping of genomic and cDNA SSRs in pines.Theoretical and Applied Genetics109, 1204-1214.

Chat J, Jáuregui B, Petit RJ, Nadot S (2004) Reticulate evolution in kiwifruit (Actinidia, Actinidiaceae) identified by comparing their maternal and paternal phylogenies.American Journal of Botany91, 736-747.

Degen B, Bandou E, Caron H (2004) Limited pollen dispersal and biparental inbreeding in Symphonia globulifera in French Guiana.Heredity93, 585-591.

Deguilloux M-F, Pemonge M-H, Petit RJ (2004) DNA-based control of oak wood geographic origin in the context of the cooperage industry.Annals of Forest Science61, 97-104.

Deguilloux M-F, Pemonge M-H, Petit RJ (2004) Use of chloroplast microsatellites to differentiate oak populations.Annals of Forest Science61, 825-830.

González-Martínez SC, Mariette S, Ribeiro MM, Burban C, Raffin A, Chambel MR, Ribeiro CAM, Aguiar A, Plomion C, Alía R (2004) Genetic resources in maritime pine (Pinus pinaster Aiton): molecular and quantitative measures of genetic variation and differentiation among maternal lineages.Forest Ecology and Management197, 103-115.

Kremer A, Reviron MP (2004) Dynamics and conservation of genetic diversity in forest ecosystems.Forest Ecology and Management197, 1-2.

Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Kremer A (2004) Long-distance pollen flow and tolerance to selfing in a Neotropical tree species.Molecular Ecology13, 1055-1064.

Le Dantec L, Chagne D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio J-M, Chaumeil P, Léger P, Garcia V (2004) Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.Plant Molecular Biology54, 461-470.

Lortie CJ, Brooker RW, Choler P, Kikvidze Z, Michalet R, Pugnaire FI, Callaway RM (2004) Rethinking plant community theory.Oikos107, 433-438.

Lung-Escarmant B, Guyon D (2004) Temporal and spatial dynamics of primary and secondary infection by Armillaria ostoyae in a Pinus pinaster plantation.Phytopathology94, 125-131.

Marçais B, Bergot M, Pérarnaud V, Levy A, Desprez-Loustau M-L (2004) Prediction and mapping of the impact of winter temperature on the development of Phytophthora cinnamomi-induced cankers on red and pedunculate oak in France.Phytopathology94, 826-831.

Mathieu J, Rossi J-P, Grimaldi M, Mora P, Lavelle P, Rouland C (2004) A multi-scale study of soil macrofauna biodiversity in Amazonian pastures.Biology and Fertility of Soils40, 300-305.

Maurel M, Robin C, Simonneau T, Loustau D, Dreyer E, Desprez-Loustau M-L (2004) Stomatal conductance and root-to-shoot signalling in chestnut saplings exposed to Phytophthora cinnamomi or partial soil drying.Functional Plant Biology31, 41-51.

Parducci L, Petit RJ (2004) Ancient DNA-unlocking plants' fossil secrets.New Phytologist161, 335-339.

Petit RJ (2004) Biological invasions at the gene level.Diversity and Distributions10, 159-165.

Petit RJ, Bialozyt R, Garnier-Géré P, Hampe A (2004) Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations.Forest Ecology and Management197, 117-137.

Petit RJ, Bodénès C, Ducousso A, Roussel G, Kremer A (2004) Hybridization as a mechanism of invasion in oaks.New Phytologist161, 151-164.

Scotti-Saintagne C, Bodénès C, Barreneche T, Bertocchi E, Plomion C, Kremer A (2004) Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L.Theoretical and Applied Genetics109, 1648-1659.

Scotti-Saintagne C, Mariette S, Porth I, Goicoechea PG, Barreneche T, Bodénès C, Burg K, Kremer A (2004) Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.].Genetics168, 1615-1626.

Thomas F, Folgarait P, Lavelle P, Rossi JP (2004) Soil macrofaunal communities along an abandoned rice field chronosequence in Northern Argentina.Applied Soil Ecology27, 23-29.

Anthelme F, Michalet R, Barbaro L, Brun J-J (2003) Environmental and spatial influences of shrub cover (Alnus viridis DC.) on vegetation diversity at the upper treeline in the inner western Alps.Arctic, Antarctic, and Alpine Research35, 48-55.

Austerlitz F, Garnier-Géré PH (2003) Modelling the impact of colonisation on genetic diversity and differentiation of forest trees: interaction of life cycle, pollen flow and seed long-distance dispersal.Heredity90, 282-290.

Burban C, Petit RJ (2003) Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance.Molecular Ecology12, 1487-1495.

Chagné D, Brown G, Lalanne C, Madur D, Pot D, Neale D, Plomion C (2003) Comparative genome and QTL mapping between maritime and loblolly pines.Molecular Breeding12, 185-195.

Chat J, Decroocq S, Petit RJ (2003) A one-step organelle capture: gynogenetic kiwifruits with paternal chloroplasts.Proceedings of the Royal Society of London. Series B: Biological Sciences270, 783.

Corcket E, Callaway RM, Michalet R (2003) Insect herbivory and grass competition in a calcareous grassland: results from a plant removal experiment.Acta Oecologica24, 139-146.

Corcket E, Liancourt P, Callaway RM, Michalet R (2003) The relative importance of competition for two dominant grass species as affected by environmental manipulations in the field.Ecoscience10, 186-194.

Deguilloux MF, Pemonge MH, Bertel L, Kremer A, Petit RJ (2003) Checking the geographical origin of oak wood: molecular and statistical tools.Molecular Ecology12, 1629-1636.

Deguilloux M-F, Dumolin-Lapègue S, Gielly L, Grivet D, Petit RJ (2003) A set of primers for the amplification of chloroplast microsatellites in Quercus.Molecular Ecology Notes3, 24-27.

Dubos C, Le Provost G, Pot D, Salin F, Lalane C, Madur D, Frigerio J-M, Plomion C (2003) Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings.Tree Physiology23, 169-179.

Dubos C, Plomion C (2003) Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots.Plant Molecular Biology51, 249-262.

Dutech C, Joly HI, Jarne P (2003) Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana.Heredity 92, 69-77.

Dutech C, Maggia L, Tardy C, Joly HI, Jarne P (2003) Tracking a genetic signal of extinction-recolonization events in a neotropical tree species: Vouacapoua americana Aublet in French Guiana.Evolution57, 2753-2764.

Gerber S, Chabrier P, Kremer A (2003) FAMOZ: a software for parentage analysis using dominant, codominant and uniparentally inherited markers.Molecular Ecology Notes3, 479-481.

Grivet D, Petit RJ (2003) Chloroplast DNA phylogeography of the hornbeam in Europe: evidence for a bottleneck at the outset of postglacial colonization.Conservation Genetics4, 47-56.

Guerin L, Robin C (2003) Seasonal effect on infection and development of lesions caused by Cryphonectria parasitica in Castanea sativa.Forest Pathology33, 223-235.

Hampe A, Arroyo J, Jordano P, Petit RJ (2003) Rangewide phylogeography of a bird-dispersed Eurasian shrub: contrasting Mediterranean and temperate glacial refugia.Molecular Ecology12, 3415-3426.

Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Kremer A (2003) Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population.Heredity91, 181-190.

Le Corre V, Kremer A (2003) Genetic variability at neutral markers, quantitative trait loci and trait in a subdivided population under selection.Genetics164, 1205-1219.

Le Provost G, Paiva J, Pot D, Brach J, Plomion C (2003) Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein.Planta217, 820-830.

Michalet R, Rolland C, Joud D, Gafta D, Callaway RM (2003) Associations between canopy and understory species increase along a rainshadow gradient in the Alps: habitat heterogeneity or facilitation?Plant Ecology165, 145-160.

Pages J-P, Michalet R (2003) A test of the indirect facilitation model in a temperate hardwood forest of the northern French Alps.Journal of Ecology91, 932-940.

Pagès J-P, Pache G, Joud D, Magnan N, Michalet R (2003) Direct and indirect effects of shade on four forest tree seedlings in the French Alps.Ecology84, 2741-2750.

Petit RJ, Aguinagalde I, de Beaulieu J-L, Bittkau C, Brewer S, Cheddadi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Müller-Starck G, Demesure-Musch B, Palmé A, Martín JP, Rendell S, Vendramin GG (2003) Glacial refugia: Hotspots but not melting pots of genetic diversity.Science300, 1563-1565.

Plomion C, Cooke J, Richardson T, Mackay J, Tuskan G (2003) Report on the forest trees workshop at the plant and animal genome conference.Comparative and Functional Genomics4, 229-238.

Plomion C, Pionneau C, Baillères H (2003) Analysis of protein expression along the normal to tension wood gradient in Eucalyptus gunnii.Holzforschung57, 353-358.

Saintagne C, Bodenes C, Barreneche T, Pot D, Plomion C, Kremer A (2003) Distribution of genomic regions differentiating oak species assessed by QTL detection.Heredity92, 20-30.

Yazdani R, Nilsson J-E, Plomion C, Mathur G (2003) Marker trait association for autumn cold acclimation and growth rhythm in Pinus sylvestris.Scandinavian Journal of Forest Research18, 29-38.

Yazdani R, Scotti I, Jansson G, Plomion C, Mathur G (2003) Inheritance and diversity of simple sequence repeat (SSR) microsatellite markers in various families of Picea abies.Hereditas138, 219-227.