2023
Bournonville, C., Mori, K., Deslous, P., Decros, G., Blomeier, T., Mauxion, J. P., Jorly, J., Gadin, S., Cassan, C., Maucourt, M., Just, D., Brès, C., Rothan, C., Ferrand, C., Fernandez-Lochu, L., Bataille, L., Miura, K., Beven, L., Zurbriggen, M. D., Pétriacq, P., Gibon, Y., Baldet, P. (2023). Blue light promotes ascorbate synthesis by deactivating the PAS/LOV photoreceptor that inhibits GDP-L-galactose phosphorylase. The Plant cell, 35 (7), 2615-2634. DOI : 10.1093/plcell/koad108
Canlet, C., Deborde, C., Cahoreau, E., Da Costa, G., Gautier, R., Jacob, D., Jousse, C., Lacaze, M., Le Mao, I., Martineau, E., Peyriga, L., Richard, T., Silvestre, V., Traïkia, M., Moing, A., Giraudeau, P. (2023). NMR metabolite quantification of a synthetic urine sample: an inter-laboratory comparison of processing workflows. Metabolomics : Official journal of the Metabolomic Society, 19(7), 65. DOI : 10.1007/s11306-023-02028-4
Colombié, S., Prigent, S., Cassan, C., Hilbert-Masson, G., Renaud, C., Dell'Aversana, E., Carillo, P., Moing, A., Beaumont, C., Beauvoit, B., McCubbin, T., Nielsen, L. K., Gibon, Y. (2023). Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth-defence trade-off. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.16409
Decros, G., Dussarrat, T., Baldet, P., Cassan, C., Cabasson, C., Dieuaide-Noubhani, M., Destailleur, A., Flandin, A., Prigent, S., Mori, K., Colombié, S., Jorly, J., Gibon, Y., Beauvoit, B., Pétriacq, P. (2023). Enzyme-based kinetic modelling of ASC-GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability. The New phytologist. DOI : 10.1111/nph.19160
Dollinger, J., Pétriacq, P., Flandin, A., Samouelian, A. (2023). Soil metabolomics: A powerful tool for predicting and specifying pesticide sorption. Chemosphere, 139302. DOI : 10.1016/j.chemosphere.2023.139302
Großkinsky, D. K., Faure, J. D., Gibon, Y., Haslam, R. P., Usadel, B., Zanetti, F., Jonak, C. (2023). The potential of integrative phenomics to harness underutilized crops for improving stress resilience. Frontiers in plant science, 14, 1216337. DOI : 10.3389/fpls.2023.1216337
Helm, J., Salomón, R., L, Hilman, B., Muhr, J., Knohl, A., Steppe, K., Gibon, Y., Cassan, C., Hartmann, H. (2023). Differences between tree stem CO 2 efflux and O 2 influx rates cannot be explained by internal CO 2 transport or storage in large beech trees. Plant, Cell and Environment, 46 (9), 2680-2693. DOI : 10.1111/pce.14614
Lacrampe, N., Colombié, S., Dumont, D., Nicot, P., Lecompte, F., Lugan, R. (2023). Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems. Planta, 257(2), 41. DOI : 10.1007/s00425-022-04065-0
Lourkisti, R., Antoine, S., Pailly, O., Luro, F., Gibon, Y., Oustric, J., Santini, J., & Berti, L. (2023). GABA shunt pathway is stimulated in response to early defoliation-induced carbohydrate limitation in Mandarin fruits. Heliyon, 9(4), e15573. DOI : 10.1016/j.heliyon.2023.e15573
Moing, A., Berton, T., Roch, L., Diarrassouba, S., Bernillon, S., Arrivault, S., Deborde, C., Maucourt, M., Cabasson, C., Bénard, C., Prigent, S., Jacob, D., Gibon, Y., Lemaire-Chamley, M. (2023). Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites. BMC plant biology, 23(1), 365. DOI : 10.1186/s12870-023-04370-0
2022
Andrieu, M.-H., Atienza, I., Cassan, C., Marmagne, A., Just, D., Bienvenut, W. V., Gibon, Y., Colombie, S. (2022). 15N nitrogen labelling on tomato fruit pericarp using plants cultivated in semi-controlled green house conditions - Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard. NOV'AE, Numéro Régulier juin 2022(05). DOI : 10.17180/novae-2022-NO-art05
Borghi, M., Perez de Souza, L., Tohge, T., Mi, J., Melandri, G., Proost, S., Martins, M., Al-Babili, S., Bouwmeester, H., Fernie, A. (2022). High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology, 190(1), 319-339. DOI : 10.1093/plphys/kiac253
Bourafai-Aziez, A., Jacob, D., Charpentier, G., Cassin, E., Rousselot, G., Moing, A., Deborde, C. (2022). Development, Validation, and Use of 1H-NMR Spectroscopy for Evaluating the Quality of Acerola-Based Food Supplements and Quantifying Ascorbic Acid. Molecules, 27(17), 5614. DOI : 10.3390/molecules27175614
Campos, N. A., Colombié, S., Moing, A., Cassan, C., Amah, D., Swennen, R., Gibon, Y., Carpentier, S. C. (2022). From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown. Journal of experimental botany, 73 (14), 4832-4849. DOI : 10.1093/jxb/erac187
Dussarrat, T., Prigent, S., Latorre, C., Bernillon, S., Flandin, A., Díaz, F., Cassan, C., Van Delft, P., Jacob, D., Varala, K., Joubès, J., Gibon, Y., Rolin, D., Gutiérrez, R., Pétriacq, P. (2022). Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience. New Phytologist, 234, 1614-1628. DOI : 10.1111/nph.18095
Hall, R. D., D’Auria, J. C., Silva Ferreira, A. C., Gibon, Y., Kruszka, D., Mishra, P., van de Zedde, R. (2022). High-throughput plant phenotyping: a role for metabolomics? Trends in Plant Science, 27 (6), 549-563. DOI : 10.1016/j.tplants.2022.02.001
Loupit, G., Fonayet, J. V., Prigent, S., Prodhomme, D., Spilmont, A. S., Hilbert, G., Franc, C., De Revel, G., Richard, T., Ollat, N., Cookson, S. J. (2022). Identifying early metabolite markers of successful graft union formation in grapevine. Horticulture research, 9, uhab070. Advance online publication. DOI : 10.1093/hr/uhab070
Mazorra Morales, L. M., Cosme Silva, G. M., Santana, D. B., Pireda, S., Dorighetto Cogo, A. J., Heringer, Â. S., de Oliveira, T. d. R., Reis, R., dos Santos Prado, L. A., de Oliveira, A. V., Silveira, V., da Cunha, M., Barros, C., Façanha, A., Baldet, P., Bartoli, C., da Silva, M. G., Oliveira, J. (2022). Mitochondrial dysfunction associated with ascorbate synthesis in plants. Plant Physiology and Biochemistry, 185, 55-68. DOI : 10.1016/j.plaphy.2022.05.025
Nägele, T., Gibon, Y., Le Hir, R. (2022). Plant sugar metabolism, transport and signalling in challenging environments. Physiologia Plantarum, 174(5). DOI : 10.1111/ppl.13768
Parrilla, J., Medici, A., Gaillard, C., Verbeke, J., Gibon, Y., Rolin, D., Laloi, M., Finkelstein, R. R., Atanassova, R. (2022). Grape ASR Regulates Glucose Transport, Metabolism and Signaling. International journal of molecular sciences, 23(11), 6194. DOI : 10.3390/ijms23116194
Paulhe, N., Canlet, C., Damont, A., Peyriga, L., Durand, S., Deborde, C., Alves, S., Bernillon, S., Berton, T., Bir, R., Bouville, A., Cahoreau, E., Centeno, D., Costantino, R., Debrauwer, L., Delabrière, A., Duperier, C., Emery, S., Flandin, A., Hohenester, U., Jacob, D., Joly, C., Jousse, C., Lagree, M., Lamari, N., Lefebvre, M., Lopez-Piffet, C., Lyan, B., Maucourt, M., Migne, C., Olivier, M.F., Rathahao-Paris, E., Petriacq, P., Pinelli, J., Roch, L., Roger, P., Roques, S., Tabet, J.C., Tremblay-Franco, M., Traïkia, M., Warnet, A., Zhendre, V., Rolin, D., Jourdan, F., Thévenot, E., Moing, A., Jamin, E., Fenaille, F., Junot, C., Pujos-Guillot E, Giacomoni, F. (2022). PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management. Metabolomics, 18(6), 40. DOI : 10.1007/s11306-022-01899-3
Poorter, H., Yin, X., Alyami, N., Gibon, Y., Pons, T.L. (2022). MetaPhenomics: quantifying the many ways plants respond to their abiotic environment, using light intensity as an example. Plant and Soil, 476,421-424. DOI : 10.1007/s11104-022-05391-8
Poucet, T., Beauvoit, B., González-Moro, M. B., Cabasson, C., Pétriacq, P., Flandin, A., Gibon, Y., Marino, D., Dieuaide-Noubhani, M. (2022). Impaired cell growth in ammonium stress explained by modelling the energy cost of vacuole expansion in tomato leaves. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.15991
Roques, S., Deborde, C., Skiba-Cassy, S., Cala, O., Marchand, Y., Moing, A., Fauconneau, B. (2022). Critical assessment of metabolism and related growth and quality traits in trout fed spirulina-supplemented plant-based diets. Aquaculture, 553, 738033. DOI : 10.1016/j.aquaculture.2022.738033
Steelheart, C., Alegre, M., Baldet, P., Rothan, C., Bres, C., Just, D., Okabe, Y., Ezura, H., Ganganelli, I., Gergoff Grozeff, G., Bartoli, C. (2022). High light stress induces H2O2 production and accelerates fruit ripening in tomato. Plant Science, 322, 111348. DOI : 10.1016/j.plantsci.2022.111348
Vaitkevičiūtė, G., Aleliūnas, A., Gibon, Y., Armonienė, R. (2022). The effect of cold acclimation, deacclimation and reacclimation on metabolite profiles and freezing tolerance in winter wheat. Frontiers in Plant Science, 13, 959118. DOI :10.3389/fpls.2022.959118
Vaitkevičiūtė, G., Aleliūnas, A., Gibon, Y., Armonienė, R. (2022). Comparative Analysis of Antioxidant Accumulation under Cold Acclimation, Deacclimation and Reacclimation in Winter Wheat. Plants (Basel, Switzerland), 11(21), 2818. DOI : 10.3390/plants11212818
2021
Allwood, J.W., Gibon, Y., Osorio, S., Araújo, W., Vallarino, J., Pétriacq, P., Moing, A. (2021). Developmental metabolomics to decipher and improve fleshy fruit quality. In P. Pétriacq, & A. Bouchereau (Eds.), Plant Metabolomics in full swing, (Ed.) Elsevier, Advances in Botanical Research , Vol. 98., 1-33. DOI : 10.1016/bs.abr.2020.09.016
Allwood, J. W., Williams, A., Uthe, H., van Dam, N., M, Mur, L., A J, Grant, M., R, Pétriacq, P. (2021). Unravelling Plant Responses to Stress—The Importance of Targeted and Untargeted Metabolomics. Metabolites, 11(8), 558. DOI : 10.3390/metabo11080558
Ancín, M., Larraya, L., Florez-Sarasa, I., Bénard, C., Fernández-San Millán, A., Veramendi, J., Gibon, Y., Fernie, A. R., Aranjuelo, I., Farran, I. (2021). Thioredoxin m overexpression in chloroplasts alters carbon and nitrogen partitioning in tobacco plants. Journal of experimental botany, 72 (13), 4949-4964. DOI : 10.1093/jxb/erab193
Berton, T., Bernillon, S., Fernandez, O., Duruflé, H., S, Flandin, A., Cassan, C., Jacob, D., Langlade, N., B, Gibon, Y., Moing, A. (2021). Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit. OCL Oilseeds and fats crops and lipids, 28, 6 p. DOI : 10.1051/ocl/2021029
Bortolami, G., Gambetta, G., Cassan, C., Dayer, S., Farolfi, E., Ferrer, N., Gibon, Y., Jolivet, J., Lecomte, P., Delmas, C. E. L. (2021). Grapevines under drought do not express esca leaf symptoms. Proceedings of the National Academy of Sciences of the United States of America, 118(43), e2112825118. DOI : 10.1073/pnas.2112825118
Burgos, E., De Luca, M. B., Diouf, I., de Haro, L. A., Albert, E., Sauvage, C., Jian Tao, Z., Bermudez, L., Asís, R., Nunes Nesi, A., Matringe, M., Brehelin, C., Guiraud, T., Ferrand, C., Atienza, I., Jorly, J., Mauxion, J. P., Baldet, P., Fernie, A.R., Quadrana, L., Rothan, C., Causse, M., Carrari, F. (2021). Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato. The Plant journal 105(4), 907-923. DOI : 10.1111/tpj.15077
Castillo-Fraire, C., Mariana, Pottier, S., Bondon, A., Salas, E., Bernillon, S., Guyot, S., Poupard, P. (2022). NMR structural elucidation of dehydrodimers resulting from oxidation of 5-O-caffeoylquinic acid in an apple juice model solution. Food Chemistry, Online first 2021, 372, 131117. DOI : 10.1016/j.foodchem.2021.131117
Chen, J., Beauvoit, B., Génard, M., Colombié, S., Moing, A., Vercambre, G., Gomès, E., Gibon, Y., Dai, Z. (2021, 2021). Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development. New Phytologist, 230, 1489-1502. DOI : 10.1111/nph.17260
Covarrubias, M. P., Lillo-Carmona, V., Melet, L., Benedetto, G., Andrade, D., Maucourt, M., Deborde, C., Fuentealba, C., Moing, A., Valenzuela, M. L., Pedreschi, R., Almeida Miyasaka, A. (2021). Metabolite Fruit Profile Is Altered in Response to Source–Sink Imbalance and Can Be Used as an Early Predictor of Fruit Quality in Nectarine. Frontiers in Plant Science, 11: 604133. DOI: 10.3389/fpls.2020.604133
Deborde, C., Hounoum, B., Moing, A., Maucourt, M., Jacob, D., Corraze, G., Médale, F., Fauconneau, B. (2021). Putative imbalanced amino acid metabolism in rainbow trout long term fed a plant-based diet as revealed by 1H-NMR metabolomics. Journal of Nutritional Science, 10, E13. DOI : 10.1017/jns.2021.3
Deslous, P., Bournonville, C., Decros, G., Okabe, Y., Mauxion, J. P., Jorly, J., Gadin, S., Brès, C., Mori, K., Ferrand, C., Prigent, S., Ariizumi, T., Ezura, H., Hernould, M., Rothan, C., Pétriacq, P., Gibon, Y., Baldet, P. (2021). Overproduction of ascorbic acid impairs pollen fertility in tomato. Journal of experimental botany, erab040. DOI :10.1093/jxb/erab040
Destailleur, A., Poucet, T., Cabasson, C., Alonso, A. P., Cocuron, J.-C., Larbat, R., Vercambre, G., Colombié, S., Pétriacq, P., Andrieu, M. H., Beauvoit, B., Gibon, Y., Dieuaide-Noubhani, M. (2021). The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole. Metabolites, 11(12), 848. DOI : 10.3390/metabo11120848
Dussarrat, T., Decros, G., P, F., Gibon, Y., Latorre, C., Rolin, D., Gutierrez, R. A., Pétriacq, P. (2021). Another Tale from the Harsh World: How Plants Adapt to Extreme Environments. Annual Plant Reviews Online, 4(2), 551-603. DOI : 10.1002/9781119312994.apr0758
Fernandez, O., Millet, E., Rincent, R., Prigent, S., Pétriacq, P., Gibon, Y. (2021). Plant metabolomics and breeding. In P. Pétriacq, & A. Bouchereau (Eds.), Plant Metabolomics in full swing, (Ed.) Elsevier, Advances in Botanical Research, 98, 207-235. DOI : 10.1016/bs.abr.2020.09.020
Gerlin, L., Escourrou, A., Cassan, C., Maviane Macia, F., Peeters, N., Genin, S., Baroukh, C. (2021). Unravelling physiological signatures of tomato bacterial wilt and xylem metabolites exploited by Ralstonia solanacearum. Environmental microbiology, 23(10), 5962-5978. DOI : 10.1111/1462-2920.15535
Gerlin, L., Frainay, C., Jourdan, F., Baroukh, C., Prigent, S. (2021). Plant genome-scale metabolic networks. In P. Pétriacq, & A. Bouchereau (Eds.), Plant Metabolomics in full swing, (Ed.) Elsevier, Advances in Botanical Research, 98, 237-270. DOI : 10.1016/bs.abr.2020.09.021
Ishikawa, Y., Cassan, C., Kadeer, A., Yuasa, K., Sato, N., Sonoike, K., Kaneko, Y., Miyagi, A., Takahashi, H., Ishikawa, T., Yamaguchi, M., Nishiyama, Y., Hihara, Y., Gibon, Y., Kawai-Yamada, M. (2021). The NAD kinase Slr0400 functions as a growth repressor in Synechocystis sp. PCC 6803. Plant & Cell Physiology, pcab023. DOI : 10.1093/pcp/pcab023
Lacrampe, N., Lopez-Lauri, F., Lugan, R., Colombié, S., Olivares, J., Nicot, P., Lecompte, F. (2021). Regulation of sugar metabolism genes in the N-dependent susceptibility of tomato stems to Botrytis cinerea. Annals of Botany, 127 (1), 143-154. DOI : 10.1093/aob/mcaa155
Le Bihan, Z., Hastoy, C., Cosson, P., Boutié, P., Rolin, D., Schurdi-Levraud, V. (2021). To cut or not to cut? That is the question in first year harvest of Stevia rebaudiana Bertoni production. Industrial Crops and Products, 162, 113209. DOI : 10.1016/j.indcrop.2020.113209
Mori, K., Lemaire-Chamley, M., Jorly, J., Carrari, F., Conte, M., Asamizu, E., Mizoguchi, T., Ezura, H., Rothan, C. (2021). The conserved brassinosteroid-related transcription factor BIM1a negatively regulates fruit growth in tomato. Journal of Experimental Botany, 72(4), 1181-1197. DOI : 10.1093/jxb/eraa495
Pagés, G., Deborde, C., Lemaire-Chamley, M., Moing, A., Bonny, J. M. (2021). MRSI vs CEST MRI to understand tomato metabolism in ripening fruit: is there a better contrast?. Analytical and bioanalytical chemistry, 413, 1251-1257. DOI : 10.1007/s00216-020-03101-w
Poucet, T., González-Moro, M. B., Cabasson, C., Beauvoit, B., Gibon, Y., Dieuaide-Noubhani, M., Marino, D. (2021). Ammonium supply induces differential metabolic adaptative responses in tomato according to leaf phenological stage. Journal of Experimental Botany, 72(8), 3185-3199. DOI : 10.1093/jxb/erab057
Rolin, D., Bennetau-Pelissero, C., Tetali, S., Pétriacq, P. (2021). When dietary supplements meet metabolomics: A fast-evolving field—A follow-up of ABR volume 67: Metabolomics coming of age with its technological diversity. In Past, Current and Future Topics, Advances in Botanical Research (Elsevier), 100, 329-354. DOI : 10.1016/bs.abr.2021.01.009
Stuani, L., Sabatier, M., Saland, E., Cognet, G., Poupin, N., Bosc, C., Castelli, F., Gales, L., Turtoi, E., Montersino, C., Farge, T., Boet, E., Broin, N., Larrue, C., Baran, N., Cissé, M., Conti, M., Loric, S., Kaoma, T., Hucteau, A., Zavoriti, A., Sahal, A., Mouchel, P.-L., Gotanègre, M., Cassan, C., Fernando, L., Wang, F., Hosseini, M., Chu-Van, E., Le Cam, L., Carroll, M., Selak, M., Vey, N., Castellano, R., Fenaille, F., Turtoi, A., Cazals, G., Bories, P., Gibon, Y., Nicolay, B., Ronseaux, S., Marszalek, J., Takahashi, K., DiNardo, C., Konopleva, M., Pancaldi, V., Collette, Y., Bellvert, F., Jourdan, F., Linares, L., Récher, C., Portais, J.-C., Sarry, J.-E. (2021). Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia. Journal of Experimental Medicine, 218(5). DOI : 10.1084/jem.20200924
Urrutia, M., Blein-Nicolas, M., Prigent, S., Bernillon, S., Deborde, C., Balliau, T., Maucourt, M., Jacob, D., Ballias, P., Bénard, C., Sellier, H., Gibon, Y., Giauffret, C., Zivy, M., Moing, A. (2021). Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis. Plant, Cell and Environment, 44(5), 1504-1521. DOI : 10.1111/pce.13993
Williams, A., Gamir, J., Gravot, A., Pétriacq, P. (2021). Untangling plant immune responses through metabolomics. In P. Pétriacq, & A. Bouchereau (Eds.), Plant Metabolomics in full swing, (Ed.) Elsevier, Advances in Botanical Research, 98, 73-105. DOI : 10.1016/bs.abr.2020.09.017
2020
Belouah, I., Benard, C., Denton, A., Blein-Nicolas, M., Balliau, T., Teyssier, E., Gallusci, P., Bouchez, O., Usadel, B., Zivy, M., Gibon, Y., Colombie, S. (2020). Transcriptomic and proteomic data in developing tomato fruit. Data in Brief, 28, 105015. DOI : 10.1016/j.dib.2019.105015
Berger, A., Boscari, A., Horta Araújo, N., Maucourt, M., Hanchi, M., Bernillon, S., Rolin, D., Puppo, A., Brouquisse, R. (2020). Plant Nitrate Reductases Regulate Nitric Oxide Production and Nitrogen-Fixing Metabolism During the Medicago truncatula-Sinorhizobium meliloti Symbiosis. Frontiers in plant science, 11, 1313. DOI : 10.3389/fpls.2020.01313
Bonnot, T., Martre, P., Hatte, V., Dardevet, M., Leroy, P., Bénard, C., Falagan, N., Martin-Magniette, M.L., Deborde, C., Moing, A., Gibon, Y., Pailloux, M., Bancel, E., Ravel, C. 2020). Einkorn Grain Responses to S and N Supply. Plant Physiology Apr 2020, DOI: 10.1104/pp.19.00842
Burgos, E., De Luca, M. B., Diouf, I., de Haro, L. A., Albert, E., Sauvage, C., Jian Tao, Z., Bermudez, L., Asís, R., Nunes Nesi, A., Matringe, M., Brehelin, C., Guiraud, T., Ferrand, C., Atienza, I., Jorly, J., Mauxion, J. P., Baldet, P., Fernie, A. R., Quadrana, L., Carrari, F. (2020). Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato. The Plant journal : for cell and molecular biology, Advance online publication. DOI : 10.1111/tpj.15077
Cakpo, C.B., Vercambre, G., Baldazzi, V., Roch, L., Dai, Z., Valsesia, P., Memah, M.M., Colombié, S., Moing, A., Gibon, Y., Genard, M. (2020). Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species. Annals of Botany. Doi: 10.1093/aob/mcaa082
Chen, J., Beauvoit, B., Colombié, S., Roch, L., Capko, C. B., Vercambre, G., Génard, M., Andrieu, M. H., Jacob, D., Girollet, N., Moing, A., Gomès, E., Gibon, Y., Dai, Z. (2020). An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism. Acta Horticulturae, 1296, 401-410. DOI :10.17660/ActaHortic.2020.1296.52.
Dey, A., Charrier, B., Martineau, E., Deborde, C., Gandriau, E., Moing, A., Jacob, D., Eshchenko, D., Schnell, M., Melzi, R., Kurzbach, D., Ceillier, M., Chappuis, Q., Cousin, S. F., Kempf, J. G., Jannin, S., Dumez, J. N., Giraudeau, P. (2020). Hyperpolarized NMR Metabolomics at Natural 13C Abundance. Analytical chemistry, 92(22), 14867–14871. DOI : 10.1021/acs.analchem.0c03510
Duran Garzon, C., Lequart, M., Rautengarten, C., Bassard, S., Sellier-Richard, H., Baldet, P., Heazlewood, JL., Gibon, Y., Domon, JM., Giauffret, C., Rayon, C. (2020). Regulation of carbon metabolism in two maize sister lines contrasted for chilling tolerance. Journal of experimental botany, 71 (1), 356–369. DOI : 10.1093/jxb/erz421
Fernie, A., Hashida, S.-N., Yoshimura, K., Gakière, B., Mou, Z., Petriacq, P. (2020). Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science, 11, 146. DOI : 10.3389/fpls.2020.00146
Jacob, D., David, R., Aubin, S., Gibon, Y. (2020). Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience, 9 (12), giaa144. DOI: 10.1093/gigascience/giaa144
Loupit, G., Prigent, S., Franc, C., de Revel, G., Richard, T. et al.. (2020) Polyphenol Profiles of Just Pruned Grapevine Canes from Wild Vitis Accessions and Vitis vinifera Cultivars. Journal of Agricultural and Food Chemistry. DOI : 10.1021/acs.jafc.9b08099
Luna, E., Flandin, A., Cassan, C., Prigent, S., Chevanne, C., Kadiri, F., Gibon, Y., Petriacq, P. (2020). Metabolomics to Exploit the Primed Immune System of Tomato Fruit. Metabolites, 10 (3), 96. DOI : 10.3390/metabo10030096
Mageroy, M.H., Wilkinson, S.., Tengs, T., Cross, H., Almvik, M., Pétriacq, P., Vivian-Smith, A., Zhao, T., Fossdal, C.G., Krokene, P. (2020). Molecular underpinnings of methyl jasmonate-induced resistance in Norway spruce. Plant Cell Environ, 43 (8), 1827-1843. doi: 10.1111/pce.13774
Moing A., Allwood J.W., Aharoni A., Baker J.M., Beale M.H., Ben-Dor S., Biais B., Brigante F., Burger J., Deborde C., Erban A., Faigenboim A., Gur A., Goodacre R., Hansen T.H., Jacob D., Katzir N., Kopka J., Lewinshon E., Maucourt M., Meir S., Miller S., Mumm R., Oren E., Paris H.S., Rogachev I., Rolin D., Saar U., Schjoerring J.K., Tadmor Y., Tsuri G., De Vos R.C.H., Ward J.L., Yeselson E., Hall R.D. & Schaffer A.A. (2020) Comparative metabolomics and molecular phylogenetics of melon (Cucumis melo, Cucurbitaceae) biodiversity. Metabolites 10, 121. DOI : 10.3390/metabo10030121
Mori, K., Lemaire-Chamley, M., Jorly, J., Carrari, F., Conte, M., Asamizu, E., Mizoguchi, T., Ezura, H., Rothan, C. (2020). The conserved brassinosteroid-related transcription factor BIM1a negatively regulates fruit growth in tomato. Journal of experimental botany. Online first. DOI : 10.1093/jxb/eraa495
Musseau, C., Jorly, J., Gadin, S., Sørensen, I., Deborde, C., Bernillon, S., Mauxion, J.-P., Atienza, I., Moing, A., Lemaire-Chamley, M., Rose, J. K. C., Chevalier, C., Rothan, C., Fernandez-Lochu, L., Gévaudant, F. (2020). The Tomato Guanylate-Binding Protein SlGBP1 Enables Fruit Tissue Differentiation by Maintaining Endopolyploid Cells in a Non-proliferative State. The Plant cell, tpc.00245.02020. DOI : 10.1105/tpc.20.00245⟩.
Roch, L., Prigent, S., Klose, H., Cakpo, C.B., Beauvoit, B., Deborde, C., Fouillen, L., van Delft, P., Jacob, J. , Usadel, B., Dai, Z. , Génard, M., Vercambre, G., Colombié, S., Moing, A., Gibon, Y. (2020). Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species. Journal of Experimental Botany, eraa302. DOI : 10.1093/jxb/eraa302
Shinozaki, Y., Beauvoit, B.P., Takahara, M., Hao, S., Ezura, K., Andrieu, M.H., Nishida, K., Mori, K., Suzuki, Y., Kuhara, S., Enomoto, H., Kusano, M., Fukushima, A., Mori, T., Kojima, M., Kobayashi, M., Sakakibara, H., Saito, K., Ohtani, Y., Bénard, C., Prodhomme, D., Gibon, Y., Ezura, H., Ariizumi, T. (2020). Fruit setting rewires central metabolism via gibberellin cascades. Proceedings of the National Academy of Sciences, 117(38), 23970-23981. DOI: 10.1073/pnas.2011859117
Zhang, Y., Krahnert, I., Bolze, A., Gibon, Y., Fernie, A.R. (2020). Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants. Current Protocols in Plant Biology, 5(3) : e20115. DOI : 10.1002/cppb.20115
2019
Belouah, I., Nazaret, C., Pétriacq, P., Prigent, S., Bénard, C., Mengin, V., Blein-Nicolas, M., Denton, AK., Balliau, T., Augé, S., Bouchez, O., Mazat, JP., Stitt, M., Usadel, B., Zivy, M., Beauvoit, B., Gibon, Y., Colombié, S (2019). Modeling protein destiny in developing fruit. Plant physiology, 180, 1709-1724. DOI : 10.1104/pp.19.00086
Cotton, TEA., Pétriacq, P., Cameron, DD., Meselmani, MA., Schwarzenbacher, R., Rolfe, SA., Ton, J (2019). Metabolic regulation of the maize rhizobiome by benzoxazinoids. The ISME journal, 13, 1647–1658. DOI : 10.1038/s41396-019-0375-2
Coumoul, X., Servien, R., Juricek, L., Kaddouch-Amar, Y., Lippi, Y., Berthelot, L., Naylies, C., Morvan, ML., Antignac, JP., Desdoits-Lethimonier, C., Jegou, B., Tremblay-Franco, M., Canlet, C., Debrauwer, L., Le Gall, C., Laurent, J., Gouraud, PA., Cravedi, JP., Jeunesse, E., Savy, N., Dandere-Abdoulkarim, K., Arnich, N., Fourès, F., Cotton, J., Broudin, S., Corman, B., Moing, A., Laporte, B., Richard-Forget, F., Barouki, R., Rogowsky, P., Salles, B (2019). The GMO90+ Project: Absence of Evidence for Biologically Meaningful Effects of Genetically Modified Maize-based Diets on Wistar Rats After 6-Months Feeding Comparative Trial. Toxicological sciences : an official journal of the Society of Toxicology, 168 (2), 315-338. DOI : 10.1093/toxsci/kfy298
Deborde, C., Fontaine, J.-X., Jacob, D., Botana, A., Nicaise, V., Forget, F., Lecomte, S., Decourtil, Hamade, Mesnard, Moing, A., Molinié (2019). Optimizing 1D 1H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing. Metabolomics, 15 (3), 28., DOI : 10.1007/s11306-019-1488-3
Decros, G., Baldet, P., Beauvoit, B., Stevens, R., Flandin, A., Colombie, S., Gibon, Y., Petriacq, P. (2019). Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit. Frontiers in Plant Science, 10, 1-16. DOI : 10.3389/fpls.2019.01091
Decros, G., Beauvoit, B., Colombie, S., Cabasson, C., Bernillon, S., Arrivault, S., Guenther, M., Belouah, I., Prigent, S., Baldet, P., Gibon, Y., Petriacq, P. (2019). Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling. Frontiers in Plant Science, 10, 1201. DOI: 10.3389/fpls.2019.01201
Dell'Aglio, E., Giustini, C., Kraut, A., Coute, Y., Costa, A., Decros, G., Gibon, Y., Mazars, C., Matringe, M., Finazzi, G., Curien, G. (2019). Identification of the Arabidopsis calmodulin-dependent NAD+ kinase that sustains the elicitor-induced oxidative burst. Plant physiology, 181, 1449–1458. DOI : 10.1104/pp.19.00912
Fernandez, O., Urrutia, M., Berton, T., Bernillon, S., Deborde, C., Jacob, D., Maucourt, M., Maury, P., Duruflé, H., Gibon, Y., Langlade, N. B., Moing, A. (2019). Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers. Metabolomics, 15 (4), 56. DOI : 10.1007/s11306-019-1515-4
Lemaire-Chamley, M., Mounet, F., Deborde, C., Maucourt, M., Jacob, D., Moing, A. (2019). NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit. Metabolites, 9 (5). DOI : 10.3390/metabo9050093
Mori, K., Beauvoit, B., Biais, B., Chabane, M., Allwood, J. W., Deborde, C., Maucourt, M., Goodacre, R., Cabasson, C., Moing, A., Rolin, D., Gibon, Y. (2019). Central Metabolism Is Tuned to the Availability of Oxygen in Developing Melon Fruit. Frontiers in Plant Science, 10, 594. DOI : 10.3389/fpls.2019.00594
Nielsen, J. C., Prigent, S., Grijseels, S., Workman, M., Ji, B., Nielsen, J. (2019). Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi. mSystems, 4 (2), e00012-19. , DOI : 10.1128/mSystems.00012-19
Roch, L., Dai, Z., Gomes, E., Bernillon, S., Wang, J., Gibon, Y., Moing, A. (2019). Fruit Salad in the Lab: Comparing Botanical Species to Help Deciphering Fruit Primary Metabolism. Frontiers in Plant Science, 10, 836. , DOI : 10.3389/fpls.2019.00836
Tiukova, IA., Prigent, S., Nielsen, J., Sandgren, M., Kerkhoven, EJ (2019). Genome-scale model of Rhodotorula toruloides metabolism. Biotechnology and bioengineering, 116 (12), 3396-3408. , DOI : 10.1002/bit.27162
Van Oosten, M. J., Dell'Aversana, E., Ruggiero, A., Cirillo, V., Gibon, Y., Woodrow, P., Maggio, A., Carillo, P. (2019). Omeprazole Treatment Enhances Nitrogen Use Efficiency Through Increased Nitrogen Uptake and Assimilation in Corn. Frontiers in Plant Science, 10, 1507. DOI : 10.3389/fpls.2019.01507
Williams, A., Cotton, A., Ton, Petriacq, P. (2019). An Adjustable Protocol to Analyze Chemical Profiles of Non-sterile Rhizosphere Soil. Bio-Protocol, 9 (10), e3245. DOI : 10.21769/BioProtoc.3245
2018
Atanasova-Penichon, V., Legoahec, L., Bernillon, S., Deborde, C., Maucourt, M., Verdal-Bonnin, M.-N., Pinson-Gadais, L., Ponts, N., Moing, A., Richard-Forget, F. (2018). Mycotoxin biosynthesis and central metabolism are two interlinked pathways in Fusarium graminearum, as demonstrated by the extensive metabolic changes induced by caffeic acid exposure. Applied and Environmental Microbiology, 84 (8), e01705-17. DOI : 10.1128/AEM.01705-17
Beauvoit, B., Belouah, I., Bertin, N., Cakpo, CB., Colombié, S., Dai, Z., Gautier, H., Génard, M., Moing, A., Roch, L., Vercambre, G., Gibon, Y (2018). Putting primary metabolism into perspective to obtain better fruits. Annals of botany. , DOI : 10.1093/aob/mcy057
Belouah, I., Blein-Nicolas, M., Balliau, T., Gibon, Y., Zivy, M., Colombié, S (2018). Peptide filtering differently affects the performances of XIC-based quantification methods. Journal of proteomics. , DOI : 10.1016/j.jprot.2018.10.003
Bénard, C., Acket, S., Rossez, Y., Fernandez, O., Berton, T., Gibon, Y., Cabasson, C (2018). Untargeted Analysis of Semipolar Compounds by LC-MS and Targeted Analysis of Fatty Acids by GC-MS/GC-FID: From Plant Cultivation to Extract Preparation. Methods in molecular biology (Clifton, N.J.), 1778, 101-124. DOI : 10.1007/978-1-4939-7819-9_8
Bernillon, S., Maucourt, Deborde, Chéreau, Jacob, Priymenko, Laporte, Coumoul, Salles, Rogowsky, Richard-Forget, Moing (2018). Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding. Metabolomics, 14 (3). , DOI : 10.1007/s11306-018-1329-9
Cañas, RA., Yesbergenova-Cuny, Z., Simons, M., Chardon, F., Armengaud, P., Quilleré, I., Cukier, C., Gibon, Y., Limami, AM., Nicolas, SD., Brulé, L., Lea, PJ., Maranas, CD., Hirel, B (2018). CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield. The Plant cell. , DOI : 10.1105/tpc.18.00273
Chéreau, S., Rogowsky, P., Laporte, B., Coumoul, X., Moing, A., Priymenko, N., Steinberg, P., Wilhelm, R., Schiemann, J., Salles, B., Richard-Forget, F. (2018). Rat feeding trials: A comprehensive assessment of contaminants in both genetically modified maize and resulting pellets. Food and Chemical Toxicology, 121, 573-582. , DOI : 10.1016/j.fct.2018.09.049
Gatesoupe, F.-J., Fauconneau, B., Deborde, C., Madji Hounoum, B., Jacob, D., Moing, A., Corraze, G., Médale, F. (2018). Intestinal microbiota in rainbow trout, Oncorhynchus mykiss , fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites. Aquaculture Nutrition. , DOI : 10.1111/anu.12793
Jurkiewicz, P., Melser, S., Maucourt, M., Ayeb, H., Veljanovski, V., Maneta-Peyret, L., Hooks, M., Rolin, D., Moreau, P., Batoko, H. (2018). The multistress-induced Translocator protein (TSPO) differentially modulates storage lipids metabolism in seeds and seedlings. Plant Journal, Online first. , DOI : 10.1111/tpj.14028
Lamari, N., Zhendre, V., Urrutia, M., Bernillon, S., Maucourt, M., Deborde, C., Prodhomme, D., Jacob, D., Ballias, P., Rolin, D., Sellier, H., Rabier, D., Gibon, Y., Giauffret, C., Moing, A. (2018). Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding. Metabolomics, 14 (10), 132. , DOI : 10.1007/s11306-018-1427-8
Mortain-Bertrand, A., Stammitti, L., Telef, N., Colardelle, P., Brouquisse, R., Rolin, D., Gallusci, P. (2018). Corrigendum. Physiologia Plantarum, 162 (4), 518-520. DOI : 10.1111/ppl.12706
Parrilla, J., Gaillard, C., Verbeke, J., Maucourt, M., Aleksandrov, RA., Thibault, F., Fleurat-Lessard, P., Gibon, Y., Rolin, D., Atanassova, R. (2018). Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells. FEBS Open Bio, 8 (5), 784-798. DOI : 10.1002/2211-5463.12415
Peltier, E., Bernard, M., Trujillo, M., Prodhomme, D., Barbe, JC., Gibon, Y., Marullo, P (2018). Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions. PloS one, 13 (1), e0190094. , DOI : 10.1371/journal.pone.0190094
Petriacq, P., López, A., Luna, E. (2018). Fruit Decay to Diseases: Can Induced Resistance and Priming Help?. Plants, 7 (4), 77. , DOI : 10.3390/plants7040077
Rached, M., Baldet, P., Gibon, Y., Matsukura, C., Ariizumi, T., Ezura, Fukuda (2018). Differences in Blossom-end Rot Resistance in Tomato Cultivars is Associated with Total Ascorbate rather than Calcium Concentration in the Distal End Part of Fruits per se. The Horticulture Journal, 87 (3), 372-381. , DOI : 10.2503/hortj.OKD-150
Roques, S., Deborde, C., Richard, N., Sergent, L., Kurz, F., Skiba-Cassy, S., Fauconneau, B., Moing, A. (2018). Characterizing alternative feeds for rainbow trout (O. mykiss) by 1H NMR metabolomics. Metabolomics, 14 (12), 155. , DOI : 10.1007/s11306-018-1454-5
Roques, S., Deborde, C., Richard, N., Skiba-Cassy, S., Moing, A., Fauconneau, B. (2018). Metabolomics and fish nutrition: a review in the context of sustainable feed development. Reviews in Aquaculture, 1-22. , DOI : 10.1111/raq.12316
Schober, D., Jacob, D., Wilson, M., Cruz, JA., Marcu, A., Grant, JR., Moing, A., Deborde, C., de Figueiredo, L. F., Haug, K., Rocca-Serra, P., Easton, J. M., Ebbels, T. M. D., Hao, J., Ludwig, C., Günther, U. L., Rosato, A., Klein, M. S., Lewis, I., Luchinat, C., Jones, A. R., Grauslys, A., Larralde, M., Yokochi, M., Kobayashi, N., Porzel, A., Griffin, J., Viant, M. R., Wishart, DS., Steinbeck, C., Salek, RM., Neumann, S (2018). nmrML: a community supported open data standard for the description, storage, and exchange of NMR data. Analytical Chemistry, 90 (1), 649-656. , DOI : 10.1021/acs.analchem.7b02795
Shinozaki, Y., Ezura, K., Hu, J., Okabe, Y., Benard, C., Prodhomme, D., Gibon, Y., Sun, TP., Ezura, H., Ariizumi, T (2018). Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato. Scientific Reports, 8 (1), 12043. , DOI : 10.1038/s41598-018-30502-w
Soubeyrand, E., Colombié, S., Beauvoit, B., Dai, Z., Cluzet, S., Hilbert, G., Renaud, C., Maneta-Peyret, L., Dieuaide-Noubhani, M., Mérillon, Gibon, Y., Delrot, S., Gomès, E. (2018). Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation. Frontiers in Plant Science, 9, 1-14. , DOI : 10.3389/fpls.2018.00421
Stevens, R., Baldet, P., Bouchet, J.-P., Causse, M., Deborde, C., DESCHODT, C., Faurobert, M., Garchery, C., Garcia, V., Gautier, H., Gouble, B., Maucourt, M., Moing, A., Page, D., Petit, J., Poëssel, J.-L., Truffault, V., Rothan, C. (2018). A systems biology study in tomato fruit reveals correlations between the ascorbate pool and genes involved in ribosome biogenesis, translation, and the heat-shock response. Frontiers in Plant Science, 9 (137), 16 p. 10.3389/fpls.2018.00137
Wedeking, R., Maucourt, M., Deborde, C., Moing, A., Gibon, Y., Goldbach, HE., Wimmer, MA (2018). 1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets. Plos One, 13 (5), e0196102. DOI : 10.1371/journal.pone.0196102
Williams, A., Petriacq, P., Beerling, D. J., Cotton, T. E. A., Ton, J (2018). Impacts of Atmospheric CO2 and Soil Nutritional Value on Plant Responses to Rhizosphere Colonization by Soil Bacteria. Frontiers in Plant Science, 9, 1493. , DOI : 10.3389/fpls.2018.01493
Xia, Q., Maharajah, P., Cueff, G., Rajjou, L., Prodhomme, D., Gibon, Y., Bailly, C., Corbineau, F., Meimoun, P., El-Maarouf-Bouteau, H (2018). Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination. Plant science : an international journal of experimental plant biology, 269, 118-125. , DOI : 10.1016/j.plantsci.2018.01.014
2017
Argyris, J. M., Díaz, A., Ruggieri, V., Fernández, M., Jahrmann, T., Gibon, Y., Picó, B., Martín-Hernández, AM., Monforte, A. J., Garcia-Mas, J (2017). QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.). Frontiers in Plant Science, 8, 1679. DOI : 10.3389/fpls.2017.01679
Cañas, RA., Yesbergenova-Cuny, Z., Simons, M., Chardon, F., Armengaud, P., Quilleré, I., Cukier, C., Gibon, Y., Limami, AM., Nicolas, S., Brulé, L., Lea, PJ., Maranas, CD., Hirel, B (2017). Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. The Plant cell, 29 (5), 919-943. DOI : 10.1105/tpc.16.00613
Colombié, S., Beauvoit, B., Nazaret, C., Bénard, C., Vercambre, G., Le Gall, S., Biais, B., Cabasson, C., Maucourt, M., Bernillon, S., Moing, A., Dieuaide-Noubhani, M., Mazat, JP., Gibon, Y (2017). Respiration climacteric in tomato fruits elucidated by constraint-based modelling. The New phytologist, 213 (4), 1726-1739. DOI : 10.1111/nph.14301
Deborde, C., Moing, A., Roch, L., Jacob, D., Rolin, D., Giraudeau, P. (2017). Plant metabolism as studied by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy, 102-103, 61-97. DOI : 10.1016/j.pnmrs.2017.05.001
Gimeno, T. E., Ogée, J., Royles, J., Gibon, Y., West, J. B., Burlett, R., Jones, S. P., Sauze, J., Wohl, S., Benard, C., Genty, B., Wingate, L. (2017). Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light. The New phytologist, 215 (3), 965-976. DOI : 10.1111/nph.14584
Jacob, D., Deborde, C., Lefebvre, M., Maucourt, M., Moing, A. (2017). NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics, 13 (4), 36. DOI : 10.1007/s11306-017-1178-y
Huang, H., Nguyen Thi Thu, T., He, X., Gravot, A., Bernillon, S., Ballini, E., Morel, J.-B. (2017). Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast. Frontiers in Plant Science, 8, 265. DOI : 10.3389/fpls.2017.00265
Luchaire, N., Rienth, M., Romieu, C., Nehe, A., Chatbanyong, R., Houel, C., Ageorges, A., Gibon, Y., Turc, O., Muller, B., Torregrosa, L., Pellegrino, A. (2017). Microvine: A New Model to Study Grapevine Growth and Developmental Patterns and their Responses to Elevated Temperature. American Journal of Enology and Viticulture, ajev.2017.16066. DOI : 10.5344/ajev.2017.16066
Martineau, E., Domec, J.-C., Bosc, A., Dannoura, M., Gibon, Y., Benard, C., Jordan-Meille, L. (2017). The role of potassium on maize leaf carbon exportation under drought condition. Acta Physiologiae Plantarum, 39 (10), 219. DOI : 10.1007/s11738-017-2515-5
Musseau, C., Just, D., Jorly, J., Gevaudant, F., Moing, A., Chevalier, C., Lemaire-Chamley, M., Rothan, C., Fernandez, L. (2017). Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. Frontiers in Plant Science, 8. DOI : 10.3389/fpls.2017.00988
Omena-Garcia, R. P., Araújo, WL., Gibon, Y., Fernie, A. R., Nunes-Nesi, A (2017). Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants. Methods in Molecular Biology, 1670, 167-182. DOI : 10.1007/978-1-4939-7292-0_14
Perrin, F., Dubois-Laurent, C., Gibon, Y., Citerne, S., Huet, S., Suel, A., Le Clerc, V., Briard, Hamama, Peltier, Gagné, Geoffriau (2017). Combined Alternaria dauci infection and water stresses impact carotenoid content of carrot leaves and roots. Environmental and Experimental Botany, 143, 125-134. DOI : 10.1016/j.envexpbot.2017.09.004
Salon, C., Avice, JC., Colombie, S., Dieuaide-Noubhani, M., Gallardo, K., Jeudy, C., Ourry, A., Prudent, M., Voisin, AS., Rolin, D (2017). Fluxomics links cellular functional analyses to whole-plant phenotyping. Journal of experimental botany, 68 (9), 2083-2098. DOI : 10.1093/jxb/erx126
2016
Antoine, S., Pailly, O., Gibon, Y., Luro, F., Santini, J., Giannettini, J., Berti, L. (2016). Short and long term effects of carbohydrate limitation on sugar and organic acid accumulation during mandarin fruit growth. Journal of the science of food and agriculture, 96 (11), 3906-3914. DOI : 10.1002/jsfa.7594
Antoine S, Pailly O, Santini J, Giannettini J, Gibon Y, Luro F & Berti L (2016) Contrasted responses to carbohydrate limitation in mandarin fruit during development. Journal of the Science of Food and Agriculture, in press.
Benard, C., Gibon, Y. (2016). Measurement of Enzyme Activities and Optimization of Continuous and Discontinuous Assays. In: Current Protocols in Plant Biology (p. 247-262). New-York, USA : John Wiley and Sons Inc. DOI : 10.1002/cppb.20003
Berthelot, K., Estevez, Y., Quiliano, M., Baldera-Aguayo, P. A., Zimic, M., Pribat, A., Bakleh, M.-E., Teyssier, E., Gallusci, P., Gardrat, C., Lecomte, S., Peruch, F. (2016). HbIDI, SlIDI and EcIDI: A comparative study of isopentenyl diphosphate isomerase activity and structure. Biochimie, 127, 133-43. DOI : 10.1016/j.biochi.2016.05.005
Bonnot, C., Pinson, B., Clément, M., Bernillon, S., Chiarenza, S., Kanno, S., Kobayashi, N., Delannoy, E., Nakanishi, T. M., Nussaume, L., Desnos, T. (2016). . A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytologist, 209 (1), 161-176. DOI : 10.1111/nph.13591
Bornet, A., Maucourt, M., Deborde, C., Jacob, D., Milani, J., Vuichoud, B., Ji, X., Dumez, J.-N., Moing, A., Bodenhausen, G., Jannin, S., Giraudeau, P. (2016). Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics. Analytical chemistry, 88 (12), 6179-83. DOI : 10.1021/acs.analchem.6b01094
Botton, A., Rasori, A., Ziliotto, F., Moing, A., Maucourt, M., Bernillon, S., Deborde, C., Petterle, A., Varotto, S., Bonghi, C. (2016). . The peach HECATE3-like gene FLESHY plays a double role during fruit development. Plant Molecular Biology, 91 (1-2), 97-114. DOI : 10.1007/s11103-016-0445-z
Chaher, N., Krisa, S., Delaunay, J.-C., Bernillon, S., Pedrot, E., Mérillon, J.-M., Atmani, D., Richard, T. (2016). Unusual compounds from Galium mollugo and their inhibitory activities against ROS generation in human fibroblasts. Journal of pharmaceutical and biomedical analysis, 117, 79-84. DOI : 10.1016/j.jpba.2015.07.027
Colombié, S., Beauvoit, B., Nazaret, C., Bénard, C., Vercambre, G., Le Gall, S., Biais, B., Cabasson, C., Maucourt, M., Bernillon, S., Moing, A., Dieuaide-Noubhani, M., Mazat, JP., Gibon, Y (2016). Respiration climacteric in tomato fruits elucidated by constraint-based modelling. The New phytologist, Early view. DOI : 10.1111/nph.14301
Fernandez, O., Urrutia, M., Bernillon, S., Giauffret, C., Tardieu, F., Le Gouis, J., Langlade, N., Charcosset, A., Moing, A., Gibon, Y. (2016). Fortune telling: metabolic markers of plant performance. Metabolomics, 12 (10), 14 p. DOI : 10.1007/s11306-016-1099-1
Oury, V., Caldeira, C. F., Prodhomme, D., Pichon, J.-P., Gibon, Y., Tardieu, F., Turc, O. (2016). Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering?. Plant Physiology, 71 (2), 997-1008. DOI : 10.1104/pp.15.01130
Perpiñá, G., Esteras, C., Gibon, Y., Monforte, A. J., Picó, B (2016). A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits. BMC plant biology, 16 (1), 154. DOI : 10.1186/s12870-016-0842-0
Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V. (2016). Bread wheat (Triticum aestivum L.) grain protein concentration is related to early post-flowering nitrate uptake under putative control of plant satiety level. Plos One, 11 (2). DOI : 10.1371/journal.pone.0149668
Toubiana, D., Xue, W., Zhang, N., Kremling, K., Gur, A., Pilosof, S., Gibon, Y., Stitt, M., Buckler, E. S., Fernie, A. R., Fait, A. (2016). Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in plant science, 7, 1022. DOI : 10.3389/fpls.2016.01022
2015
Baldacci-Cresp, F., Maucourt, M., Deborde, C., Pierre, O., Moing, A., Brouquisse, R., Favery, B., Frendo, P. (2015). Maturation of nematode-induced galls in Medicago truncatula is related to water status and primary metabolism modifications. Plant science : an international journal of experimental plant biology, 232, 77-85. DOI : 10.1016/j.plantsci.2014.12.019
Bénard, C., Bernillon, S., Biais, B., Osorio, S., Maucourt, M., Ballias, P., Deborde, C., Colombié, S., Cabasson, C., Jacob, D., Vercambre, G., Gautier, H., Rolin, D., Génard, M., Fernie, AR., Gibon, Y., Moing, A (2015). Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of experimental botany, 66 (11), 3391-404. DOI : 10.1093/jxb/erv151
Chen, W., Kong, J., Qin, C., Yu, S., Tan, J., Chen, YR., Wu, C., Wang, H., Shi, Y., Li, C., Li, B., Zhang, P., Wang, Y., Lai, T., Yu, Z., Zhang, X., Shi, N., Wang, H., Osman, T., Liu, Y., Manning, K., Jackson, S., Rolin, D., Zhong, S., Seymour, GB., Gallusci, P., Hong, Y (2015). Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening. Scientific reports, 5, 9192. DOI : 10.1038/srep09192
Chen, W., Kong, J., Lai, T., Manning, K., Wu, C., Wang, Y., Qin, C., Li, B., Yu, Z., Zhang, X., He, M., Zhang, P., Gu, M., Yang, X., Mahammed, A., Li, C., Osman, T., Shi, N., Wang, H., Jackson, S., Liu, Y., Gallusci, P., Hong, Y (2015). Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening. Scientific reports, 5, 7852. DOI : 10.1038/srep07852
Colombié, S., Nazaret, C., Benard, C., Biais, B., Mengin, V., Sole, M., Fouillen, L., Dieuaide Noubhani, M., Mazat, J.-P., Beauvoit, B., Gibon, Y. (2015). Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit. The Plant journal : for cell and molecular biology, 81 (1), 24-39. DOI : 10.1111/tpj.12685
Dai, Z., Plessis, A., Vincent, J., Duchateau, N., Besson, A., Dardevet, M., Prodhomme, D., Gibon, Y., Hilbert, G., Pailloux, M., Ravel, C., Martre, P (2015). Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.12881
Dumez, J.-N., Milani, J., Vuichoud, B., Bornet, A., Lalande-Martin, J., Tea, I., Yon, M., Maucourt, M., Deborde, C., Moing, A., Frydman, L., Bodenhausen, G., Jannin, S., Giraudeau, P. (2015). . Hyperpolarized NMR of plant and cancer cell extracts at natural abundance. The Analyst, 140 (17), 5860-3. DOI : 10.1039/c5an01203a
Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., Duperier, C., Tremblay-Franco, M., Martin, JF., Jacob, D., Goulitquer, S., Thévenot, EA., Caron, C (2015). Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 31 (9), 1493-5. DOI : 10.1093/bioinformatics/btu813
Grevenstuk, T., Moing, A., Maucourt, M., Deborde, C., Romano, A. (2015). Aluminium stress disrupts metabolic performance of Plantago almogravensis plantlets transiently. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 28 (6), 997-1007. DOI : 10.1007/s10534-015-9884-2
Hédiji, H., Djebali, W., Belkadhi, A., Cabasson, C., Moing, A., Rolin, D., Brouquisse, R., Gallusci, P., Chaïbi, W. (2015). Impact of long-term cadmium exposure on mineral content of Solanum lycopersicum plants: Consequences on fruit production. South African Journal of Botany, 97, 176-181. DOI : 0.1016/j.sajb.2015.01.010
How-Kit, A., Daunay, A., Mazaleyrat, N., Busato, F., Daviaud, C., Teyssier, E., Deleuze, J.-F., Gallusci, P., Tost, J. (2015). Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants. Plant Molecular Biology, 88 (4), 471-485. DOI : 10.1007/s11103-015-0336-8
Jézéquel, T., Deborde, C., Maucourt, M., Zhendre, V., Moing, A., Giraudeau, P. (2015). Absolute quantification of metabolites in tomato fruit extracts by fast 2D NMR. Metabolomics, 11 (5), 1131-1142. DOI : 10.1007/s11306-015-0780-0
Khozaei, M., Fisk, S., Lawson, T., Gibon, Y., Sulpice, R., Stitt, M., Lefebvre, SC., Raines, CA (2015). Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype. The Plant cell, 27 (2), 432-47. DOI : 10.1105/tpc.114.131011
Liu, R., How-Kit, A., Stammitti, L., Teyssier, E., Rolin, D., Mortain-Bertrand, A., Halle, S., Liu, M., Kong, J., Wu, C., Degraeve-Guilbault, C., Chapman, N. H., Maucourt, M., Hodgman, T. C., Tost, J., Bouzayen, M., Hong, Y., Seymour, G. B., Giovannoni, J. J., Gallusci, P. (2015). A DEMETER-like DNA demethylase governs tomato fruit ripening. Proceedings of the National Academy of Sciences of the United States of America, 112 (34), 10804-9. DOI : 10.1073/pnas.1503362112
Martin, J.-C., Maillot, M., Mazerolles, G., Verdu, A., Lyan, B., Migné, C., Defoort, C., Canlet, C., Junot, C., Guillou, C., Manach, C., Jacob, D., Jouan Rimbaud Bouveresse, D., Paris, E., Pujos-Guillot, E., Jourdan, F., Giacomoni, F., Courant, F., Fave, G., Le Gall, G., Chassaigne, H., Tabet, J.-C., Martin, J.-F., Antignac, J.-P., Shintu, L., Defernez, M., Philo, M., Alexandre Gouaubau, M.-C., Amiot, M. J., Bossis, M., Triba, M., Stojilkovic, N., Banzet, N., Molinié, R. ., Bott, R., Goulitquer, S., Caldarelli, S., Rutledge, D. (2015). Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study . Metabolomics, 11 (4), 807-821. DOI : 10.1007/s11306-014-0740-0
Popova, AV., Rausch, S., Hundertmark, M., Gibon, Y., Hincha, DK (2015). The intrinsically disordered protein LEA7 from Arabidopsis thaliana protects the isolated enzyme lactate dehydrogenase and enzymes in a soluble leaf proteome during freezing and drying. Biochimica et biophysica acta. DOI : 10.1016/j.bbapap.2015.05.002
Quentin, A. G., Pinkard, E. A., Ryan, M. G., Tissue, D. T., Baggett, L. S., Adams, H. D., Maillard, P., Marchand, J., Landhäusser, S. M., Lacointe, A., Gibon, Y., Anderegg, W. R., Asao, S., Atkin, O. K., Bonhomme, M., Claye, C., Chow, P. S., Clement-Vidal, A., Davies, N. W., Dickman, L. T., Dumbur, R., Ellsworth, D. S., Falk, K., Galiano, L., Grünzweig, J. M., Hartmann, H., Hoch, G., Hood, S., Jones, J. E., Koike, T., Kuhlmann, I., Lloret, F., Maestro, M., Mansfield, S. D., Martínez-Vilalta, J., Maucourt, M., McDowell, N. G., Moing, A., Muller, B., Nebauer, S. G., Niinemets, Ü., Palacio, S., Piper, F., Raveh, E., Richter, A., Rolland, G., Rosas, T., Saint Joanis, B., Sala, A., Smith, R. A., Sterck, F., Stinziano, J. R., Tobias, M., Unda, F., Watanabe, M., Way, D. A., Weerasinghe, L. K., Wild, B., Wiley, E., Woodruff, D. R. (2015). Non-structural carbohydrates in woody plants compared among laboratories. Tree Physiology, 35 (11), 1146-1165. DOI : 10.1093/treephys/tpv073
Rebolledo, MC., Dingkuhn, M., Courtois, B., Gibon, Y., Clément-Vidal, A., Cruz, DF., Duitama, J., Lorieux, M., Luquet, D (2015). Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Journal of experimental botany. DOI : 10.1093/jxb/erv258
Rolin, D., Teyssier, E., Hong, Y., Gallusci, P. (2015). . Tomato fruit quality improvement facing the functional genomics revolution. In: Palmiro Poltronieri (Ed.), Yiguo Hong (Ed.), Applied Plant Genomics and Biotechnology (p. 154-166). Elsevier Reference Monographs.
Saladié, M., Cañizares, J., Phillips, M. A., Rodriguez-Concepcion, M., Larrigaudière, C., Gibon, Y., Stitt, M., Lunn, J. E., Garcia-Mas, J. (2015). . Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties. BMC Genomics, 16, 440. DOI : 10.1186/s12864-015-1649-3
Salek, R., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., Correa, E., Reijmers, T., Rosato, A., Tenori, L., Turano, P., Marin, S., Deborde, C., Jacob, D., Rolin, D., Dartigues, B., Conesa, P., Haug, K., Rocca-Serra, P., O’Hagan, S., Hao, J., Vliet, M. v., Sysi-Aho, M., Ludwig, C., Bouwman, J., Cascante, M., Ebbels, T., Griffin, J. L., Moing, A., Nikolski, M., Oresic, M., Sansone, S.-A., Viant, M. R., Goodacre, R., Günther, U. L., Hankemeier, T., Luchinat, C., Walther, D., Steinbeck, C. (Auteur de correspondance) (2015). . COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics. DOI : 10.1007/s11306-015-0810-y
Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V (2015). Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1. PloS one, 10 (3), e0120291. DOI : 10.1371/journal.pone.0120291
Teyssier, E., Boureau, L., Chen, W., Liu, R., Degraeve-Guilbault, C., Stammitti, L., Hong, Y., Gallusci, P. (2015). . Epigenetic regulation of fleshy fruit development and ripening. In: Palmiro Poltronieri (Ed.), Yiguo Hong (Ed.), Applied Plant Genomics and Biotechnology (p. 133-152). Elsevier Reference Monographs.
Zhang, N., Gibon, Y., Wallace, JG., Lepak, N., Li, P., Dedow, L., Chen, C., So, YS., Kremling, K., Bradbury, PJ., Brutnell, T., Stitt, M., Buckler, ES (2015). Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population. Plant physiology, 168 (2), 575-83. DOI : 10.1104/pp.15.00025
2014
Allwood, J. W., Cheung, W., Xu, Y., Mumm, R., De Vos, R. C. H., Deborde, C., Biais, B., Maucourt, M., Berger, Y., Schaffer, A. A., Rolin, D., Moing, A., Hall, R. D., Goodacre, R. (2014). Metabolomics in melon: a new opportunity for aroma analysis. Phytochemistry, 99, 61-72. DOI : 10.1016/j.phytochem.2013.12.010
Ariizumi, T., Kishimoto, S., Kakami, R., Maoka, T., Hirakawa, H., Suzuki, Y., Ozeki, Y., Shirasawa, K., Bernillon, S., Okabe, Y., Moing, A., Asamizu, E., Rothan, C., Ohmiya, A., Ezura, H. (2014). Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum). The Plant journal : for cell and molecular biology, 79 (3), 453-465. DOI : 10.1111/tpj.12570
Atanasova-Penichon, V., Bernillon, S., Marchegay, G., Lornac, A., Pinson-Gadais, L., Ponts, N., Zehraoui, E., Barreau, C., Richard-Forget, F. (2014). Bioguided isolation, characterization, and biotransformation by Fusarium verticillioides of maize kernel compounds that inhibit fumonisin production. Molecular plant-microbe interactions : MPMI, 27 (10), 1148-1158. DOI : 10.1094/MPMI-04-14-0100-R
Beauvoit, B., Colombie, S., Monier, A., Andrieu, M.-H., Biais, B., Benard, C., Cheniclet, C., Dieuaide Noubhani, M., Nazaret, C., Mazat, J.-P., Gibon, Y. (2014). Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion. The Plant cell, 26 (8), 3224-42. DOI : 10.1105/tpc.114.127761
Bermúdez, L., de Godoy, F., Baldet, P., Demarco, D., Osorio, S., Quadrana, L., Almeida, J., Asis, R., Gibon, Y., Fernie, A. R., Rossi, M., Carrari, F. (2014). Silencing of the tomato Sugar Partitioning Affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism. Plant Journal, 77 (5), 676-87. DOI : 10.1111/tpj.12418
Beurton-Aymar, M.; Nguyen, T. V.-N.; Colombie, S. Metabolic network reconstruction and their topological analysis. In: Martine Dieuaide-Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis . Methods and Protocols, . Methods in Molecular Biology, 2014, 1090, p. 19-38. New York, USA : Springer Science+Business Media.
Biais, B., Benard, C., Beauvoit, B., Colombie, S., Prodhomme, D., Menard, G., Bernillon, S., Gehl, B., Gautier, H., Ballias, P., Mazat, J.-P., Sweetlove, L. J., Génard, M., Gibon, Y. (2014). Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology, 164, 1204-1221. DOI : 10.1104/pp.113.231241
Chaher, N., Arraki, K., Dillinseger, E., Temsamani, H., Bernillon, S., Pedrot, E., Delaunay, J.-C., Mérillon, J.-M., Monti, J.-P., Izard, J.-C., Atmani, D., Richard, T. (2014). Bioactive stilbenes from Vitis vinifera grapevine shoots extracts. Journal of the Science of Food and Agriculture, 94, 951-954. DOI : 10.1002/jsfa.6341
Deborde C & Jacob D (2014) MeRy-B, a Metabolomic Database and Knowledge Base for Exploring Plant Primary Metabolism. In Sriram G (ed) Plant Metabolism: Methods and Protocols, Methods in Molecular Biology Vol. 1083, pp 3-16.
Desnoues, E., Gibon, Y., Baldazzi, V., Signoret, V., Génard, M., Quilot-Turion, B. (2014). Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios. BMC plant biology, 14 (1), 336 : 1-12. DOI : 10.1186/s12870-014-0336-x
Dieuaide Noubhani, M. (Editeur), Alonso, A. P. (Editeur). Plant Metabolic Flux Analysis. Methods and Protocols. Methods in Molecular Biology, 1090. New York, USA : Springer Science+Business Media, 2014, 365 p. DOI : 10.1007/978-1-62703-688-7
Dieuaide Noubhani, M.; Alonso, A. P. Application of metabolic flux analysis to plants. In: Martine Dieuaide Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis. Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 1-17. New York, USA : Springer Science+Business Media. DOI : 10.1007/978-1-62703-688-7_1
Dumont, J., Keski-Saari, S., Keinänen, M., Cohen, D., Ningre, N., Kontunen-Soppela, S., Baldet, P., Gibon, Y., Dizengremel, P., Vaultier, M.-N., Jolivet, Y., Oksanen, E., Le Thiec, D. (2014). Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes. Tree Physiology, 34 (3), 253-66. DOI : 10.1093/treephys/tpu004
Génard, M., Baldazzi, V., Gibon, Y. (2014). Metabolic studies in plant organs: don't forget dilution by growth. Frontiers in Plant Science, 5, 1-5. DOI : 10.3389/fpls.2014.00085
Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Petera, M., Duperier, C., Tremblay Franco, M., Martin, J.-F., Jacob, D., Goulitquer, S., Thévenot, E. A., Caron, C. (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 2 p. DOI : 10.1093/bioinformatics/btu813
Gibon, Y. (2014). Why bring post-genomics into the phosphorus-impoverished bush?. Plant, cell & environment, 37 (6), 1273-5. DOI : 10.1111/pce.12265
Hooks MA, Allwood JW, Harrison JKD, Kopka J, Erban A, Goodacre R, Balk J (2014) Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis. Biochem J 463, 309-317
Martin, J.-C., Maillot, M., Mazerolles, G., Verdu, A., Lyan, B., Migne, C., Defoort, C., Canlet, C., Junot, C., Guillou, C., Manach, C., Jacob, D., Jouan-Rimbaud Bouveresse, D., Paris, E., Pujos-Guillot, E., Jourdan, F., Giacomoni, F., Courant, F., Fave, G., Le Gall, G., Chassaigne, H., Tabet, J.-C., Martin, J.-F., Antignac, J.-P., Shintu, L., Defernez, M., Philo, M., Alexandre-Gouaubau, M.-C., Amiot-Carlin, M. J., Bossis, M., Triba, M. N., Stojilkovic, N., Banzet, N., Molinié, R., Bott, R., Goulitquer, S., Caldarelli, S., Rutledge, D. (2014). Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study . Metabolomics, online first, 1-15. DOI : 10.1007/s11306-014-0740-0
Menard, G.; Biais, B.; Prodhomme, D.; Ballias, P.; Gibon, Y. Analysis of enzyme activities. In: Martine Dieuaide-Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis . Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 249-59. New York, USA : Springer Science+Business Media. DOI : 10.1007/978-1-62703-688-7_15
Pianelli, K.; Monier, A.; Andrieu, M.-H.; Beauvoit, B.; Dieuaide Noubhani, M. (14)C pulse labeling to estimate external fluxes and turnovers in primary metabolism. In: Martine Dieuaide Noubhani, Ana Paula Alonso, dir., Plant Metabolic Flux Analysis. Methods and Protocols. Methods in molecular biology (Clifton, N.J.), 2014, 1090, 41-52. New York, USA : Springer Science+Business Media. DOI : 10.1007/978-1-62703-688-7_3
Recht, L., Töpfer, N., Batushansky, A., Sikron, N., Zarka, A., Gibon, Y., Nikoloski, Z., Fait, A., Boussiba, S. (2014). Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen-Starvation in the Green Alga Haematococcus pluvialis. The Journal of biological chemistry, 289 (44), 30387-30403. DOI : 10.1074/jbc.M114.555144
Stitt, M., Gibon, Y. (2014). Why measure enzyme activities in the era of systems biology?. Trends in Plant Science, 19 (4), 256-65. DOI : 10.1016/j.tplants.2013.11.003
Wallace, JG., Bradbury, PJ., Zhang, N., Gibon, Y., Stitt, M., Buckler, ES (2014). Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize. PLoS genetics, 10 (12), e1004845. DOI : 10.1371/journal.pgen.1004845
2013
Ahmad, J. N., C. Garcion, E. Teyssier, M. Hernould, P. Gallusci, P. Pracros, J. Renaudin, and S. Eveillard. (2013). Stolbur phytoplasma infection affects DNA methylation processes in tomato plants. Plant Pathology 62:205-216.
Bernillon S, Biais B, Deborde C, Maucourt M, Cabasson C, Gibon Y, Hansen TH, Husted S, De Vos CH, Mumm R, Jonker H, Ward JL, Miller SJ, Baker JM, Burger J, Tadmor Y, Beale MH, Schjoerring JK, Schäffer AA, Rolin D, Hall RD & Moing A (2013) Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics 9: 57-77
Bureau S, Quilot-Turion B, Signoret V, Renaud C, Maucourt M, Bancel D, Renard CMGC (2013). Determination of the composition in sugars and organic acids in peach using mid-infrared spectroscopy: comparison of prediction results according to datasets and different reference methods. Analytical Chemistry, 85: 11312-11318.
Carillo P, Feil R, Gibon Y, Satoh-Nagasawa N, Jackson D, Bläsing OE, Stitt M, Lunn JE (2013) A fluorometric assay for trehalose in the picomole range. Plant Methods 9: 21.
Colombié S & Beurton-Aimar M (2013) Metabolic network reconstructions and their topological analysis. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 19-38.
Dieuaide-Noubhani M & Alonso AP (2013) Application of Metabolic Flux Analysis to Plants. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 1-17.
Fontaine JX, Terce-Laforgue T, Armengaud P, Clement G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B & Dubois F (2013) Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24: 4044-4065.
Garchery C, Gest N, Do PT, Alhagdow M, Baldet P, Menard G, Rothan C, Massot C, Gautier H, Aarrouf J, Fernie AR & Stevens R. (2013) A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water-deficit. Plant Cell Environment 36: 159-175.
Jacob D, Deborde C & Moing A (2013) An efficient spectra processing method for metabolite identification from 1H-NMR metabolomics data. Analytical and Bioanalytical Chemistry 405: 5049-5061.
Mazat J-P & Beauvoit B (2013) Modelling metabolic networks – the theories of metabolism. In Metabolomics coming of age with its technological technology. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 593-621.
Ménard G, Biais B, Prodhomme D, Ballias P & Gibon Y (2013) Analysis of Enzyme Activities. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 249-259.
Ménard G, Biais B, Prodhomme D, Ballias P, Petit J, Just D, Rothan C, Rolin D, Gibon Y (2013) High throughput biochemical phenotyping for plants. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 407-439.
Pascual L, Xu J, Biais B, Maucourt M, Ballias P, Bernillon S, Deborde C, Jacob D, Desgroux A, Faurobert M, Bouchet J-P, Gibon Y, Moing A & Causse M (2013). Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach. Journal of Experimental Botany, 64: 5737-5752.
Pianelli K, Monier A, Andrieu M-H, Beauvoit B, Dieuaide-Noubhani M (2013) 14C pulse labeling to estimate external fluxes and turnovers in primary metabolism. In Dieuaide-Noubhani M & Alonso P (eds) Plant Metabolic Flux Analysis. Methods in Molecular Biology Vol. 1090, pp 41-52
Pribat A, Boureau L, Mortain-Bertrand A, Bert L, Rolin D, Teyssier E & Gallusci P (2013) Metabolic Engineering of Isoprenoid Biosynthesis in Natural Products (Publisher: Springer Berlin Heidelberg). pp 2813-2851.
Rolin D, Deborde C, Maucourt M, Cabasson C, Fauvelle F, Jacob D, Canlet C, Moing A (2013) High-resolution 1H-NMR spectroscopy and beyond to explore plant metabolome. In Rolin D (ed) Metabolomics coming of age with its technological diversity, book series Advances in Botanical Research Vol 67, pp 1-66.
Sagar M, Chervin C, Mila I, Hao YW, Roustan JP, Benichou M, Gibon Y, Biais B, Maury P, Latche A, Pech JC, Bouzayen M, Zouine M (2013) SlARF4, an Auxin Response Factor Involved in the Control of Sugar Metabolism during Tomato Fruit Development. Plant Physiology 161: 1362-1374.
Sulpice R, Tschoep H, Antonio C, Kleessen S, Larhlimi A, Ishihara H, Nikoloski Z, Gibon Y, Fernie AR, Stitt M (2013) Impact of the carbon and nitrogen supply on the connectivity between metabolism and biomass in a large panel of Arabidopsis accessions. Plant Physiology 162: 347-63.
Tercé-Laforgue T, Bedu M, Dargel-Grafin C, Dubois F, Gibon Y, Restivo FM, Hirel B (2013) Resolving the Role of Plant Glutamate Dehydrogenase: II. Physiological Characterization of Plants Overexpressing the Two Enzyme Subunits Individually or Simultaneously. Plant Cell Physiology 54: 1635-1647.
2012
Baldacci F, Chang C, Maucourt M, Deborde C, Hopkins J, Lecomte P, Bernillon S, Brouquisse R, Moing A, Abad P, Hérouart D, Puppo A, Favery B & Frendo P (2012). (Homo)glutathione deficiency impairs root-knot nematode development in Medicago truncatula. Plos Pathogens 8: e1002471.
Ben Akal-Ben Fatma Y, Pianelli K, Dieuaide-Noubhani M, Le Menn A, Deborde C, Maucourt M, Andrieu M-H, Rolin D, Rothan C, Moing A, Bouzid S & Cabasson C (2012) 1H-NMR metabolomics: Profiling method for a rapid and efficient screening of transgenic plants . African Journal of Biotechnology 11: 11386-11399.
Biais B, Bernillon S, Deborde C, Cabasson C, Rolin D, Tadmor Y, Burger J, Schaffer AA, Moing A (2012) Precautions for harvest, sampling, storage and transport of crop plant metabolomics samples. In N Hardy, R Hall, eds, Plant Metabolomics. Humana Press, Totowa, U.S.A., pp 51-63
Calingacion M, Boualaphanh C, Daygon V, Anacleto R, Sackville Hamilton R, Biais B, Deborde C, Maucourt M, Moing A, Mumm R, de Vos R, Erban A, Kopka J, Hansen T, Laursen K, Schjoerring J, Hall R & Fitzgerald M (2012). A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8: 771-783.
Dal Santo S, Stampfl H, Krasensky J, Kempa S, Gibon Y, Petutschnig E, Rozhon W, Heuck A, Clausen T & Jonak C (2012) Stress-Induced GSK3 Regulates the Redox Stress Response by Phosphorylating Glucose-6-Phosphate Dehydrogenase in Arabidopsis. Plant Cell 24: 3380-3392.
Fontaine J-X, Tercé-Laforgue T, Armengaud P, Clément G, Renou J-P, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B & Dubois F (2012) Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24: 4044-4065.
Gibon Y, Rolin D, Deborde C, Bernillon S, Moing A (2012) New opportunities in metabolomics and biochemical phenotyping for plant systems biology In U Roessner, ed, Metabolomics, InTech, pp Available from: http://www.intechopen.com/articles/show/title/new-opportunities-in-metabolomics-and-biochemical-phenotyping-for-plant-systems-biology
Gibon Y, Rolin D (2012) Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material. In N Hardy, R Hall, eds, Plant Metabolomics. Methods in Molecular Biology, Humana Press, Totowa, U.S.A., 860:13-30
Hädrich N, Hendriks JH, Kötting O, Arrivault S, Feil R, Zeeman SC, Gibon Y, Schulze WX, Stitt M & Lunn JE (2012) Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. Plant Journal 70: 231-242.
Mounet F, Moing A, Kowalczyk M, Rohrmann J, Petit J, Garcia V, Maucourt M, Yano K, Deborde C, Aoki K, Berges H, Granell A, Fernie AR, Bellini C, Rothan C & Lemaire-Chamley M (2012) Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development . Journal of Experimental Botany 63: 4901-4917.
Poorter H, Fiorani F, Planck M, Schurr U, Finck A, Gibon Y, Usadel B, Munns R, Atkin OK, Tardieu F & Pons TL (2012) The art of growing plants for experimental purposes: a practical guide for the plant biologist. Functional Plant Biology 39: 821-838.
Sansone S-A, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bouguerelet L, Burns G, Chapman B, Clark T, Coleman L-A, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merril E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios J & Hide W (2012) Toward interoperable bioscience data. Nature Genetics 44: 121-126.
Zhou T, Zhang H, Lai T, Qin C, Shi N, Wang H, Jin M, Zhong S, Fan Z, Liu Y, Wu Z, Jackson S, Giovannoni JJ, Rolin D, Gallusci P & Hong Y (2012) Virus-induced gene complementation reveals a transcription factor network in modulation of tomato fruit ripening. Scientific Reports 2: 836.
