Complete list of references on the HAL-INRAE portal : https://hal.inrae.fr/BFP

Online first

Baby, V., Ambroset, C., Gaurivaud, P., Falquet, L., Boury, C., Guichoux, E., Jores, J., Lartigue, C., Tardy, F., Sirand-Pugnet, P. (2023). Comparative genomics of Mycoplasma feriruminatoris, a fast-growing pathogen of wild Caprinae. bioRxiv, 2023.2003.2021.533155. DOI : 10.1101/2023.03.21.533155

Branchereau, C., Hardner, C., Dirlewanger, E., Wenden, B., Le Dantec, L., Alletru, D., Parmentier, J., Ivancic, A., Giovannini, D., Brandi, F., Lopez-Ortega, G., Garcia- Montiel, F., Quilot-Turion, B., Quero-Garcia, J. (2023) Genotype-by-environment and QTL-by-environment interactions in sweet cherry (Prunus avium L.) for flowering date. Front. Plant Sci.. DOI: 10.3389/fpls.202.1142974

Colombié, S., Prigent, S., Cassan, C., Hilbert-Masson, G., Renaud, C., Dell'Aversana, E., Carillo, P., Moing, A., Beaumont, C., Beauvoit, B., McCubbin, T., Nielsen, L. K., Gibon, Y. (2023). Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth-defence trade-off. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.16409

Decros, G., Dussarrat, T., Baldet, P., Cassan, C., Cabasson, C., Dieuaide-Noubhani, M., Destailleur, A., Flandin, A., Prigent, S., Mori, K., Colombié, S., Jorly, J., Gibon, Y., Beauvoit, B., Pétriacq, P. (2023). Enzyme-based kinetic modelling of ASC-GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability. The New phytologist. DOI : 10.1111/nph.19160

Denoyes, B., Prohaska, A., Petit, J., Rothan, C. (2023). Deciphering the genetic architecture of fruit color in strawberry. Journal of experimental botany, erad245. DOI : 10.1093/jxb/erad245

Dollinger, J., Pétriacq, P., Flandin, A., Samouelian, A. (2023). Soil metabolomics: A powerful tool for predicting and specifying pesticide sorption. Chemosphere, 139302. DOI : 10.1016/j.chemosphere.2023.139302

Douliez, J., Saint Jalmes, A. (2023). Bulk, one step generation of single-core double emulsions from polymer-osmose-induced aqueous phase separation in polar oil droplets. ChemRxiv, preprint.  DOI : 10.26434/chemrxiv-2023-v5gll

Guesdon, G., Gourgues, G., Rideau, F., Ipoutcha, T., Manso-Silván, L., Jules, M., Sirand-Pugnet, P., Blanchard, A., Lartigue, C. (2023). Combining fusion of cells with CRISPR-Cas9 editing for the cloning of large DNA fragments or complete bacterial genomes in yeast. bioRxiv, 2023.2003.2014.531922. DOI :  10.1101/2023.03.14.531922

Ipoutcha, T., Tsarmpopoulos, I., Gourgues, G., Baby, V., Dubos, P., Hill, G. E., Dowling, A., Arfi, Y., Lartigue, C., Thebault, P., Bonneaud, C., Sirand-Pugnet, P. (2023). Evolution of the CRISPR-Cas9 defence system following a bacterial host shift. bioRxiv, 2023.2003.2014.532377. DOI : 10.1101/2023.03.14.532377

Labadie, M., Guy, K., Demené, M.-N., Caraglio, Y., Heidsieck, G., Gaston, A., Rothan, C., Guédon, Y., Pradal, C., Denoyes, B. (2023). Spatio-temporal analysis of strawberry architecture: insights into the control of branching and inflorescence complexity. Journal of Experimental Botany. DOI : 10.1093/jxb/erad097

Maclot, F., Debue, V., Malmstrom, C. M., Filloux, D., Roumagnac, P., Eck, M., Tamisier, L., Blouin, A. G., Candresse, T., Massart, S. (2023). Long-Term Anthropogenic Management and Associated Loss of Plant Diversity Deeply Impact Virome Richness and Composition of Poaceae Communities. Microbiology spectrum, e0485022. DOI : 10.1128/spectrum.04850-22

Renaudin, J.-P., Cheniclet, C., Rouyère, V., Chevalier, C., Frangne, N. (2023). The Cell Pattern of Tomato Fruit Pericarp is Quantitatively and Differentially Regulated by the Level of Gibberellin in Four Cultivars. Journal of Plant Growth Regulation. DOI : 10.1007/s00344-023-10978-1

Rivarez, M.P.S., Faure, C., Svanella-Dumas, L., Pecman, A., Tušek-Žnidaric, M., Schönegger, D., de Jonghe, K., Blouin, A., Rasmussen, D., Massart, S., Ravnikar, M., Kutnjak, D., Marais, A., Candresse, T. (2023). Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse host plants and in global sequencing data. Phytopathology, accepté pour publication.

Svanella-Dumas, L., Tsarmpopoulos, I., Marais, A., Faure, C., Theil, S., Glasa, M., Predajna, L., Gaudin, J., Tian, S., Porcher, L., Gentit, P., Leite De Oliveira, M., Krause-Sakate, R., Candresse, T. (2023). Molecular and biological characterization of novel and known Sequiviridae members infecting lettuce. Phytopathology. DOI : 10.1094/PHYTO-03-23-0095-R

Tourdot, E., Mauxion, J. P., Gonzalez, N., & Chevalier, C. (2023). Endoreduplication in plant organogenesis: a mean to boost fruit growth. Journal of experimental botany, erad235. DOI : 10.1093/jxb/erad235

2023

Arricau-Bouvery, N., Dubrana, M. P., Canuto, F., Duret, S., Brocard, L., Claverol, S., Malembic-Maher, S., Foissac, X. (2023). Flavescence dorée phytoplasma enters insect cells by a clathrin-mediated endocytosis allowing infection of its insect vector. Scientific reports, 13(1), 2211. DOI : 10.1038/s41598-023-29341-1

Bournonville, C., Mori, K., Deslous, P., Decros, G., Blomeier, T., Mauxion, J. P., Jorly, J., Gadin, S., Cassan, C., Maucourt, M., Just, D., Brès, C., Rothan, C., Ferrand, C., Fernandez-Lochu, L., Bataille, L., Miura, K., Beven, L., Zurbriggen, M. D., Pétriacq, P., Gibon, Y., Baldet, P. (2023). Blue light promotes ascorbate synthesis by deactivating the PAS/LOV photoreceptor that inhibits GDP-L-galactose phosphorylase. The Plant cell, 35 (7), 2615-2634. DOI : 10.1093/plcell/koad108

Candresse, T., Faure, C., Marais, A. (2022). First report of grapevine red globe virus (GRGV) and grapevine rupestris vein feathering virus (GRVFV) infecting grapevine (Vitis vinifera L.) in Portugal. Plant Disease, 107 (3), 974. DOI : 10.1094/pdis-06-22-1326-pdn

Candresse, T., Svanella-Dumas, L., Marais, A., Depasse, F., Faure, C., Lefebvre, M. (2023). Identification of Seven Additional Genome Segments of Grapevine-Associated Jivivirus 1. Viruses, 15(1), 39. DOI : 10.3390/v15010039

Canlet, C., Deborde, C., Cahoreau, E., Da Costa, G., Gautier, R., Jacob, D., Jousse, C., Lacaze, M., Le Mao, I., Martineau, E., Peyriga, L., Richard, T., Silvestre, V., Traïkia, M., Moing, A., Giraudeau, P. (2023). NMR metabolite quantification of a synthetic urine sample: an inter-laboratory comparison of processing workflows. Metabolomics : Official journal of the Metabolomic Society, 19(7), 65. DOI :  10.1007/s11306-023-02028-4

Diouf, M. B., Guyader, S., Nopoly, M. M., Gaspard, O., Filloux, D., Candresse, T., Marais, A., Teycheney, P. Y., Umber, M. (2023). Molecular diversity of yam virus Y and identification of banana mild mosaic virus isolates infecting yam (Dioscorea spp.). Archives of virology, 168(7), 180. DOI : 10.1007/s00705-023-05809-3

Fontdevila Pareta, N., Khalili, M., Maachi, A., Rivarez, M. P. S., Rollin, J., Salavert, F., Temple, C., Aranda, M., A, Boonham, N., Botermans, M., Candresse, T., Fox, A., Hernando, Y., Kutnjak, D., Marais, A., Petter, F., Ravnikar, M., Selmi, I., Tahzima, R., Trontin, C., Wetzel, T., Massart, S. (2023). Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis. Frontiers in Microbiology, 14, 1181562.DOI : 10.3389/fmicb.2023.1181562

Garbelotto, M., Rubino, L., Gonthier, P., Candresse, T., Skoric, D. (2023). The Journal of Plant Pathology Editors' Choice February 2023, 105, 1-3. DOI : 10.1007/s42161-023-01312-5

Großkinsky, D. K., Faure, J. D., Gibon, Y., Haslam, R. P., Usadel, B., Zanetti, F., Jonak, C. (2023). The potential of integrative phenomics to harness underutilized crops for improving stress resilience. Frontiers in plant science, 14, 1216337. DOI : 10.3389/fpls.2023.1216337

Haegeman, A., Foucart, Y., de Jonghe, K., Goedefroit, T., Al Rwahnih, M., Boonham, N., Candresse, T., Gaafar, Y., Hurtado-Gonzales, O., Kogej Zwitter, Z., Kutnjak, D., Lamovšek, J., Lefebvre, M., Malapi, M., Mavrič Pleško, I., Önder, S., Reynard, J.-S., Salavert Pamblanco, F., Schumpp, O., Stevens, K., Pal, C., Tamisier, L., Ulubaş Serçe, Ç., van Duivenbode, I., Waite, D., Hu, X., Ziebell, H., & Massart, S. (2023). Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. Plants, 12(11), 2139. DOI : 10.3390/plants12112139

Helm, J., Salomón, R., L, Hilman, B., Muhr, J., Knohl, A., Steppe, K., Gibon, Y., Cassan, C., Hartmann, H. (2023). Differences between tree stem CO 2 efflux and O 2 influx rates cannot be explained by internal CO 2 transport or storage in large beech trees. Plant, Cell and Environment, 46 (9), 2680-2693. DOI : 10.1111/pce.14614

Huang, Y., An, J., Sircar, S., Bergis, C., Lopes, C. D., He, X., Da Costa, B., Tan, F. Q., Bazin, J., Antunez-Sanchez, J., Mammarella, M. F., Devani, R. S., Brik-Chaouche, R., Bendahmane, A., Frugier, F., Xia, C., Rothan, C., Probst, A. V., Mohamed, Z., Bergounioux, C., … Benhamed, M. (2023). HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions. Nature communications, 14(1), 469. DOI : 10.1038/s41467-023-36227-3

Jiu, S., Chen, B., Dong, X., Lv, Z., Wang, Y., Yin, C., Xu, Y., Zhang, S., Zhu, J., Wang, J., Liu, X., Sun, W., Yang, G., Li, M., Li, S., Zhang, Z., Liu, R., Wang, L., Manzoor, M. A., Quero-Garcia, J., Wang, S., Lei, Y., Yang, L., Dirlewanger, E., Dong, Y., Zhang, C. (2023). Chromosome-scale genome assembly of Prunus pusilliflora provides novel insights into genome evolution, disease resistance, and dormancy release in Cerasus L. Horticulture Research, 10(5). DOI :  10.1093/hr/uhad062

Khalili, M., Candresse, T., Koloniuk, I., Safarova, D., Brans, Y., Faure, C., Delmas, M., Massart, S., Aranda, M. A., Caglayan, K., Decroocq, V., Drogoudi, P., Glasa, M., Pantelidis, G., Navratil, M., Latour, F., Spak, J., Pribylova, J., Mihalik, D., Palmisano, F., Saponari, A., Necas, T., Sedlak, J., Marais, A. (2023). The Expanding Menagerie of Prunus-Infecting Luteoviruses. Phytopathology, 113(2), 345-354. DOI :  10.1094/phyto-06-22-0203-r

Lacrampe, N., Colombié, S., Dumont, D., Nicot, P., Lecompte, F., Lugan, R. (2023). Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems. Planta, 257(2), 41. DOI : 10.1007/s00425-022-04065-0

Lippi, N., Senger, E., Karhu, S., Mezzetti, B., Cianciabella, M., Denoyes, B., Sönmez, D., Ayvaz, Fidelis, M., Gatti, E., Höfer, M., Kafkas, N., Ebru, Mazzoni, L., Mccallum, S., Olbricht, K., Orsucci, S., Osorio, S., Pinczinger, D., Predieri, S., Rokka, S., Sánchez-Sevilla, J., Federico, Savini, G., Soria, C., Usadel, B., Zucchi, P., Chiara, M. (2023). Development and Validation of a Multilingual Lexicon as a Key Tool for the Sensory Analyses and Consumer Tests of Blueberry and Raspberry Fruit. Agriculture, 13(2), 314. DOI : 10.3390/agriculture13020314

Lourkisti, R., Antoine, S., Pailly, O., Luro, F., Gibon, Y., Oustric, J., Santini, J., & Berti, L. (2023). GABA shunt pathway is stimulated in response to early defoliation-induced carbohydrate limitation in Mandarin fruits. Heliyon, 9(4), e15573. DOI : 10.1016/j.heliyon.2023.e15573

Moing, A., Berton, T., Roch, L., Diarrassouba, S., Bernillon, S., Arrivault, S., Deborde, C., Maucourt, M., Cabasson, C., Bénard, C., Prigent, S., Jacob, D., Gibon, Y., Lemaire-Chamley, M. (2023). Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites. BMC plant biology, 23(1), 365. DOI : 10.1186/s12870-023-04370-0

Moury, B., Michon, T., Simon, V., Palloix, A. (2023). A single nonsynonymous substitution in the RNA-dependent RNApolymerase of Potato virus y allows the simultaneous breakdown of two different forms of antiviral resistance in Capsicum annuum. Viruses, 15(1), 1081. DOI : 10.3390/v15051081

Mrkvová, M., Achs, A., Alaxin, P., Šubr, Z., Predajňa, L., Zetochová, E., Hauptvogel, P., Šoltys, K., Candresse, T., Glasa, M. (2023). Phaseolus vulgaris alphaendornavirus-1 is frequent in bean germplasm in Slovakia and shows low molecular variability. Acta Virologica, 67. DOI :  10.3389/av.2023.11484

Muñoz, P., Castillejo, C., Gómez, J. A., Miranda, L., Lesemann, S., Olbricht, K., Petit, A., Chartier, P., Haugeneder, A., Trinkl, J., Mazzoni, L., Masny, A., Zurawicz, E., Ziegler, F. M. R., Usadel, B., Schwab, W., Denoyes, B., Mezzetti, B., Osorio, S., Sánchez-Sevilla, J. F., … Amaya, I. (2023). QTL analysis for ascorbic acid content in strawberry fruit reveals a complex genetic architecture and association with GDP-L-galactose phosphorylase. Horticulture research, 10(3), uhad006. DOI :  10.1093/hr/uhad006

Reynoud, N., Geneix, N., D’orlando, A., Petit, J., Mathurin, J., Deniset-Besseau, A., Marion, D., Rothan, C., Lahaye, M., Bakan, B. (2023). Cuticle architecture and mechanical properties: a functional relationship delineated through correlated multimodal imaging. New Phytologist, 238(5), 2033-2046. DOI : 10.1111/nph.18862

Shtern, A., Keren-Keiserman, A., Mauxion, J. P., Furumizu, C., Alvarez, J. P., Amsellem, Z., Gil, N., Motenko, E., Alkalai-Tuvia, S., Fallik, E., Gonzalez, N., & Goldshmidt, A. (2023). Solanum lycopersicum CLASS-II KNOX genes regulate fruit anatomy via gibberellin-dependent and independent pathways. Journal of experimental botany, 74(3), 848–863. DOI : 10.1093/jxb/erac454

Svanella-Dumas, L., Faure, C., Marais, A., Candresse, T. (2023). First report of ash shoestring-associated virus (ASaV) infecting European ash (Fraxinus excelsior L.) in France. Plant Disease, 107(5), 1640. DOI : 10.1094/pdis-09-22-2272-pdn

Svanella-Dumas, L., Vitry, C., Valade, R., Robin, N., Thibord, J.B., Marais, A., Candresse, T. (2023).  First Report of Barley Virus G Infecting Winter Barley (Hordeum vulgare) in France. Plant Disease, 107 (2), 591. DOI : 10.1094/PDIS-06-22-1294-PD

Teber, S., Gürcan, K., Brevet, M., Palmisano, F., Candresse, T. Dallot, S. (2023), High genetic diversity suggests a long evolutionary history of plum pox virus-M in Turkey. Plant Pathology, 72(2), 300-311. DOI : 10.1111/ppa.13663

Ternjak, T., Barreneche, T., Šiško, M., Ivančič, A., Šušek, A., Quero-García, J. (2023). Genetic diversity and structure of Slovenian native germplasm of plum species (P. domestica L., P. cerasifera Ehrh. and P. spinosa L.). Frontiers in plant science, 14, 1150459. DOI :  10.3389/fpls.2023.1150459

Tsarmpopoulos, I., Marais, A., Faure, C., Theil, S., Candresse, T. (2023). A new potyvirus from hedge mustard (Sisymbrium officinale (L.) Scop.) sheds light on the evolutionary history of turnip mosaic virus. Archives of Virology, 168(1), 14. DOI : 10.1007/s00705-022-05682-6

Kogej Zwitter, Z., Seljak, G., Jakomin, T., Brodarič, J., Vučurović, A., Pedemay, S., Salar, P., Malembic-Maher, S., Foissac, X., Mehle, N. (2023). Epidemiology of flavescence dorée and hazelnut decline in Slovenia: geographical distribution and genetic diversity of the associated 16SrV phytoplasmas. Frontiers in plant science, 14, 1217425. DOI : 10.3389/fpls.2023.1217425

2022

Andrieu, M.-H., Atienza, I., Cassan, C., Marmagne, A., Just, D., Bienvenut, W. V., Gibon, Y., Colombie, S. (2022). 15N nitrogen labelling on tomato fruit pericarp using plants cultivated in semi-controlled green house conditions - Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard. NOV'AE, Numéro Régulier juin 2022(05). DOI :  10.17180/novae-2022-NO-art05

Ayed, C., Hamdi, I., Najar, A., Marais, A., Faure, C., Candresse, T., T., Dridi, B. A. M. (2022). First report of garlic viruses A, B and C on garlic (Allium sativum L.) in Tunisia. Plant Disease, 106 (4). DOI : 10.1094/pdis-08-21-1706-pdn

Babalola, B. M., Faure, C., Marais,A., Fraile, A., Garcia‐arenal, F., Candresse, T. (2022). First report of Apium virus Y in wild carrot (Daucus carota ssp. carota) in Spain. New Disease Reports, 45(2), e12097. DOI : 10.1002/ndr2.12097

Babalola, B. M., Faure, C., Marais, A., Fraile, A., Garcia-Arenal, F., Candresse, T. (2022). First report of carrot torrado virus 1 (CaTV1) naturally infecting carrots in Spain. Journal of Plant Pathology, 104,1565. DOI : 10.1007/s42161-022-01196-x

Babalola, B., M, Schönegger, D., Faure, C., Marais, A., Fraile, A., Garcia-Arenal, F., Candresse, T. (2022). Identification of two novel putative satellite RNAs with hammerhead structures in the virome of French and Spanish carrot samples. Archives of Virology, 167, 2287-2292. DOI : 10.1007/s00705-022-05538-z

Ben Abdallah, Z., Sghaier, H., Gammoudi, I., Morote, F., Cassagnère, S., Romo, L., Beven, L., Grauby-Heywang, C., Cohen-Bouhacina, T. (2022). Design, Elaboration, and Characterization of an Immunosensor for the Detection of a Fungal Toxin in Foodstuff Analyses. Chemosensors, 10(4), 137. DOI :  10.3390/chemosensors10040137

Bollier, N., Gonzalez, N., Chevalier, C., Hernould, M. (2022). Zinc Finger-Homeodomain (ZHD) and Mini Zinc Finger (MIF) proteins are key players in plant growth and responses to environmental stresses. Journal of Experimental Botany, 73(14), 4662-4673. DOI : 10.1093/jxb/erac194

Borghi, M., Perez de Souza, L., Tohge, T., Mi, J., Melandri, G., Proost, S., Martins, M., Al-Babili, S., Bouwmeester, H., Fernie, A. (2022). High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology, 190(1), 319-339. DOI :  10.1093/plphys/kiac253

Bourafai-Aziez, A., Jacob, D., Charpentier, G., Cassin, E., Rousselot, G., Moing, A., Deborde, C. (2022). Development, Validation, and Use of 1H-NMR Spectroscopy for Evaluating the Quality of Acerola-Based Food Supplements and Quantifying Ascorbic Acid. Molecules, 27(17), 5614. DOI :  10.3390/molecules27175614

Branchereau, C., Quero-Garcia, J., Echagüe, N. H. Z., Lambelin, L., Fouché, M., Wenden, B., Donkpegan, A., Le Dantec, L., Barreneche, T., Alletru, D., Parmentier, J.,  Dirlewanger, E. (2022). New insights into flowering date in Prunus : fine mapping of a major QTL in sweet cherry. Horticulture Research, 9, uhac042. DOI : 10.1093/hr/uhac042

Bres, C., Petit, J., Reynoud, N., Brocard, L., Lahaye, M., Marion, D., Bakan B., Rothan, C. (2022) The tomato SlSHINE2 transcription factor contributes to cuticle formation and controls epidermal patterning in tomato fruit. Molecular Horticulture, 2(14). DOI : 10.1186/s43897-022-00035-y

Campos, N. A., Colombié, S., Moing, A., Cassan, C., Amah, D., Swennen, R., Gibon, Y., Carpentier, S. C. (2022). From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown. Journal of experimental botany, erac187. 73 (14), 4832-4849. DOI : 10.1093/jxb/erac187

Castillo-Fraire, C., Mariana, Pottier, S., Bondon, A., Salas, E., Bernillon, S., Guyot, S., Poupard, P. (2022). NMR structural elucidation of dehydrodimers resulting from oxidation of 5-O-caffeoylquinic acid in an apple juice model solution. Food Chemistry, 372, 131117.  DOI : 10.1016/j.foodchem.2021.131117

Coudon, N., Navailles, L., Nallet, F., Ly, I., Bentaleb, A., Chapel, J.-P., Beven, L., Douliez, J.-P., Martin, N. (2022). Stabilization of all-aqueous droplets by interfacial self-assembly of fatty acids bilayers. Journal of Colloid and Interface Science, 617, 257-266. DOI : 10.1016/j.jcis.2022.02.138

Diouf, M. B., Gaspard, O., Marais, A., Filloux, D., Gomez, R.-M., Faure, C., Roumagnac, P., Candresse, T., Theil, S., Contreras, S., Teycheney, P.-Y., Umber, M. (2022). Molecular characterization of Cordyline virus 1 isolates infecting yam (Dioscorea spp). Archives of Virology, 167, 2275-2280. DOI : 10.1007/s00705-022-05535-2

Dussarrat, T., Prigent, S., Latorre, C., Bernillon, S., Flandin, A., Díaz, F., Cassan, C., Van Delft, P., Jacob, D., Varala, K., Joubès, J., Gibon, Y., Rolin, D., Gutiérrez, R., Pétriacq, P. (2022). Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience. New Phytologist, 234, 1614-1628. DOI : 10.1111/nph.18095

Fournier, P., Pellan, L., Barroso-Bergadàc, D., Bohan, D., Candresse, T., Delmotte, F., Dufour, M.C., Lauvergeat, V., Le Marrec, C., Marais, A., Martins, G., Masneuf-Pomarède, I., Rey, P., Sherman, D., This, P., Frioux, C., Labarthe, S., Vacher, C. (2022). The functional microbiome of grapevine throughout plant evolutionary history and lifetime. Advances in Ecological Research, 67, 27-99. DOI :  10.1016/bs.aecr.2022.09.001

Garbelotto, M., Rubino, L., Gonthier, P., Candresse, T., Coutinho, T. (2022). The Journal of Plant Pathology Editors’ Choice August 2022. Journal of Plant Pathology, 104(3), 901-902. DOI :  10.1007/s42161-022-01179-y

Garbelotto, M., Rubino, L., Candresse, T., Gonthier, P., Janse, J. (2022). The Journal of Plant Pathology Editors’ Choice February 2022. Journal of Plant Pathology, 104(1-2). DOI : 10.1007/s42161-022-01045-x

Garbelotto, M., Rubino, L., Gonthier, P., Candresse, T. (2022). The Journal of Plant Pathology Editors’ Choice November 2022. Journal of Plant Pathology, 104(4), 1281-1282. DOI :  10.1007/s42161-022-01268-y

Hall, R. D., D’Auria, J. C., Silva Ferreira, A. C., Gibon, Y., Kruszka, D., Mishra, P., van de Zedde, R. (2022). High-throughput plant phenotyping: a role for metabolomics? Trends in Plant Science, 27 (6), 549-563. DOI : 10.1016/j.tplants.2022.02.001

Ipoutcha, T., Gourgues, G., Lartigue, C., Blanchard, A., Sirand-Pugnet, P. (2022). Genome Engineering in Mycoplasma gallisepticum Using Exogenous Recombination Systems. ACS Synthetic Biology, 11, 1060-1067. DOI : 10.1021/acssynbio.1c00541

Ipoutcha, T., Rideau, F., Sirand-Pugnet, P., Gourgues, G., Arfi, Y., Lartigue, C., Blanchard, A. (2022). Genome Editing of Veterinary Relevant Mycoplasmas Using a CRISPR-Cas Base Editor System. Applied and Environmental Microbiology, 88(17), e00996-22. DOI : 10.1128/aem.00996-22

Kahli, H., Beven, L., Grauby-Heywang, C., Debez, N., Gammoudi, I., Morote, F., Sbartai, H., Cohen-Bouhacina, T. (2022). Impact of Growth Conditions on Pseudomonas fluorescens Morphology Characterized by Atomic Force Microscopy. International Journal of Molecular Sciences, 23(17), 9579. DOI :  10.3390/ijms23179579

Khalili, M., Candresse, T., Brans, Y., Faure, C., Audergon, J.-M., Decroocq, V., Roch, G., Marais, A. (2022). The Molecular Characterization of a New Prunus-Infecting Cheravirus and Complete Genome Sequence of Stocky Prune Virus. Viruses, 14(11), 2325. DOI :  10.3390/v14112325

Khanchezar, A., Izadpanah, K., Taghavi, M., Beven, L. (2022). Genetic diversity of strains of Spiroplasma citri isolated in southern Iran. European Journal of Plant Pathology, 163, 381-392.  DOI : 10.1007/s10658-022-02483-0

Krüger, E., Woznicki, TL., Heide, O.M., Kusnierek, K., Rivero, R., Masny, A., Sowik, I., Brauksiepe, B., Eimert K., Mott, D., Savini, G., Demene, M., Guy, K., Petit, A., Denoyes, B., Sønsteby, A. (2022). Flowering Phenology of Six Seasonal-Flowering Strawberry Cultivars in a Coordinated European Study. Horticulturae. 2022; 8(10):933. DOI :  10.3390/horticulturae8100933

Kuhn, J., H, Adkins, S., Alkhovsky, S., V, Avšič-Županc, T., Ayllón, M., A, Bahl, J., Balkema-Buschmann, A., Ballinger, M., J, Bandte, M., Beer, M., Bejerman, N., Bergeron, É., Biedenkopf, N., Bigarré, L., Blair, C., D, Blasdell, K., R, Bradfute, S., B, Briese, T., Brown, P., A, Bruggmann, R., Buchholz, U., J, Buchmeier, M., J, Bukreyev, A., Burt, F., Büttner, C., Calisher, C., H., Candresse, T., … Økland, A., L. (2022). 2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology, 167(12), 2857 - 2906. DOI : 10.1007/s00705-022-05546-z

Kwame Adrakey, H., Malembic-Maher, S., Rusch, A., Ay, J. S., Riley, L., Ramalanjaona, L., Fabre, F. (2022). Field and landscape risk factors impacting Flavescence doree infection : Insights from spatial Bayesian modelling in the Bordeaux vineyards. Phytopathology, 112,1686-1697. DOI : 10.1094/PHYTO-10-21-0449-R

Labadie, M., Vallin, G., Potier, A., Petit, A., Ring, L., Hoffmann, T., Gaston, A., Munoz-Blanco, J., Caballero, J., Schwab, W., Rothan, C., Denoyes, B. (2022). High Resolution Quantitative Trait Locus Mapping and Whole Genome Sequencing Enable the Design of an Anthocyanidin Reductase-Specific Homoeo-Allelic Marker for Fruit Colour Improvement in Octoploid Strawberry (Fragaria × ananassa). Frontiers in Plant Science, 13, 869655. DOI : 10.3389/fpls.2022.869655

Lafforgue, G., Michon, T., Charon, J. (2022). Analysis of the Contribution of Intrinsic Disorder in Shaping Potyvirus Genetic Diversity. Viruses, 14(9), 1959. DOI : 10.3390/v14091959

Lartigue, C., Lambert, B., Rideau, F., Dahan, Y., Decossas, M., Hillion, M., Douliez, J. P., Hardouin, J., Lambert, O., Blanchard, A., Beven, L. (2022). Cytoskeletal components can turn wall-less spherical bacteria into kinking helices. Nature communications, 13(1), 6930. DOI :  10.1038/s41467-022-34478-0

Lebas, B., Adams, I., Al Rwahnih, M., Baeyen, S., Bilodeau, G. J., Blouin, A., Boonham, N., Candresse, T., Chandelier, A., de Jonghe, K., Fox, A., Gaafar, Y., Gentit, P., Haegeman, A., Ho, W., Hurtado-Gonzales, O., Jonkers, W., Kreuze, J., Kutjnak, D., Landa, B., Liu, M., Maclot, F., Malapi-Wight, M., Maree, H., Martoni, F., Mehle, N., Minafra, A., Mollov, D., Moreira, A., Nakhla, M., Petter, F., Piper, A., Ponchart, J., Rae, R., Remenant, B., Rivera, Y., Rodoni, B., Roenhorst, J. W., Rollin, J., Saldarelli, P., Santala, J., Souza-Richards, R., Spadaro, D., Studholme, D., Sultmanis, S., van der Vlugt, R., Tamisier, L., Trontin, C., Vazquez-Iglesias, I., Vicente, C., Vossenberg, B., Wetzel, T., Ziebell, H., Massart, S. (2022). Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description. EPPO Bulletin, 52(2), 394-418. DOI :10.1111/epp.12863

Lemaire-Chamley, M., Koutouan, C., Jorly, J., Assali, J., Yoshida, T., Nogueira, M., Tohge, T., Ferrand, C., Peres, L., Asamizu, E., Ezura, H., Fraser, P., Hajirezaei, M.-R., Fernie, A., Rothan, C. (2022). A Chimeric TGA Repressor Slows Down Fruit Maturation and Ripening in Tomato. Plant and Cell Physiology, 63(1), 120–134. DOI : 10.1093/pcp/pcab150

López, M.-E., Roquis, D., Becker, C., Denoyes, B., Bucher, E. (2022). DNA methylation dynamics during stress response in woodland strawberry (Fragaria vesca ). Horticulture Research, 9, uhac174. DOI :  10.1093/hr/uhac174

Loupit, G., Fonayet, J. V., Prigent, S., Prodhomme, D., Spilmont, A. S., Hilbert, G., Franc, C., De Revel, G., Richard, T., Ollat, N., Cookson, S. J. (2022). Identifying early metabolite markers of successful graft union formation in grapevine. Horticulture research, 9, uhab070. DOI : 10.1093/hr/uhab070

Magliozzi, C., Artois, M., Bertaccini, A., Candresse, T., Tsiamis, K., D’amico, F., Deriu, I., Gervasini, E., Cardoso, A., Cristina. (2022). European primary datasets of alien bacteria and viruses. Scientific Data, 9(1), 403. DOI : 10.1038/s41597-022-01485-1

Martins, J., Pétriacq, P., Flandin, A., Gómez-Cadenas, A., Monteiro, P., Pinto, G., Canhoto, J. (2022). Genotype determines Arbutus unedo L. physiological and metabolomic responses to drought and recovery. Frontiers in plant science, 13, 1011542. DOI : 10.3389/fpls.2022.1011542

Massart, S., Adams, I., Al Rwahnih, M., Baeyen, S., Bilodeau, G.J., Blouin, A.G., Boonham, N., Candresse, T., Chandelier, A., de Jonghe, K., Fox, A., Gaafar, Y.Z.A., Gentit, P., Haegeman, A., Ho, W., Hurtado-Gonzales, O., Jonkers, W., Kreuze, J., Kutjnak, D., Landa, B., Liu, M., Maclot, F., Malapi-Wight, M., Maree, H., Martoni, F., Mehle, N., Minafra, A., Mollov, D., Moreira, A., Nakhla, M., Petter, F., Piper, A.M., Ponchart, J., Rae, R., Remenant, B., Rivera, Y., Rodoni, B., Botermans, M., Roenhorst, J.W., Rollin, J., Saldarelli, P., Santala, J., Souza-Richards, R., Spadaro, D., Studholme, D.J., Sultmanis, S., van der Vlugt, R., Tamisier, L., Trontin, C., Vazquez, I., Vicente, C.S.L., Vosseberg, B.T.L.H., Westenberg, M., Wetzel, T., Ziebell, H.  Lebas, B.S. (2022). Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests. Peer Community Journal, 2: e62. DOI :  10.24072/pcjournal.181

Massé, D., Filloux, D., Candresse, T., T., Massart, S., Marais, A., Verdin, E., Cassam, N., Fernandez, E., Roumagnac, P., Teycheney, P.-Y., Lefeuvre, P., Lett, J.-M. (2022). Identification of a novel vitivirus from pineapple in Reunion Island. Archives of Virology, 167, 2355-2357. DOI :  10.1007/s00705-022-05512-9

Mazorra Morales, L. M., Cosme Silva, G. M., Santana, D. B., Pireda, S., Dorighetto Cogo, A. J., Heringer, Â. S., de Oliveira, T. d. R., Reis, R., dos Santos Prado, L. A., de Oliveira, A. V., Silveira, V., da Cunha, M., Barros, C., Façanha, A., Baldet, P., Bartoli, C., da Silva, M. G., Oliveira, J. (2022). Mitochondrial dysfunction associated with ascorbate synthesis in plants. Plant Physiology and Biochemistry, 185, 55-68. DOI : 10.1016/j.plaphy.2022.05.025

Mollov, D., Filloux, D., Grinstead, S., Bolus, S., Claude, L., Fernandez, E., Julian, C., Candresse, T., Lockhart, B., Roumagnac, P., Rott, P. Daugrois, J.H. (2022). Sugarcane mild mosaic virus: The rediscovery of an identified but unrecognized virus. Plant Pathology, 72(2), 312-321. DOI : 10.1111/ppa.13654

Moubset, O., François, S., Maclot, F., Palanga, E., Julian, C., Claude, L., Fernandez, E., Rott, P., Daugrois, J. H., Antoine-Lorquin, A., Bernardo, P., Blouin, A. G., Temple, C., Kraberger, S., Fontenele, R. S., Harkins, G. W., Ma, Y., Marais, A., Candresse, T., Chéhida, S. B., … Roumagnac, P. (2022). Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses. Phytopathology, 112(11), 2253–2272. DOI : 10.1094/PHYTO-03-22-0096-RVW

Nägele, T., Gibon, Y., Le Hir, R. (2022). Plant sugar metabolism, transport and signalling in challenging environments. Physiologia Plantarum, 174(5). DOI : 10.1111/ppl.13768

Paiva, T., O, Schneider, A., N, Bataille, L., Chovin, A., Anne, A., Michon, T., Wege, C., Demaille, C. (2022). Enzymatic Activity of Individual Bioelectrocatalytic Viral Nanoparticles: Dependence of Catalysis on the Viral Scaffold and its Length. Nanoscale, 2022,14, 875-889. DOI : 10.1039/d1nr07445h

Parrilla, J., Medici, A., Gaillard, C., Verbeke, J., Gibon, Y., Rolin, D., Laloi, M., Finkelstein, R. R., Atanassova, R. (2022). Grape ASR Regulates Glucose Transport, Metabolism and Signaling. International journal of molecular sciences, 23(11), 6194. DOI : 10.3390/ijms23116194

Paulhe, N., Canlet, C., Damont, A., Peyriga, L., Durand, S., Deborde, C., Alves, S., Bernillon, S., Berton, T., Bir, R., Bouville, A., Cahoreau, E., Centeno, D., Costantino, R., Debrauwer, L., Delabrière, A., Duperier, C., Emery, S., Flandin, A., Hohenester, U., Jacob, D., Joly, C., Jousse, C., Lagree, M., Lamari, N., Lefebvre, M., Lopez-Piffet, C., Lyan, B., Maucourt, M., Migne, C., Olivier, M.F., Rathahao-Paris, E., Petriacq, P., Pinelli, J., Roch, L., Roger, P., Roques, S., Tabet, J.C., Tremblay-Franco, M., Traïkia, M., Warnet, A., Zhendre, V., Rolin, D., Jourdan, F., Thévenot, E., Moing, A., Jamin, E., Fenaille, F., Junot, C., Pujos-Guillot E, Giacomoni, F. (2022). PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management. Metabolomics, 18(6), 40. DOI : 10.1007/s11306-022-01899-3

Perro, A., Coudon, N., Chapel, J. P., Martin, N., Béven, L., Douliez, J. P. (2022). Building micro-capsules using water-in-water emulsion droplets as templates. Journal of colloid and interface science, 613, 681–696. DOI : 10.1016/j.jcis.2022.01.047

Poorter, H., Yin, X., Alyami, N., Gibon, Y., Pons, T.L. (2022). MetaPhenomics: quantifying the many ways plants respond to their abiotic environment, using light intensity as an example. Plant and Soil, 476, 421-424. DOI :  10.1007/s11104-022-05391-8

Poucet, T., Beauvoit, B., González-Moro, M. B., Cabasson, C., Pétriacq, P., Flandin, A., Gibon, Y., Marino, D., Dieuaide-Noubhani, M. (2022). Impaired cell growth in ammonium stress explained by modelling the energy cost of vacuole expansion in tomato leaves. The Plant journal : for cell and molecular biology, 112(4), 1014-1028. DOI : 10.1111/tpj.15991

Rehanek, M., Karlin, D. G., Bandte, M., Al Kubrusli, R., Nourinejhad Zarghani, S., Candresse, T., Büttner, C., von Bargen, S. (2022). The Complex World of Emaraviruses—Challenges, Insights and Prospects. Forests, 13(11), 1868. DOI :  10.3390/f13111868

Reynoud, N., Geneix, N., Petit, J., D'Orlando, A., Fanuel, M., Marion, D., Rothan, C., Lahaye, M., Bakan, B. (2022). The cutin polymer matrix undergoes a fine architectural tuning from early tomato fruit development to ripening. Plant physiology, 190(3), 1821–1840. DOI :  10.1093/plphys/kiac392

Rideau, F., Villa, A., Belzanne, P., Verdier, E., Hosy, E., Arfi, Y. (2022). Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas. Microbiology spectrum, 10(3), e0064522. DOI :  10.1128/spectrum.00645-22

Rocher, M., Simon, V., Jolivet, M.-D., Sofer, L., Deroubaix, A.-F., Germain, V., Mongrand, S., German-Retana, S. (2022). StREM1.3 REMORIN Protein Plays an Agonistic Role in Potyvirus Cell-to-Cell Movement in N. benthamiana. Viruses, 14(3), 574. DOI : 10.3390/v14030574

Roques, S., Deborde, C., Skiba-Cassy, S., Cala, O., Marchand, Y., Moing, A., Fauconneau, B. (2022). Critical assessment of metabolism and related growth and quality traits in trout fed spirulina-supplemented plant-based diets. Aquaculture, 553,738033. DOI : 10.1016/j.aquaculture.2022.738033

Ruiz-García, A. B., Olmos, A., Marais, A., Faure, C., Candresse, T. (2022). Natural Infection of Pomegranate (Punica Granatum) by Apple Dimple Fruit Viroid. Cells, 12(1), 49. DOI :  10.3390/cells12010049

Šafářová, D., Candresse, T., Navrátil, M. (2022). Complete genome sequence of a novel cytorhabdovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Archives of Virology, 167(7), 1589-1592. DOI : 10.1007/s00705-022-05444-4

Schönegger, D., Babalola, B. M., Marais, A., Faure, C., Candresse, T. (2022). Diversity of polerovirus‐associated RNAs in the virome of wild and cultivated carrots. Plant Pathology, 71(9), 1892-1900. DOI :  10.1111/ppa.13623

Schönegger, D., Marais, A., Faure, C., Candresse, T. (2022). A new flavi-like virus identified in populations of wild carrots. Archives of Virology, 167, 2407-2409. DOI : 10.1007/s00705-022-05544-1

Senger, E., Osorio, S., Olbricht, K., Shaw, P., Denoyes, B., Davik, J., Predieri, S., Karhu, S., Raubach, S., Lippi, N., Höfer, M., Cockerton, H., Pradal, C., Kafkas, E., Litthauer, S., Usadel, B., Mezzetti, B. (2022). Towards smart and sustainable development of modern berry cultivars in Europe. Plant journal, 111(5), 1238-1251. DOI : 10.1111/tpj.15876

Silva, J. M. F., Melo, F. L., Elena, S. F., Candresse, T., Sabanadzovic, S., Tzanetakis, I. E., Blouin, A. G., Villamor, D. E. V., Mollov, D., Constable, F., Cao, M., Saldarelli, P., Cho, W. K., Nagata, T. (2022). Virus classification based on in-depth sequence analyses and development of demarcation criteria using the Betaflexiviridae as a case study. The Journal of general virology, 103(11). DOI : 10.1099/jgv.0.001806

Steelheart, C., Alegre, M., Baldet, P., Rothan, C., Bres, C., Just, D., Okabe, Y., Ezura, H., Ganganelli, I., Gergoff Grozeff, G., Bartoli, C. (2022). High light stress induces H2O2 production and accelerates fruit ripening in tomato. Plant Science, 322, 111348. DOI : 10.1016/j.plantsci.2022.111348

Sukhorukov, G., Khalili, M., Gascuel, O., Candresse, T., Marais, A., Nikolski, M. (2022). VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data. Frontiers in Bioinformatics, 2, 867111. DOI : 10.3389/fbinf.2022.867111

Svanella-Dumas, L., Candresse, T., Lefebvre, M., Lluch, J., Valiere, S., Larignon, P., Marais, A. (2022). First report of grapevine virus L infecting grapevine in southeast France. Plant Disease, 106 (5), 1536. DOI : 10.1094/pdis-10-21-2310-pdn

Swinnen, G., Mauxion, J.-P., Baekelandt, A., De Clercq, R., Van Doorsselaere, J., Inzé, D., Gonzalez, N., Goossens, A., Pauwels, L. (2022). SlKIX8 and SlKIX9 are negative regulators of leaf and fruit growth in tomato. Plant Physiology, 188(1), 382-396. DOI : 10.1093/plphys/kiab464

Talenton, V., Baby, V., Gourgues, G., Mouden, C., Claverol, S., Vashee, S., Blanchard, A., Labroussaa, F., Jores, J., Arfi, Y., Sirand-Pugnet, P., Lartigue, C. (2022). Genome Engineering of the Fast-Growing Mycoplasma feriruminatoris toward a Live Vaccine Chassis. ACS synthetic biology, 11 (5), 1919-1930. DOI : 10.1021/acssynbio.2c00062

Tayeh, C., Mannino, M. R., Mosbach‐Schulz, O., Stancanelli, G., Tramontini, S., Gachet, E., Candresse, T., Jaques Miret, J. A., Jeger, M. J. (2022). Proposal of a ranking methodology for plant threats in the EU. EFSA Journal, 20(1), e07025. DOI : 10.2903/j.efsa.2022.7025

Toor, R., Hourdin, L., Shanmugathasan, S., Lefrançois, P., Arbault, S., Lapeyre, V., Bouffier, L., Douliez, J.-P., Ravaine, V., Perrot, A. (2022). Enzymatic cascade reaction in simple-coacervates. Journal of Colloid and Interface Science, 629, 46-54. DOI : 10.1016/j.jcis.2022.09.019

Umber, M., Filloux, D., Svanella-Dumas, L., Bonheur, L., Acina-Mambole, I., Gomez, R. M., Faure, C., Anzala, F., Pavis, C., Roumagnac, P., Marais, A., Theil, S., Candresse, T., Teycheney, P. Y. (2022). Host range and molecular variability of the sadwavirus dioscorea mosaic associated virus. Archives of virology, 167, 917-922. DOI : 10.1007/s00705-022-05379-w

Urano, K., Maruyama, K., Koyama, T., Gonzalez, N., Inzé, D., Yamaguchi-Shinozaki, K., Shinozaki, K. (2022). CIN-like TCP13 is essential for plant growth regulation under dehydration stress. Plant Molecular Biology, 108(3), 257-275. DOI : 10.1007/s11103-022-01251-2

Urano, K., Maruyama, K., Koyama, T., Gonzalez, N., Inzé, D., Yamaguchi-Shinozaki, K., Shinozaki, K. (2022). Correction to: CIN‑like TCP13 is essential for plant growth regulation under dehydration stress. Plant Molecular Biology, 108(6), 635-635. DOI : 10.1007/s11103-022-01251-2

Vaitkevičiūtė, G., Aleliūnas, A., Gibon, Y., Armonienė, R. (2022). The effect of cold acclimation, deacclimation and reacclimation on metabolite profiles and freezing tolerance in winter wheat. Frontiers in Plant Science, 13, 959118. DOI :10.3389/fpls.2022.959118

Vaitkevičiūtė, G., Aleliūnas, A., Gibon, Y., Armonienė, R. (2022). Comparative Analysis of Antioxidant Accumulation under Cold Acclimation, Deacclimation and Reacclimation in Winter Wheat. Plants (Basel, Switzerland), 11(21), 2818. DOI : 10.3390/plants11212818

Vismans, G., van Bentum, S., Spooren, J., Song, Y., Goossens, P., Valls, J., Snoek, B. L., Thiombiano, B., Schilder, M., Dong, L., Bouwmeester, H. J., Pétriacq, P., Pieterse, C. M. J., Bakker, P. A. H. M., Berendsen, R. L. (2022). Coumarin biosynthesis genes are required after foliar pathogen infection for the creation of a microbial soil-borne legacy that primes plants for SA-dependent defenses. Scientific reports, 12(1), 22473. DOI : 10.1038/s41598-022-26551-x

2021

Allwood, J. W., Williams, A., Uthe, H., van Dam, N., M, Mur, L., A J, Grant, M., R, Pétriacq, P. (2021). Unravelling Plant Responses to Stress—The Importance of Targeted and Untargeted Metabolomics. Metabolites, 11(8), 558. DOI : 10.3390/metabo11080558

Ancín, M., Larraya, L., Florez-Sarasa, I., Bénard, C., Fernández-San Millán, A., Veramendi, J., Gibon, Y., Fernie, A. R., Aranjuelo, I., Farran, I. (2021). Thioredoxin m overexpression in chloroplasts alters carbon and nitrogen partitioning in tobacco plants. Journal of experimental botany, 72 (13), 4949-4964. DOI : 10.1093/jxb/erab193

Arfi, Y., Lartigue, C., Sirand-Pugnet, P., Blanchard, A. (2021). Beware of Mycoplasma Anti-immunoglobulin Strategies. mBio, 12(6), e01974-01921. DOI : 10.1128/mBio.01974-21

Arricau-Bouvery, N., Duret, S., Dubrana, M. P., Desqué, D., Eveillard, S., Brocard, L., Malembic-Maher, S., Foissac, X. (2021). Interactions between the flavescence dorée phytoplasma and its insect vector indicate lectin-type adhesion mediated by the adhesin VmpA. Scientific reports, 11(1), 11222. DOI : 10.1038/s41598-021-90809-z

Barreneche, T., Cárcamo de la Concepción, M., Blouin-Delmas, M., Ordidge, M., Nybom, H., Lacis, G., Feldmane, D., Sedlak, J., Meland, M., Kaldmäe, H., Kahu, K., Békefi, Z., Stanivuković, S., Đurić, G., Höfer, M., Galik, M., Schüller, E., Spornberger, A., Sirbu, S., Drogoudi, P., Agulheiro-Santos, A. C., Kodad, O., Vokurka, A., Lateur, M., Fernández Fernández, F., Giovannini, D., Quero-Garcia, J. (2021). SSR-Based Analysis of Genetic Diversity and Structure of Sweet Cherry (Prunus avium L.) from 19 Countries in Europe. Plants, 10, 1983. DOI : 10.3390/plants10101983

Beauchet, A., Gévaudant, F., Gonzalez, N., Chevalier, C. (2021). In search of the still unknown function of FW2.2 / CELL NUMBER REGULATOR, a major regulator of fruit size in tomato. Journal of Experimental Botany, 72(15), 5300-5311. DOI : 10.1093/jxb/erab207/6273779

Bento, A., Moreira, C. J. S., Correia, V. G., Escórcio, R., Rodrigues, R., Tomé, A. S., Geneix, N., Petit, J., J., Bakan, B., Rothan, C., Mykhaylyk, O. O., Silva Pereira, C. (2021). Quantification of Structure–Property Relationships for Plant Polyesters Reveals Suberin and Cutin Idiosyncrasies. ACS Sustainable Chemistry & Engineering, 9: 15780−15792. DOI : 10.1021/acssuschemeng.1c04733

Bernard, A., Crabier, J., Donkpegan, A.S.L., Marrano, A., Lheureux, F. Dirlewanger, E. (2021) Genome-Wide Association Study Reveals Candidate Genes Involved in Fruit Trait Variation in Persian Walnut (Juglans regia L.). Frontiers in Plant Science, 11:607213. DOI : 10.3389/fpls.2020.607213

Berton, T., Bernillon, S., Fernandez, O., Duruflé, H., S, Flandin, A., Cassan, C., Jacob, D., Langlade, N., B, Gibon, Y., Moing, A. (2021). Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit. OCL Oilseeds and fats crops and lipids, 28, 6 p. DOI : 10.1051/ocl/2021029

Bortolami, G., Gambetta, G., Cassan, C., Dayer, S., Farolfi, E., Ferrer, N., Gibon, Y., Jolivet, J., Lecomte, P., Delmas, C. E. L. (2021). Grapevines under drought do not express esca leaf symptoms. Proceedings of the National Academy of Sciences of the United States of America, 118(43), e2112825118. DOI : 10.1073/pnas.2112825118

Burgos, E., De Luca, M. B., Diouf, I., de Haro, L. A., Albert, E., Sauvage, C., Jian Tao, Z., Bermudez, L., Asís, R., Nunes Nesi, A., Matringe, M., Brehelin, C., Guiraud, T., Ferrand, C., Atienza, I., Jorly, J., Mauxion, J. P., Baldet, P., Fernie, A.R., Quadrana, L., Rothan, C., Causse, M., Carrari, F. (2021). Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato. The Plant journal 105(4), 907-923. DOI : 10.1111/tpj.15077

Calle, A., Grimplet, J., Le Dantec, L., Wünsch, A. (2021). Identification and Characterization of DAMs Mutations Associated With Early Blooming in Sweet Cherry, and Validation of DNA-Based Markers for Selection. Frontiers in Plant Science, 12, 621491. DOI : 10.3389/fpls.2021.621491

Canales, C., Morán, F., Candresse, T., Olmos, A., Ruiz-García, A. B. (2021). First report of Passiflora edulis symptomless virus in pomegranate in Spain. Journal of Plant Pathology, 103, 1375. DOI : 10.1007/s42161-021-00940-z

Chen, J., Beauvoit, B., Génard, M., Colombié, S., Moing, A., Vercambre, G., Gomès, E., Gibon, Y., Dai, Z. (2021, 2021). Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development. New Phytologist, 230, 1489-1502. DOI : 10.1111/nph.17260

Chen, R., Droux, M., Goyer, A., Hirel, B., Hodges, M., Issakidis-Bourguet, E., Jacquot, J.-P., De Lamotte, F., Lemaire, S., Lemaire-Chamley, M., Miginiac-Maslow, M., Sugiyama, T., Suzuki, A., Vidal, J. (2021). Scientific contributions of Pierre Gadal and his lab—A tribute to Pierre Gadal (1938–2019). In Advances in Botanical Research.100, 41-127. DOI : 10.1016/bs.abr.2021.01.012

Chiumenti, M., Navarro, B., Candresse, T., Flores, R., di Serio, F. (2021). Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices. Virus evolution, 7(1), veab001. DOI : 10.1093/ve/veab001

Covarrubias, M. P., Lillo-Carmona, V., Melet, L., Benedetto, G., Andrade, D., Maucourt, M., Deborde, C., Fuentealba, C., Moing, A., Valenzuela, M. L., Pedreschi, R., Almeida Miyasaka, A. (2021). Metabolite Fruit Profile Is Altered in Response to Source–Sink Imbalance and Can Be Used as an Early Predictor of Fruit Quality in Nectarine. Frontiers in Plant Science, 11: 604133. DOI: 10.3389/fpls.2020.604133

Deborde, C., Hounoum, B., Moing, A., Maucourt, M., Jacob, D., Corraze, G., Médale, F., Fauconneau, B. (2021). Putative imbalanced amino acid metabolism in rainbow trout long term fed a plant-based diet as revealed by 1H-NMR metabolomics. Journal of Nutritional Science, 10, E13. DOI : 10.1017/jns.2021.3

Deslous, P., Bournonville, C., Decros, G., Okabe, Y., Mauxion, J. P., Jorly, J., Gadin, S., Brès, C., Mori, K., Ferrand, C., Prigent, S., Ariizumi, T., Ezura, H., Hernould, M., Rothan, C., Pétriacq, P., Gibon, Y.,  Baldet, P. (2021). Overproduction of ascorbic acid impairs pollen fertility in tomato. Journal of experimental botany, 72(8), 3091-3107. DOI :10.1093/jxb/erab040

Destailleur, A., Poucet, T., Cabasson, C., Alonso, A. P., Cocuron, J.-C., Larbat, R., Vercambre, G., Colombié, S., Pétriacq, P., Andrieu, M. H., Beauvoit, B., Gibon, Y., Dieuaide-Noubhani, M. (2021). The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole. Metabolites, 11(12), 848. DOI : 10.3390/metabo11120848

Dittmer, J., Lusseau, T., Foissac, X., & Faoro, F. (2021). Skipping the Insect Vector: Plant Stolon Transmission of the Phytopathogen 'Ca. Phlomobacter fragariae' from the Arsenophonus Clade of Insect Endosymbionts. Insects, 12(2), 93. DOI : 10.3390/insects12020093

Dussarrat, T., Decros, G., P, F., Gibon, Y., Latorre, C., Rolin, D., Gutierrez, R. A., Pétriacq, P. (2021). Another Tale from the Harsh World: How Plants Adapt to Extreme Environments. Annual Plant Reviews Online, 4(2), 551-603. DOI : 10.1002/9781119312994.apr0758

Garbelotto, M., Gonthier, P., Janse, J., Candresse, T., Rubino, L. (2021). The Journal of Plant Pathology Editors’ Choice May 2021. Journal of Plant Pathology, 103(2), 407-408. DOI : 10.1007/s42161-021-00849-7

Garcion, C., Beven, L., Foissac, X. (2021, 2021-03-25). Comparison of Current Methods for Signal Peptide Prediction in Phytoplasmas. Frontiers in Microbiology, 12, 661524. DOI : 10.3389/fmicb.2021.661524

Gaston, A., Potier, A., Alonso, M., Sabbadini, S., Delmas, F., Tenreira, T., Cochetel, N., Labadie, M., Prévost, P., Folta, K. M., Mezzetti, B., Hernould, M., Rothan, C.,  Denoyes, B. (2021). The FveFT2 florigen/FveTFL1 antiflorigen balance is critical for the control of seasonal flowering in strawberry while FveFT3 modulates axillary meristem fate and yield. The New phytologist, 232(1), 372-387. DOI : 10.1111/nph.17557

Gerlin, L., Escourrou, A., Cassan, C., Maviane Macia, F., Peeters, N., Genin, S., Baroukh, C. (2021). Unravelling physiological signatures of tomato bacterial wilt and xylem metabolites exploited by Ralstonia solanacearum. Environmental microbiology, 23(10), 5962-5978. DOI : 10.1111/1462-2920.15535

Glasa, M., Hančinský, R., Šoltys, K., Predajňa, L., Tomašechová, J., Hauptvogel, P., Mrkvová, M., Mihálik, D. Candresse, T. (2021). Molecular Characterization of Potato Virus Y (PVY) Using High-Throughput Sequencing: Constraints on Full Genome Reconstructions Imposed by Mixed Infection Involving Recombinant PVY Strains. Plants, 10(4), 753. DOI : 10.3390/plants10040753

Gouguet, P., Gronnier, J., Legrand, A., Perraki, A., Jolivet, M. D., Deroubaix, A. F., German-Retana, S., Boudsocq, M., Habenstein, B., Mongrand, S., Germain, V. (2021). Connecting the dots: from nanodomains to physiological functions of REMORINs. Plant physiology, 185(3), 632–649. DOI :  10.1093/plphys/kiaa063

Groppi, A., Liu, S., Cornille, A., Decroocq, S., Bui, Q. T., Tricon, D., Cruaud, C., Arribat, S., Belser, C., Marande, W., Salse, J., Huneau, C., Rodde, N., Rhalloussi, W., Cauet, S., Istace, B., Denis, E., Carrère, S., Audergon, J. M., Roch, G., … Decroocq, V. (2021). Population genomics of apricots unravels domestication history and adaptive events. Nature communications, 12(1), 3956. DOI : 10.1038/s41467-021-24283-6

Ishikawa, Y., Cassan, C., Kadeer, A., Yuasa, K., Sato, N., Sonoike, K., Kaneko, Y., Miyagi, A., Takahashi, H., Ishikawa, T., Yamaguchi, M., Nishiyama, Y., Hihara, Y., Gibon, Y., Kawai-Yamada, M. (2021). The NAD kinase Slr0400 functions as a growth repressor in Synechocystis sp. PCC 6803. Plant & Cell Physiology, 62(4), 668-677. DOI : 10.1093/pcp/pcab023

Krüger, E. Will, F., Kumar, K., Celejewska, K., Chartier, P., Masny, A., Mott D, Petit, A., Savini, G., Sønsteby, A. (2021). Influence of Post-Flowering Climate Conditions on Anthocyanin Profile of Strawberry Cultivars Grown from North to South Europe. Applied Sciences, 11(3) : 1326. DOI : 10.3390/app11031326

Kutnjak, D., Tamisier, L., Adams, I., Boonham, N., Candresse, T., Chiumenti, M., De Jonghe, K., Kreuze, J. F., Lefebvre, M., Silva, G., Malapi-Wight, M., Margaria, P., Mavric Plesco, I., McGreig, S., Miozzi, L., Remenant, B., Reynard, J. S., Rollin, J., Rott, M., Schumpp, O., Massart, S., Haegeman, A. (2021). A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses. Microorganisms, 9(4), 841. DOI : 10.3390/microorganisms9040841

Kwibuka, Y., Bisimwa, E., Blouin, A., G, Bragard, C., Candresse, T., Faure, C., Filloux, D., Lett, J.-M., Maclot, F., Marais, A., Ravelomanantsoa, S., Shakir, S., Vanderschuren, H., Massart, S. (2021). Novel Ampeloviruses Infecting Cassava in Central Africa and the South-West Indian Ocean Islands. Viruses, 13(6), 1030. DOI : 10.3390/v13061030

Lacrampe, N., Lopez-Lauri, F., Lugan, R., Colombié, S., Olivares, J., Nicot, P., Lecompte, F. (2021). Regulation of sugar metabolism genes in the N-dependent susceptibility of tomato stems to Botrytis cinerea. Annals of Botany, 127 (1), 143-154. DOI : 10.1093/aob/mcaa155

Lahaye, M., Tabi, W., Le Bot, L., Delaire, M., Orsel, M., Campoy, J. A., Quero-Garcia, J., Le Gall, S. (2021). Comparison of cell wall chemical evolution during the development of fruits of two contrasting quality from two members of the Rosaceae family: Apple and sweet cherry. Plant Physiology and Biochemistry, 168, 93-104. DOI : 10.1016/j.plaphy.2021.10.002

Larue, C., Barreneche, T., Petit, R., J. (2021). An intensive study plot to investigate chestnut tree reproduction. Annals of Forest Science, 78(4), 90. DOI : 10.1007/s13595-021-01104-w

Larue, C., Barreneche, T., Petit, R.J. (2021). Efficient monitoring of phenology in chestnuts. Scientia Horticulturae, 281, 109958. DOI : 10.1016/j.scienta.2021.109958

Larue, C., Guichoux, E., Laurent, B., Barreneche, T., Robin, C., Massot, M., Delcamp, A., J. Petit, R. (2021). Development of highly validated SNP markers for genetic analyses of chestnut species. Conservation Genetics Resources, 13, 383-388. DOI : 10.1007/s12686-021-01220-9

Le Bihan, Z., Hastoy, C., Cosson, P., Boutié, P., Rolin, D., Schurdi-Levraud, V. (2021). To cut or not to cut? That is the question in first year harvest of Stevia rebaudiana Bertoni production. Industrial Crops and Products, 162, 113209. DOI : 10.1016/j.indcrop.2020.113209

Lefebvre, M., Gaignard, A., Folschette, M., Bourdon, J.,  Guziolowski, C. (2021). Large-scale regulatory and signaling network assembly through linked open data. Database - The journal of Biological Databases and Curation, baaa113. DOI : 10.1093/database/baaa113

Liu, S., Decroocq, S., Harte, E., Tricon, D., Chague, A., Balakishiyeva, G., Kostritsyna, T., Turdiev, T., Saux, M.F.-L., Dallot, S., Giraud, T., E, Decroocq, V. (2021). Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section. Tree Genetics & Genomes 17, 2. DOI : 10.1007/s11295-020-01484-6

Ma, Y., Fort, T., Marais, A., Lefebvre, M., Theil, S., Vacher, C., Candresse, T. (2021, 2021). Leaf‐associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Plant-Environment Interactions, 2, 87-99. DOI : 10.1002/pei3.10043

Ma, Y., Svanella-Dumas, L., Julian, C., Galzi, S., Fernandez, E., Yvon, M., Pirolles, E., Lefebvre, M., Filloux, D., Roumagnac, P., Candresse, T. (2021). Genome characterization and diversity of trifolium virus 1 : identification of a novel legume-infecting capulavirus. Archives of Virology, 166(9), 2573-2578. DOI : 10.1007/s00705-021-05135-6

Maclot, F., Candresse, T., Filloux, D., Rott, P., Malmstrom, C., van der Vlugt, R., Massart, S., Roumagnac, P. (2021). De la paire de bottes à la paire de bases : de l’intérêt d’étudier l’écologie des viromes de plantes. Virologie, 25(1), 29-42. DOI : 10.1684/vir.2021.0879

Marais, A., Faure, C., Comont, G., Candresse, T., Stempien, E., & Corio-Costet, M.-F. (2021). Characterization of the Mycovirome of the Phytopathogenic Fungus, Neofusicoccum parvum. Viruses, 13(3), 375. DOI: 10.3390/v13030375

Marais, A., Murolo, S., Faure, C., Brans, Y., Larue, C., Maclot, F., Massart, S., Chiumenti, M., Minafra, A., Romanazzi, G., Lefebvre, M., Barreneche, T., Robin, C., Petit, R., Candresse, T. (2021). Sixty years from the first disease description, a novel badnavirus associated with chestnut mosaic disease. Phytopathology, 111(6), 1051-1058. DOI : 10.1094/phyto-09-20-0420-r

Marco, F., Batailler, B., Thorpe, M. R., Razan, F., Le Hir, R., Vilaine, F., Bouchereau, A., Martin-Magniette, M. L., Eveillard, S., Dinant, S. (2021). Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants. International journal of molecular sciences, 22(2), 745. DOI : 10.3390/ijms22020745

Martin, N., Douliez, J. P. (2021). Fatty Acid Vesicles and Coacervates as Model Prebiotic Protocells. ChemSystemsChem, 3, e2100024. DOI : 10.1002/syst.202100024

Mathioudakis, M., M, Maliogka, V., I, Candresse, T., Nickel, O., Fajardo, T. V. M., Budzyńska, D., Hasiów-Jaroszewska, B., Katis, N., I. (2021). Molecular Characterization of the Coat Protein Gene of Greek Apple Stem Pitting Virus Isolates: Evolution through Deletions, Insertions, and Recombination Events. Plants, 10(5), 917. DOI : 10.3390/plants10050917

Mauxion, J.-P., Chevalier, C., Gonzalez, N. (2021). Complex cellular and molecular events determining fruit size. Trends in Plant Science, 26(10), 1023-1038. DOI : 10.1016/j.tplants.2021.05.008

Meguerditchian, C., Ergun, A., Decroocq, V., Lefebvre, M., Bui, Q.-T. (2021). Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome. Peer Community Journal, 1, e48. DOI : 10.24072/pcjournal.57

Monnot, S., Desaint, H., Mary-Huard, T., Moreau, L., Schurdi-Levraud, V., Boissot, N. (2021, 2021-11). Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances. Cells, 10(11), 3080. DOI : 10.3390/cells10113080

Mori, K., Lemaire-Chamley, M., Jorly, J., Carrari, F., Conte, M., Asamizu, E., Mizoguchi, T., Ezura, H., Rothan, C. (2021). The conserved brassinosteroid-related transcription factor BIM1a negatively regulates fruit growth in tomato. Journal of Experimental Botany, 72(4), 1181-1197. DOI : 10.1093/jxb/eraa495

Nottelet, P., Bataille, L., Gourgues, G., Anger, R., Lartigue, C., Sirand-Pugnet, P., Marza, E., Fronzes, R., & Arfi, Y. (2021). The mycoplasma surface proteins MIB and MIP promote the dissociation of the antibody-antigen interaction. Science advances, 7(10), eabf2403. DOI :  10.1126/sciadv.abf2403

Nourinejhad Zarghani, S., Khalili, M., Dizadji, A., Wetzel, T. (2021). First report of grapevine red globe virus in grapevine in Iran. Journal of Plant Pathology, 103(2), 661-661. DOI : 10.1007/s42161-021-00749-w

Pagés, G., Deborde, C., Lemaire-Chamley, M., Moing, A., Bonny, J. M. (2021). MRSI vs CEST MRI to understand tomato metabolism in ripening fruit: is there a better contrast?. Analytical and bioanalytical chemistry, 413, 1251-1257. DOI :  10.1007/s00216-020-03101-w

Parrella, G., Troiano, E., Faure, C., Marais, A., Candresse, T. (2021). First Report of Alfalfa mosaic virus in Chayote in Italy. Plant disease, 105(3), 698. DOI : 10.1094/PDIS-10-20-2117-PDN

Petit, J., Bres, C., Reynoud, N., Lahaye, M., Marion, D., Bakan, B., Rothan, C. (2021) Unraveling Cuticle Formation, Structure, and Properties by Using Tomato Genetic Diversity. Front. Plant Sci. 12:778131. DOI: 10.3389/fpls.2021.778131

Poucet, T., González-Moro, M. B., Cabasson, C., Beauvoit, B., Gibon, Y., Dieuaide-Noubhani, M.,  Marino, D. (2021). Ammonium supply induces differential metabolic adaptative responses in tomato according to leaf phenological stage. Journal of Experimental Botany, 72(8), 3185-3199. DOI : 10.1093/jxb/erab057

Quero-García, J., Letourmy, P., Campoy, J. A., Branchereau, C., Malchev, S., Barreneche, T., Dirlewanger, E. (2021). Multi-year analyses on three populations reveal the first stable QTLs for tolerance to rain-induced fruit cracking in sweet cherry (Prunus avium L.). Horticulture research, 8(1), 136. DOI : 10.1038/s41438-021-00571-6

Rasouli, D., Werbrouck, S., Maleki, B., Jafary, H., Schurdi-Levraud, V. (2021). Elicitor-induced in vitro shoot multiplication and steviol glycosides production in Stevia rebaudiana. South African Journal of Botany, 137, 265-271. DOI : 10.1016/j.sajb.2020.10.023

Ravelonandro, M., Briard, P., Scorza, R., Callahan, A., Zagrai, I., Kundu, J. K., Dardick, C. (2021). Robust Response to Plum pox virus Infection via Plant Biotechnology. Genes, 12(6), 816. DOI : 10.3390/genes12060816

Reynoud, N., Petit, J., J., Bres, C., Lahaye, M., Rothan, C., Marion, D., Bakan, B. (2021). The Complex Architecture of Plant Cuticles and Its Relation to Multiple Biological Functions. Frontiers in Plant Science, 12, 782773. DOI : 10.3389/fpls.2021.782773

Rubio, B., Fernandez, O., Cosson, P., Berton, T., Caballero, M., Lion, R., Roux, F., Bergelson, J., Gibon, Y., Schurdi-Levraud, V. (2021). Metabolic Profile Discriminates and Predicts Arabidopsis Susceptibility to Virus under Field Conditions. Metabolites, 11(4), 230. DOI : 10.3390/metabo11040230

Rumbou., A., Candresse, T., von Bargen S., Büttner, C. (2021). Next-Generation Sequencing Reveals a Novel Emaravirus in Diseased Maple Trees From a German Urban Forest. Frontiers in Microbiology, 11:621179. DOI: 10.3389/fmicb.2020.621179

Schneider, M., Gonzalez, N., Pauwels, L., Inzé, D., Baekelandt, A. (2021). The PEAPOD Pathway and Its Potential To Improve Crop Yield. Trends in plant science, 26(3), 220–236. DOI : 10.1016/j.tplants.2020.10.012

Stam, R., Gladieux, P., Vinatzer, B. A., Goss, E. M., Potnis, N., Candresse, T., Brewer, M. T. (2021). Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology. Phytopathology, 111(1), 8–11. DOI : 10.1094/PHYTO-11-20-0528-FI

Stuani, L., Sabatier, M., Saland, E., Cognet, G., Poupin, N., Bosc, C., Castelli, F., Gales, L., Turtoi, E., Montersino, C., Farge, T., Boet, E., Broin, N., Larrue, C., Baran, N., Cissé, M., Conti, M., Loric, S., Kaoma, T., Hucteau, A., Zavoriti, A., Sahal, A., Mouchel, P.-L., Gotanègre, M., Cassan, C., Fernando, L., Wang, F., Hosseini, M., Chu-Van, E., Le Cam, L., Carroll, M., Selak, M., Vey, N., Castellano, R., Fenaille, F., Turtoi, A., Cazals, G., Bories, P., Gibon, Y., Nicolay, B., Ronseaux, S., Marszalek, J., Takahashi, K., DiNardo, C., Konopleva, M., Pancaldi, V., Collette, Y., Bellvert, F., Jourdan, F., Linares, L., Récher, C., Portais, J.-C., Sarry, J.-E. (2021). Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia. Journal of Experimental Medicine, 218(5). DOI : 10.1084/jem.20200924

Svanella-Dumas, L., Marais, A., Faure, C., Lefebvre, M., Gaudin, J., Candresse, T. (2020). First report of lettuce necrotic leaf curl virus infecting cultivated lettuce in France. Plant disease, 105(4), 1233.  DOI : 10.1094/PDIS-11-20-2348-PDN

Takei, H., Shinozaki, Y., Yano, R., Kashojiya, S., Hernould, M., Chevalier, C., Ezura, H., Ariizumi, T. (2021). Corrigendum: Loss-of-Function of a Tomato Receptor-Like Kinase Impairs Male Fertility and Induces Parthenocarpic Fruit Set. Frontiers in plant science, 12, 672086. DOI : 10.3389/fpls.2021.672086

Tamisier, L., Haegeman, A., Foucart, Y., Fouillien, N., Al Rwahnih, M., Buzkan, N., Candresse, T., Chiumenti, M., De Jonghe, K., Lefebvre, M., Margaria, P., Reynard, J.-S., Stevens, K., Kutnjak, D., Massart, S. (2021) Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection. Zenodo, 4273791, version 4 peer-reviewed and recommended by Peer community in Genomics. DOI : 10.5281/zenodo.4273791

Urrutia, M., Blein-Nicolas, M., Prigent, S., Bernillon, S., Deborde, C., Balliau, T., Maucourt, M., Jacob, D., Ballias, P., Bénard, C., Sellier, H., Gibon, Y., Giauffret, C., Zivy, M., Moing, A. (2021). Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis. Plant, Cell and Environment, 44(5), 1504-1521. DOI : 10.1111/pce.13993

Yu, X., Martin, P. G. P., Zhang, Y., Trinidad, J., Xu, F., Huang, J., Thum, K., Li, K., Zhao, S., Gu, Y., Wang, X., Michaels, S. (2021). The BORDER family of negative transcription elongation factors regulates flowering time in Arabidopsis. Current Biology - CB, 31, 1-8. DOI : 10.1016/j.cub.2021.09.074

2020

Alaguero-Cordovilla, A., Gran-Gómez, F. J., Jadczak, P., Mhimdi, M., Ibáñez, S., Bres, C., Just, D., Pérez-Pérez, J. M., Rothan, C. (2020). A quick protocol for the identification and characterization of early growth mutants in tomato. Plant Science, 301: 110673. DOI : 10.1016/j.plantsci.2020.110673

Alegre, M. L., Steelheart, C., Baldet, P., Rothan, C., Just, D., Okabe, Y., Ezura, H., Smirnoff, N., Gergoff Grozeff, GE., Bartoli, CG. (2020). Deficiency of GDP-L-galactose phosphorylase, an enzyme required for ascorbic acid synthesis, reduces tomato fruit yield. Planta, 251 (2), 54. DOI : 10.1007/s00425-020-03345-x

Belouah, I., Benard, C., Denton, A., Blein-Nicolas, M., Balliau, T., Teyssier, E., Gallusci, P., Bouchez, O., Usadel, B., Zivy, M., Gibon, Y., Colombie, S. (2020). Transcriptomic and proteomic data in developing tomato fruit. Data in Brief, 28, 105015. DOI : 10.1016/j.dib.2019.105015

Berger, A., Boscari, A., Horta Araújo, N., Maucourt, M., Hanchi, M., Bernillon, S., Rolin, D., Puppo, A.,  Brouquisse, R. (2020). Plant Nitrate Reductases Regulate Nitric Oxide Production and Nitrogen-Fixing Metabolism During the Medicago truncatula-Sinorhizobium meliloti Symbiosis. Frontiers in plant science, 11, 1313. DOI : 10.3389/fpls.2020.01313

Bernard, A., Barreneche, T., Donkpegan, A., Lheureux, F., Dirlewanger, E. (2020). Comparison of structure analyses and core collections for the management of walnut genetic resources. Tree Genetics and Genomes 16(5) : 76. DOI : 10.1007/s11295-020-01469-5

Bernard, A., Hamdy, S., Le Corre, L., E. Dirlewanger, E. Lheureux, F. (2020). 3D characterization of walnut morphological traits using X-ray computed tomography. Plant Methods, 16, 115. DOI : 10.1186/s13007-020-00657-7

Bernard, A., Marrano, A., Donkpegan, A., Brown, P. J., Leslie, C. A., Neale, Lheureux, F., Dirlewanger, E. (2020). Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.). BMC Genomics, 21 (1), 203. DOI : 10.1186/s12864-020-6616-y

Bonnot, T., Martre, P., Hatte, V., Dardevet, M., Leroy, P., Bénard, C., Falagan, N., Martin-Magniette, M.L., Deborde, C., Moing, A., Gibon, Y., Pailloux, M., Bancel, E., Ravel, C. 2020). Omics Data Reveal Putative Regulators of Einkorn Grain Protein Composition under Sulphur deficiency. Plant Physiology, 183 (2), 501-516, DOI:  10.1104/pp.19.00842

Cabral, D., Banora, M. Y., Dijair Antonino, J., Rodiuc, N., Vieira, P., R. Coelho, R., Chevalier, C., Eekhout, T., Engler, G., De Veylder, L., Grossi-de-Sa, MF., De Almeida Engler, J. (2020). The plant WEE1 kinase is involved in checkpoint control activation in nematode induced galls. New Phytologist, 225 (1), 430-447.  DOI : 10.1111/nph.16185

Caglayan, K., Gazel, M., Roumi, V., Kocabag, H.D., Tunç, B., Reynard, J.S., Ruiz-García, A.B., Olmos, A., Candresse, T. (2020). Identification of Pomegranate as a New Host of Passiflora Edulis Symptomless Virus (PeSV) and Analysis of PeSV Diversity. Agronomy. 2020; 10(11):1821. DOI : 10.3390/agronomy10111821

Candresse, T., A. Marais, C. Faure, M. Lefebvre, T. Lacombe and J.-M. Boursiquot (2020). Complete genome sequence of a novel grapevine-infecting member of the genus Polerovirus, grapevine polerovirus 1. Archives of Virology 165(7): 1683-1685. DOI : 10.1007/s00705-020-04640-4

Cakpo, C.B., Vercambre, G., Baldazzi, V., Roch, L., Dai, Z., Valsesia, P., Memah, M.M., Colombié, S., Moing, A., Gibon, Y., Genard, M. (2020). Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species. Annals of Botany, 126(3), 455-470. DOI : 10.1093/aob/mcaa082 

Chen, J., Beauvoit, B., Colombié, S., Roch, L., Capko, C. B., Vercambre, G., Génard, M., Andrieu, M. H., Jacob, D., Girollet, N., Moing, A., Gomès, E., Gibon, Y., Dai, Z. (2020). An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism. Acta Horticulturae, 1296, 401-410. DOI :10.17660/ActaHortic.2020.1296.52.

Cirilli, M., Micali, S., Aranzana, M.J., Arus, P., Babini, A., Barreneche, T., Bink, M.C., Cantín, C.,  Ciacciulli,A.,  Cos-Terrer, J., Drogoudi, P., Eduardo, I., Foschi, S., Giovannini, D., Guerra, W., Liverani, A.,  Pacheco, I., Pascal, T., Quilot-Turion, B., Verde, I., Rossini L., Bassi, D. (2020). The multi-site PeachRefPop collection: a true cultural heritage and international scientific tool for fruit trees. Plant Physiology, 184 (2), 632-646. DOI : 10.1104/pp.19.01412

Cornu, J.-Y., Bussiere, S., Coriou, C., Robert, T., Maucourt, M., Deborde, C., Moing A., Nguyen, C. (2020). Changes in plant growth, Cd partitioning and xylem sap composition in two sunflower cultivars exposed to low Cd concentrations in hydroponics. Ecotoxicology and Environmental Safety 205: 111145. DOI : 10.1016/j.ecoenv.2020.111145

Darbyshire, R., Lopez, J.N., Song, X.X., Wenden, B.,  Close, D. (2020). Modelling cherry full bloom using 'space-for-time' across climatically diverse growing environments. Agricultural And Forest Meteorology, 284, UNSP 107901. DOI : 10.1016/j.agrformet.2020.107901

Denoyes, B., Gaston, A., Rothan, C. (2020). Make it bloom! CONSTANS contributes to day neutrality in rose.  Journal of Experimental Botany 71(14): 3923-3926. DOI :10.1093/jxb/eraa270

Dey, A., Charrier, B., Martineau, E., Deborde, C., Gandriau, E., Moing, A., Jacob, D., Eshchenko, D., Schnell, M., Melzi, R., Kurzbach, D., Ceillier, M., Chappuis, Q., Cousin, S. F., Kempf, J. G., Jannin, S., Dumez, J. N., Giraudeau, P. (2020). Hyperpolarized NMR Metabolomics at Natural ¹³C Abundance. Analytical chemistry, 92(22), 14867–14871. DOI : 10.1021/acs.analchem.0c03510

Donkpegan, A., Doucet, J.-L., Hardy, O., Heuertz, M.,  Piñeiro, R. (2020). Miocene diversification in the Savannahs precedes tetraploid rainforest radiation in the african tree genus Afzelia (Detarioideae, Fabaceae). Frontiers in Plant Science, 11, 798 (1-14). DOI : 10.3389/fpls.2020.00798

Duran Garzon, C., Lequart, M., Rautengarten, C., Bassard, S., Sellier-Richard, H., Baldet, P., Heazlewood, JL., Gibon, Y., Domon, JM., Giauffret, C., Rayon, C. (2020). Regulation of carbon metabolism in two maize sister lines contrasted for chilling tolerance. Journal of experimental botany, 71 (1), 356–369. DOI : 10.1093/jxb/erz421

Fernie, A., Hashida, S.-N., Yoshimura, K., Gakière, B., Mou, Z., Petriacq, P. (2020). Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science, 11, 146. DOI : 10.3389/fpls.2020.00146

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Gammoudi, I., Mathelié-Guinlet, M., Benabdallah, Z., Moroté, F., Kahli, H., Beven, L., Kalfat, R., Othmane, A., Delville, M.H., Grauby-Heywang, C., Dejous C., Cohen-Bouhacina, T. (2020). Revisiting of the physico-chemical properties of polyelectrolyte multilayers for a fine tuning of the immobilization of bacteria or nanoparticles. Thin Solid Films, 713: 138345. DOI : 10.1016/j.tsf.2020.138345

Garbelotto, M., Rubino, L., Candresse, T., Janse, J., Gonthier, P. (2020). The Journal of Plant Pathology Editors’ Choice November 2020. Journal of Plant Pathology, 102 (4), pp.983-984. DOI : 10.1007/s42161-020-00691-3

Garcia-Morales, L., Ruiz, E., Gourgues, G., Rideau, F., Piñero-Lambea, C., Lluch-Senar, M., Blanchard, A., Lartigue, C. (2020). A RAGE Based Strategy for the Genome Engineering of the Human Respiratory Pathogen Mycoplasma pneumoniae. ACS Synth Biol., 9 (10), 2737-2748. DOI :10.1021/acssynbio.0c00263.

Gaspari, E., Malachowski, A., Garcia-Morales, L., Burgos, R., Serrano, L., Martins dos Santos, V., A P, Suarez-Diez, M. (2020, 2020-10-23). Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media. npj Systems Biology and Applications, 6(1), 33. DOI : 10.1038/s41540-020-00153-7

Gaston, A., Osorio, S., Denoyes, B., Rothan, C. (2020). Applying the Solanaceae Strategies to Strawberry Crop Improvement. Trends in Plant Science, 25 (2), 130-140. DOI : 10.1016/j.tplants.2019.10.003

German-Retana, S., Mäkinen, K. (2020). Special Issue: The Complexity of the Potyviral Interaction Network. Viruses, 12(8), E874. DOI : 10.3390/v12080874

Guillaumie, S., Decroocq, S., Ollat, N., Delrot, S., Gomes, E., Cookson, S. (2020). Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators. BMC Plant Biology, 20 (1), 43.  DOI : 10.1186/s12870-020-2258-0

Gürcan, K., Teber S., Candresse, T. (2020). Genetic analysis suggests a long and largely isolated evolutionary history of plum pox virus strain D in Turkey. Plant Pathology, 69 (2). DOI : 10.1111/ppa.13115

Hančinský, R., Mihálik, D., Mrkvová, M., Candresse, T., Glasa, M. (2020). Plant Viruses Infecting Solanaceae Family Members in the Cultivated and Wild Environments: A Review. Plants, 9(5), 667. DOI : 10.3390/plants9050667

Harne, S., Duret, S., Pande, V., Bapat, M., Béven, L., Gayathri, P. (2020). MreB5 Is a Determinant of Rod-to-Helical Transition in the Cell-Wall-less Bacterium Spiroplasma. Current biology, 30 (23), 4753-4762.e7. DOI : 10.1016/j.cub.2020.08.093

Harne, S., Gayathri, P., Béven, L. (2020). Exploring Spiroplasma Biology: Opportunities and Challenges. Frontiers in microbiology, 11, 589279. DOI :  10.3389/fmicb.2020.589279

Hily, J.M., Poulicard, N., Candresse, T., Vigne, E., Beuve, M., Renault, L., Velt, A., Spilmont, A.S. & Lemaire, O. (2020). Datamining, genetic diversity analyses and phylogeographic reconstructions redefine the evolutionary history of grapevine Pinot gris virus and grapevine berry inner necrosis virus. Phytobiomes Journal, 24 (2), 165-177. DOI : 10.1094/PBIOMES-10-19-0061-R

Huang, W., Reyes-Caldas, P., Mann, M., Seifbarghi, S., Kahn, A., Almeida, R.P.P., Béven, L., Heck, M., Hogenhout, S.A., Coaker, G. (2020). Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions. Molecular Plant, 13(10):1379-1393. DOI : 10.1016/j.molp.2020.08.010.

Jacob, D., David, R., Aubin, S., Gibon, Y. (2020). Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience, 9 (12), giaa144. DOI:  10.1093/gigascience/giaa144

Jollard, C., Foissac, X., Desque, D., Razan, F., Garcion, C., Beven, L., Eveillard, S. (2020). Flavescence Dorée Phytoplasma Has Multiple ftsH Genes that Are Differentially Expressed in Plants and Insects. International Journal of Molecular Sciences, 21 (1), 150. DOI : 10.3390/ijms21010150

Jores, J., Baldwin, C., Blanchard, A., Browning, G., Colston, A., Gerdts, V., Goovaerts, D., Heller, M., Juleff, N., Labroussaa, F., Liljander, A., Muuka, G., Nene, V., Nir-Paz, R., Sacchini, F., Summerfield, A., Thiaucourt, F., Unger, H., Vashee, S., Wang X., Salt, J.  (2020). Contagious Bovine and Caprine Pleuropneumonia: a research community's recommendations for the development of better vaccines. NPJ vaccines 5(1): 66. DOI : 10.1038/s41541-020-00214-2

Khalili, M., Candresse, T., Faure, C. et al. (2020). Complete genome sequence of almond luteovirus 1, a novel luteovirus infecting almond. Archives of Virology, 165 (9), 2123-2126.  DOI : 10.1007/s00705-020-04715-2

Kreuze, J., Vaira, A.M., Menzel, W., Candresse, T., Zavriev, S., Hammond, K.J., Hyun Ryu, K., and I. Report Consortium (2020). ICTV Virus Taxonomy Profile: Alphaflexiviridae.  Journal of General Virology, 101 (7), 699-700. DOI : 10.1099/jgv.0.001436

Labadie, M., Vallin, G., Petit, A., Ring, L., Hoffmann, T.,  Gaston, A., Potier, A., Schwab, W., Rothan, C., Denoyes, B. (2020). Metabolite Quantitative Trait Loci for flavonoids provide new insights into the genetic architecture of strawberry (Fragaria x ananassa) fruit quality. Journal of Agricultural and Food Chemistry, 68 (25), 6927-6939. DOI : 10.1021/acs.jafc.0c01855⟩

Laurent, B., Larue, C., Chancerel, E., Guichoux, E., Petit, R.J., Barreneche, T., Robin, C., Lepais, O. (2020). Microhaplotype genotyping-by-sequencing of 98 highly polymorphic markers in three chestnut tree species. Conservation Genetics Resources, 12, 567–580 . DOI : 10.1007/s12686-020-01157-5

Le Bihan, Z., Cosson, P., Rolin, D., Schurdi‐Levraud, V. (2020). Phenological growth stages of stevia (Stevia rebaudiana Bertoni) according to the BBCH scale. Ann Appl Biol., 177 (3), 404-416. DOI:10.1111/aab.12626

Le Bihan, Z., Gaudin, J., Robledo-Garcia, F., Cosson, P., Hastoy, C., Rolin, D., Schurdi-Levraud, V. (2020). First Report of Sclerotium stem rot caused by Sclerotium rolfsii on Stevia rebaudiana in southwestern France. Plant Disease, 104(2), 584. DOI : 10.1094/PDIS-04-19-0696-PDN

Li, T., Inzé, D., Gonzalez, N., Dubois, M. (2020). Emerging Connections between Small RNAs and Phytohormones. Trends in Plant Science, 25 (9), 912-929. DOI : 10.1016/j.tplants.2020.04.004

Loupit, G., Prigent, S., Franc, C., de Revel, G., Richard, T. et al.. (2020) Polyphenol Profiles of Just Pruned Grapevine Canes from Wild Vitis Accessions and Vitis vinifera Cultivars. Journal of Agricultural and Food Chemistry, 68, 13397–13407. DOI : 10.1021/acs.jafc.9b08099

Luna, E., Flandin, A., Cassan, C., Prigent, S., Chevanne, C., Kadiri, F., Gibon, Y., Petriacq, P. (2020). Metabolomics to Exploit the Primed Immune System of Tomato Fruit. Metabolites, 10 (3), 96. DOI : 10.3390/metabo10030096

Ma, Y., Marais, A., Lefebvre, M., Faure, C., Candresse, T. (2020). Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum. Virology, 540, 38-44.  DOI : 10.1016/j.virol.2019.11.009

Ma, Y., Marais, A., Lefebvre, M., Theil, S., Svanella-Dumas, L., Faure, C., Candresse, T. (2020). Phytovirome Analysis of Wild Plant Populations: Comparison of Double-Stranded RNA and Virion-Associated Nucleic Acid Metagenomic Approaches. Journal of Virology, 94 (1), e01462-9. DOI : 10.1128/JVI.01462-19

Maclot, F.J., Candresse, T., Filloux,D.,  Malmstrom , C.M., Roumagnac, P., Van Der Vlugt, R.A.V., Massart, S. (2020). Illuminating an ecological blackbox: Using High Throughput Sequencing to characterize the plant virome across scales. Frontiers in Microbiology, 11, 578064. DOI : 10.3389/fmicb.2020.578064

Mageroy, M.H., Wilkinson, S.., Tengs, T., Cross, H., Almvik, M., Pétriacq, P., Vivian-Smith, A., Zhao, T., Fossdal, C.G., Krokene, P. (2020). Molecular underpinnings of methyl jasmonate-induced resistance in Norway spruce. Plant Cell Environ, 43 (8), 1827-1843. doi: 10.1111/pce.13774

Malembic-Maher S, Desqué D, Khalil D, Salar P, Bergey B, Danet J-L, et al. (2020) When a Palearctic bacterium meets a Nearctic insect vector: Genetic and ecological insights into the emergence of the grapevine Flavescence dorée epidemics in Europe. PLoS Pathog 16(3): e1007967. 10.1371/journal.ppat.1007967

Marais, A., Faure, C., Lefebvre, M., Lacombe, T., Boursiquot, J.M., Candresse, T. (2020) Molecular diversity of grapevine Kizil Sapak virus and implications for its detection. Archives of Virology, 165, 1849-1853. DOI : 10.1007/s00705-020-04673-9

Marais, A., Šafářová, D., Navrátil, M., Faure, C., Cornaggia, D., Brans, Y., Suchá, J., Candresse, T. (2020). Complete genome sequence of cherry virus T, a novel cherry-infecting tepovirus. Arch Virol., 165, 1711-1714. DOI : 10.1007/s00705-020-04656-w.

Marais, A., Umber, M., Filloux, D., Gomez, R.-M., Faure, C., Pavis, C., Julian, C., Roumagnac, P., Acina-Mambole, I., Bonheur, L., Theil, S., Contreras, S., Candresse, T., Teycheney, P.-Y.  (2020). Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Archives of Virology, 165, 2653–2657. DOI : 10.1007/s00705-020-04787-0

Maree, H. J., Blouin, A. G., Diaz-Lara, A., Mostert, I., Al Rwahnih, M., Candresse, T. (2020). Status of the current vitivirus taxonomy. Archives of Virology, 165 (2), 451-458.  DOI : 10.1007/s00705-019-04500-w

Moing A., Allwood J.W., Aharoni A., Baker J.M., Beale M.H., Ben-Dor S., Biais B., Brigante F., Burger J., Deborde C., Erban A., Faigenboim A., Gur A., Goodacre R., Hansen T.H., Jacob D., Katzir N., Kopka J., Lewinshon E., Maucourt  M., Meir S., Miller S., Mumm R., Oren E., Paris H.S., Rogachev I., Rolin D., Saar U., Schjoerring J.K., Tadmor Y., Tsuri G., De Vos R.C.H., Ward J.L., Yeselson E., Hall R.D. & Schaffer A.A. (2020) Comparative metabolomics and molecular phylogenetics of melon (Cucumis melo, Cucurbitaceae) biodiversity. Metabolites 10, 121.  DOI : 10.3390/metabo10030121  

Moreira, CJS, Bento, A., Pais, J., Petit, J., Escórcio, R., Correia, V., Pinheiro, A., Haliński, L.P., Mykhaylyk, O.O., Rothan, C., Silva Pereira, C. (2020). Novel ionic liquids-based extraction method that preserves molecular structure from cutin. bioRxiv ; Preprint DOI: 10.1101/2020.06.01.127837

Moreira, C.J., Bento, A., Pais, J., Petit, J., Escórcio, R., Correia, V., Pinheiro, Â., Haliński, Ł. P., Mykhaylyk, O. O., Rothan, C., & Silva Pereira, C. (2020). An ionic liquid extraction that preserves the molecular structure of cutin shown by nuclear magnetic resonance. Plant physiology, 184, 592–606. DOI : 10.1104/pp.20.01049

Musseau, C., Jorly, J., Gadin, S., Sørensen, I., Deborde, C., Bernillon, S., Mauxion, J.-P., Atienza, I., Moing, A., Lemaire-Chamley, M., Rose, J. K. C., Chevalier, C., Rothan, C., Fernandez-Lochu, L., Gévaudant, F.  (2020). The Tomato Guanylate-Binding Protein SlGBP1 Enables Fruit Tissue Differentiation by Maintaining Endopolyploid Cells in a Non-proliferative State. The Plant cell, 32, 3188–320. DOI : 10.1105/tpc.20.00245⟩.

Nelissen, H., Gonzalez, N.(2020). Understanding plant organ growth: a multidisciplinary field. Journal of Experimental Botany, 71(1), 7-10.  DOI : 10.1093/jxb/erz448

Nickel, O., Fajardo, T.V.M., Candresse, T. (2020). First report on detection of three bunya-like viruses in apples in Brazil. Plant Disease, 104(11). DOI : 10.1094/PDIS-02-20-0283-PDN

Paiva, T.O., Torbensen, K., Patel, A.N., Anne, A., Chovin, A., Demaille, C., Bataille, L., Michon, T. (2020). Probing the Enzymatic Activity of Individual Biocatalytic fd-Viral Particles by Electrochemical-Atomic Force Microscopy. ACS Catalysis, 10 (14), 7843-7856.  DOI: 10.1021/acscatal.0c01920

Pecinka, A., Chevalier, C., Colas, I., Kalantidis, K., Varotto, S., Krugman, T., Michaelidis, C., Vallés, M.-P., Muñoz, A., Pradillo, M. (2019). Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants. Journal of Experimental Botany, 71(17), 5205-5222. DOI : 10.1093/jxb/erz457

Pereira-Lorenzo, S., Bischofberger, Y., Conedera, M., Piattini, P., Crovadore, J., Chablais, R., Rudow, A., Hatt, S., Ramos-Cabrer, A.M., Barreneche,T., Lefort, F. (2020). Reservoir of the European chestnut diversity in Switzerland, Biodiversity and Conservation, 29, 2217-2234. DOI:  10.1007/s10531-020-01970-2

Philippe, G., Geneix, N., Petit, J., Guillon, F., Sandt, C., Rothan, C., Lahaye, M., Marion, D., Bakan, B. (2020). Assembly of tomato fruit cuticles: a cross‐talk between the cutin polyester and cell wall polysaccharides. New Phytologist, 226 (3), 809-822.  DOI : 10.1111/nph.16402

Reynard, J. S., Brodard, J., Remoliff, E., Lefebvre, M., Schumpp, O., & Candresse, T. (2020). A novel foveavirus identified in wild grapevine (Vitis vinifera subsp. sylvestris). Archives of virology, 165(12), 2999–3002. DOI :  10.1007/s00705-020-04817-x

Roch, L., Prigent, S., Klose, H.,  Cakpo, C.B., Beauvoit, B., Deborde, C., Fouillen, L., van Delft, P., Jacob, J. , Usadel, B., Dai, Z. , Génard, M., Vercambre, G., Colombié, S., Moing, A., Gibon, Y. (2020). Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species. Journal of Experimental Botany, 71(19), 5823–5836. DOI :  10.1093/jxb/eraa302

Roques, S., Deborde, C., Guimas, L., Marchand, Y., Richard, N., Jacob, D., Skiba-Cassy, S., Moing, A., Fauconneau, B. (2020). Integrative Metabolomics for Assessing the Effect of Insect (Hermetia illucens) Protein Extract on Rainbow Trout Metabolism. Metabolites, 10, 83. DOI : 10.3390/metabo10030083

Roques, S., Deborde, C., Richard, N., Marchand, Y., Larroquet, L., Prigent, S., Skiba-Cassy, S., Moing, A., Fauconneau, B. (2020). Proton-NMR Metabolomics of Rainbow Trout Fed a Plant-Based Diet Supplemented with Graded Levels of a Protein-Rich Yeast Fraction Reveal Several Metabolic Processes Involved in Growth. The Journal of nutrition, 150(9), 2268-2277. DOI : 10.1093/jn/nxaa206

Ruiz-García, A.B., Candresse, T., Canales, C., Morán, F., Machado de Oliveira, C., Bertolini, E., Olmos, A. (2020) Molecular Characterization of the Complete Coding Sequence of Olive Leaf Yellowing-Associated Virus. Plants, 9 (10), 1272. DOI : 10.3390/plants9101272

Rumbou, A., Candresse, T., Marais, A., Svanella-Dumas, L., Landgraf, M., von Bargen, S., Büttner, C. (2020). Unravelling the birch virome: RNA-Seq reveals a complex of known and novel viruses. PLoS ONE, 15(6), e0221834. DOI : 10.1371/journal.pone.0221834

Sankaranarayanan, S., Jamshed, M., Delmas, F., Yeung, E., Samuel, M. (2020). Identification and characterization of a female gametophyte defect in sdk1-7 +/- abi3-6 +/- heterozygotes of Arabidopsis thaliana. Plant Signaling and Behavior, 15(8), 1780038. DOI : 10.1080/15592324.2020.1780038

Shinozaki, Y., Beauvoit, B.P., Takahara, M., Hao, S., Ezura, K., Andrieu, M.H., Nishida, K., Mori, K.,  Suzuki, Y., Kuhara, S., Enomoto, H., Kusano, M., Fukushima, A., Mori, T., Kojima, M., Kobayashi, M., Sakakibara, H., Saito, K., Ohtani, Y., Bénard, C., Prodhomme, D., Gibon, Y., Ezura, H., Ariizumi, T. (2020). Fruit setting rewires central metabolism via gibberellin cascades. Proceedings of the National Academy of Sciences, 117(38), 23970-23981. DOI: 10.1073/pnas.2011859117

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Steelheart, C., Alegre, M.L., Baldet, P., Rothan, C., Bres, C., Just, D., Okabe, Y., Ezura, H., Ganganelli, I., Geoff Grozeff, E., Bartoli, C.G. (2020). The effect of low ascorbic acid content on tomato fruit ripening. Planta 252(3), 36 (2020). DOI : 10.1007/s00425-020-03440-z

Umber, M., Filloux, D., Gélabale, S., Gomez, R.-M., Marais, A., Gallet, S., Gamiette, F,; Pavis, C., Teycheney, P.-Y. (2020). Molecular Viral Diagnosis and Sanitation of Yam Genetic Resources: Implications for Safe Yam Germplasm Exchange. Viruses, 12 (10), 1101. DOI : 10.3390/v12101101

Vashee, S., Arfi, Y., Lartigue, C. (2020). Budding yeast as a factory to engineer partialand complete microbial genomes. Current Opinion in Systems Biology, 24, 1-8. DOI :  10.1016/j.coisb.2020.09.003.

Vercruysse, J., Baekelandt, A., Gonzalez, N., Inzé, D. (2020). Molecular networks regulating cell division during Arabidopsis leaf growth. Journal of Experimental Botany, 71(8), 2365 - 2378. DOI : 10.1093/jxb/erz522

Vercruysse, J., Van Bel, M., Osuna-Cruz, CM., Kulkarni, SR., Storme, V., Nelissen, H., Gonzalez, N., Inzé, D., Vandepoele, K (2020). Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth. Plant Biotechnology Journal, 18, 553-567.  DOI : 10.1111/pbi.13223

Vimont, N., Quah, F. X., Schöpfer, D. G., Roudier, F., Dirlewanger, E., Wigge, Wenden, B., Cortijo, S. (2020). ChIP-seq and RNA-seq for complex and low-abundance tree buds reveal chromatin and expression co-dynamics during sweet cherry bud dormancy. Tree Genetics and Genomes, 16 (1), 9.  DOI : 10.1007/s11295-019-1395-9

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Takei, H., Shinozaki, Y., Yano, Kashojiya, Hernould, M., Chevalier, C., Ezura, H., Ariizumi, T. (2019). Loss-of-Function of a Tomato Receptor-Like Kinase Impairs Male Fertility and Induces Parthenocarpic Fruit Set. Frontiers in Plant Science, 10, 403. DOI : 10.3389/fpls.2019.00403

Teber, S., Ceylan, Gürcan, Candresse, T., Serçe, Ç. U., Akbulut, Kaymak, S., Akbaş (2019). Genetic diversity and molecular epidemiology of the T strain of Plum pox virus . Plant Pathology, 68, 755-763. DOI : 10.1111/ppa.12974

Tiukova, IA., Prigent, S., Nielsen, J., Sandgren, M., Kerkhoven, EJ (2019). Genome-scale model of Rhodotorula toruloides metabolism. Biotechnology and bioengineering, 116 (12), 3396-3408. , DOI : 10.1002/bit.27162

Torbensen, K., Patel, Anne, A., Chovin, Demaille, C., Bataille, L., Michon, T., Grelet, E. (2019). Immuno-Based Molecular Scaffolding of Glucose Dehydrogenase and Ferrocene Mediator on fd Viral Particles Yields Enhanced Bioelectrocatalysis. ACS Catalysis, 9, 5783-5796. DOI : 10.1021/acscatal.9b01263

Van Oosten, M. J., Dell'Aversana, E., Ruggiero, A., Cirillo, V., Gibon, Y., Woodrow, P., Maggio, A., Carillo, P. (2019). Omeprazole Treatment Enhances Nitrogen Use Efficiency Through Increased Nitrogen Uptake and Assimilation in Corn. Frontiers in Plant Science, 10, 1507. DOI : 10.3389/fpls.2019.01507

Vimont, N., Fouché, M., Campoy, J. A., Tong, M., Arkoun, M., Yvin, JC., Wigge, P. A., Dirlewanger, E., Cortijo, S., Wenden, B. (2019). From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy. BMC Genomics, 20 (1), 974.  DOI : 10.1186/s12864-019-6348-z

Von Bargen, S., Dieckmann, HL., Candresse, T., Mühlbach, H.-P., Roßbach, J., Büttner, C (2019). Determination of the complete genome sequence of European mountain ash ringspot-associated emaravirus from Sorbus intermedia reveals two additional genome segments. Archives of Virology, 164 (7), 1937-1941. DOI : 10.1007/s00705-019-04275-0

Walter, J., Barra, A., Doublet, B., Céré, N., Charon, J., Michon, T. (2019). Hydrodynamic Behavior of the Intrinsically Disordered Potyvirus Protein VPg, of the Translation Initiation Factor eIF4E and of their Binary Complex. International Journal of Molecular Sciences, 20 (7), 1794. DOI : 10.3390/ijms20071794

Walter, J., Charon, J., Hu, Y., Lachat, J., Leger, T., Lafforgue, G., Barra, A., Michon, T. (2019). Comparative analysis of mutational robustness of the intrinsically disordered viral protein VPg and of its interactor eIF4E. Plos One, 14 (2), e0211725. DOI : 10.1371/journal.pone.0211725

Williams, A., Cotton, A., Ton, Petriacq, P. (2019). An Adjustable Protocol to Analyze Chemical Profiles of Non-sterile Rhizosphere Soil. Bio-Protocol, 9 (10), e3245. , DOI : 10.21769/BioProtoc.3245

Wulff, N. A., Fassini, CG., Marques, VV., Martins, EC., Coletti, DAB., Teixeira, DDC., Sanches, M. M., Bove, J. (2019). Molecular Characterization and Detection of 16SrIII Group Phytoplasma Associated with Huanglongbing Symptoms. Phytopathology, 109 (3), 366-374. , DOI : 10.1094/PHYTO-03-18-0081-R

Zhebentyayeva, T., Shankar, V., Scorza, R., Callahan, A., Ravelonandro, M., Castro, S., DeJong, T., Saski, CA., Dardick, C (2019). Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping. Horticulture research, 6, 12. DOI : 10.1038/s41438-018-0090-6

2018

Arricau-Bouvery, N., Duret, S., Dubrana, M.-P., Batailler, B., Desque, D., Beven, L., Danet, J.-L., Monticone, M., Bosco, D., Malembic-Maher, S., Foissac, X. (2018). Variable membrane protein A of flavescence dorée phytoplasma binds the midgut perimicrovillar membrane of Euscelidius variegatus and promotes adhesion to its epithelial cells. Applied and Environmental Microbiology, 84 (8), e02487-17. , DOI : 10.1128/AEM.02487-17

Atanasova-Penichon, V., Legoahec, L., Bernillon, S., Deborde, C., Maucourt, M., Verdal-Bonnin, M.-N., Pinson-Gadais, L., Ponts, N., Moing, A., Richard-Forget, F. (2018). Mycotoxin biosynthesis and central metabolism are two interlinked pathways in Fusarium graminearum, as demonstrated by the extensive metabolic changes induced by caffeic acid exposure. Applied and Environmental Microbiology, 84 (8), e01705-17. DOI : 10.1128/AEM.01705-17

Baby, V., Labroussaa, F., Brodeur, J., Matteau, D., Gourgues, G., Lartigue, C., Rodrigue, S (2018). Cloning and transplantation of the Mesoplasma florum genome. ACS Synthetic Biology, 7 (1), 209-217. , DOI : 10.1021/acssynbio.7b00279

Baekelandt, A., Pauwels, L., Wang, Z., Li, N., De Milde, L., Natran, A., Vermeersch, M., Li, Y., Goossens, A., Inzé, D., Gonzalez, N (2018). Arabidopsis Leaf Flatness Is Regulated by PPD2 and NINJA through Repression of CYCLIN D3 Genes. Plant Physiology, 178 (1), 217-232. , DOI : 10.1104/pp.18.00327

Balakishiyeva, G., Bayramova, Mammadov, Salar, P., Danet, J.-L., Ember, I., Verdin, E., Foissac, X., Huseynova, I. (2018). Important genetic diversity of ‘Candidatus Phytoplasma solani’ related strains associated with bois noir grapevine yellows and planthoppers in Azerbaijan. European Journal of Plant Pathology, 151 (4), 937-946. , DOI : 10.1007/s10658-018-1429-4

Bastet, A., Lederer, B., Giovinazzo, N., Arnoux, X., German-Retana, S., Reinbold, C., Brault, V., Garcia, D., Djennane, S., Gersch, S., Lemaire, O., Robaglia, C., Gallois, JL (2018). Trans-species synthetic gene design allows resistance pyramiding and broad-spectrum engineering of virus resistance in plants. Plant biotechnology journal, 16 (9), 1569-1581. DOI : 10.1111/pbi.12896

Beauvieux, R., Wenden, B., Dirlewanger, E. (2018). Bud Dormancy in Perennial Fruit Tree Species: A Pivotal Role for Oxidative Cues. Frontiers in Plant Science, 9, 657. DOI : 10.3389/fpls.2018.00657

Beauvoit, B., Belouah, I., Bertin, N., Cakpo, CB., Colombié, S., Dai, Z., Gautier, H., Génard, M., Moing, A., Roch, L., Vercambre, G., Gibon, Y (2018). Putting primary metabolism into perspective to obtain better fruits. Annals of botany, 122 (1), 1-21. DOI : 10.1093/aob/mcy057

Belouah, I., Blein-Nicolas, M., Balliau, T., Gibon, Y., Zivy, M., Colombié, S (2018). Peptide filtering differently affects the performances of XIC-based quantification methods. Journal of proteomics, , 193, 131-141, DOI : 10.1016/j.jprot.2018.10.003

Ben Hafsa, A., Nabi, M’rabet Saamali, Zellama, Theil, S., Faure, C., Berard, A., Brunel, D., Le Paslier, M.-C., Marais, A., Candresse, T., Chaouachi (2018). Status of potato viruses in Tunisia and molecular characterization of Tunisian Potato Virus X (PVX) isolates. European Journal of Plant Pathology, 151 (3), 735-744. , DOI : 10.1007/s10658-017-1407-2

Bermúdez, L., Del Pozo, T., Lira, B. S., de Godoy, F., Boos, I., Romanó, C., Previtali, V., Almeida, J., Brehelin, C., Asis, R., Quadrana, L., Demarco, D., Alseekh, S., Salinas Gamboa, R., Pérez-Flores, L., Dominguez, PG., Rothan, C., Fernie, AR., González, M., Stocker, A., Hemmerle, A., Clausen, MH., Carrari, F., Rossi, M (2018). A Tomato Tocopherol Binding Protein Sheds Light on Intracellular α-tocopherol Metabolism in Plants. Plant and Cell Physiology, 59 (11), 2188-2203. , DOI : 10.1093/pcp/pcy191

Bernard, A., Barreneche, T., Lheureux, F., Dirlewanger, E (2018). Analysis of genetic diversity and structure in a worldwide walnut (Juglans regia L.) germplasm using SSR markers. PloS one, 13 (11), e0208021. , DOI : 10.1371/journal.pone.0208021

Bernard, A., Lheureux, F., Dirlewanger, E. (2018). Walnut: past and future of genetic improvement. Tree Genetics and Genomes, 14 (1). DOI : 10.1007/s11295-017-1214-0

Bernillon, S., Maucourt, Deborde, Chéreau, Jacob, Priymenko, Laporte, Coumoul, Salles, Rogowsky, Richard-Forget, Moing (2018). Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding.  Metabolomics, 14 (3). , DOI : 10.1007/s11306-018-1329-9

Beuve, M., Hily, J.-M.,  Alliaume, A., Reinbold, C., Le Maguet, J., Candresse, T., Herrbach, E., Lemaire, O. (2018). A complex virome unveiled by deep sequencing analysis of RNAs from a French Pinot Noir grapevine exhibiting strong leafroll symptoms. Archives of Virology, 163, 2937-2946, DOI : 10.1007/s00705-018-3949-9

Bianchetti, R. E., Silvestre Lira, B., Santos Monteiro, S., Demarco, D., Purgatto, E., Rothan, C., Rossi, M., Freschi, L. (2018). Fruit-localized phytochromes regulate plastid biogenesis, starch synthesis and carotenoid metabolism in tomato. Journal of Experimental Botany, 69 (15), 3573-3586. , DOI : 10.1093/jxb/ery145

Blötz, C., Lartigue, C., Valverde Timana, Y., Ruiz, E., Paetzold, B., Busse, J., Stülke, J. (Auteur de correspondance) (2018). Development of a replicating plasmid based on the native oriC in Mycoplasma pneumoniae. Microbiology (Reading), 164 (11), 1372-1382, DOI : 10.1099/mic.0.000711

Bollier, N., Sicard, A., Gonzalez, N., Chevalier, C., Hernould, M., Delmas, F. (2018). Induced ovule-to-flower switch by interfering with SlIMA activity in tomato. Plant Signaling and Behavior, 13 (6), e1473687. , DOI : 10.1080/15592324.2018.1473687

Bollier, N., Sicard, A., Leblond, J., Latrasse, D., Gonzalez, N., Gevaudant, F., Benhamed, M., Raynaud, C., Lenhard, M., Chevalier, C., Hernould, M., Delmas, F. (2018). At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 30, 83-100. , DOI : 10.1105/tpc.17.00653

Bortolamiol-Bécet, D., Monsion, B., Chapuis, S., Hleibieh, K., Scheidecker, D., Alioua, A., Bogaert, F., Revers, F., Brault, V., Ziegler-Graff, V. (2018). Phloem-Triggered Virus-Induced Gene Silencing Using a Recombinant Polerovirus. Frontiers in Microbiology, 9, 2449. , DOI : 10.3389/fmicb.2018.02449

Boudet, J. F., Mathelié-Guinlet, M., Vilquin, A., Douliez, J.-P., Beven, L., Kellay, H (2018). Large variability in the motility of spiroplasmas in media of different viscosities. Scientific Reports, 8 (1), 17138. , DOI : 10.1038/s41598-018-35326-2

Cañas, RA., Yesbergenova-Cuny, Z., Simons, M., Chardon, F., Armengaud, P., Quilleré, I., Cukier, C., Gibon, Y., Limami, AM., Nicolas, SD., Brulé, L., Lea, PJ., Maranas, CD., Hirel, B (2018). CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield. The Plant cell. , DOI : 10.1105/tpc.18.00273

Candresse, T., Theil, S., Faure, C., Marais, A. (2018). Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine. Archives of Virology, 163 (1), 277-280. , DOI : 10.1007/s00705-017-3587-7

Charon, J., Barra, A., Walter, J., Millot, P., Hébrard, E., Moury, B., Michon, T. (2018). First experimental assessment of protein intrinsic disorder involvement in an RNA virus natural adaptive process. Molecular Biology and Evolution, 35 (1), 38-49. , DOI : 10.1093/molbev/msx249

Chéreau, S., Rogowsky, P., Laporte, B., Coumoul, X., Moing, A., Priymenko, N., Steinberg, P., Wilhelm, R., Schiemann, J., Salles, B., Richard-Forget, F. (2018). Rat feeding trials: A comprehensive assessment of contaminants in both genetically modified maize and resulting pellets. Food and Chemical Toxicology, 121, 573-582. , DOI : 10.1016/j.fct.2018.09.049

Chuche, J., Danet, J.-L., Rivoal, J.-B., Arricau-Bouvery, N., Thiery, D. (2018). Minor cultures as hosts for vectors of extensive crop diseases: Does Salvia sclarea act as a pathogen and vector reservoir for lavender decline?. Journal of Pest Science, 91 (1), 145-155. DOI : 10.1007/s10340-017-0885-5

Cochetel, N., Meteier, E., Merlin, I., Hevin, C., Pouvreau, J.-B., Coutos-Thévenot, P., Hernould, M., Vivin, P., Cookson, S. J., Ollat, N., Lauvergeat, V. (2018). Potential contribution of strigolactones in regulating scion growth and branching in grafted grapevine in response to nitrogen availability. Journal of Experimental Botany, 69 (16), 4099-4112. , DOI : 10.1093/jxb/ery206

Douliez, JP., Martin, N., Beneyton, T., Eloi, JC., Chapel, JP., Navailles, L., Baret, JC., Mann, S., Béven, L (2018). Preparation of swellable hydrogel-containing colloidosomes from aqueous two-phase Pickering emulsion droplets. Angewandte Chemie (International ed. in English), 57, 7780-7784 DOI : 10.1002/anie.201802929

Douliez, JP., Perro, A., Chapel, JP., Goudeau, B., Béven, L (2018). Preparation of Template-Free Robust Yolk-Shell Gelled Particles from Controllably Evolved All-in-Water Emulsions. Small, e1803042. , DOI : 10.1002/smll.201803042

El-Sisi, Y., Omar, Sidaros, Elsharkawy, Foissac, X. (2018). Multilocus sequence analysis supports a low genetic diversity among ‘Candidatus Phytoplasma australasia’ related strains infecting vegetable crops and periwinkle in Egypt. European Journal of Plant Pathology, 150 (3), 779-784. , DOI : 10.1007/s10658-017-1311-9

Elbeaino, T., Marais, A., Faure, C., Trioano, E., Candresse, T., Parrella, G (2018). High-Throughput Sequencing Reveals Cyclamen persicum Mill. as a Natural Host for Fig Mosaic Virus. Viruses, 10 (12), 684. , DOI : 10.3390/v10120684

Ember, I., Bodor, Zsófi, Z., Pálfi, Ladányi, M., Pásti, G., Deák, Nyitrainé, Bálo, Szekeres, A., Bencsik, Foissac, X., Palkovics, L., Hunter, J. J., Bisztray (2018). Bois noir affects the yield and wine quality of Vitis vinifera L. cv. ‘Chardonnay’. European Journal of Plant Pathology, 152 (1), 185-197. , DOI : 10.1007/s10658-018-1462-3

Etienne, N., Bret, L., Le Brun, C., Lecuyer, H., Moraly, J., Lanternier, F., Hermine, O., Ferroni, A., Lecuit, M., Pereyre, S., Beven, L., Lortholary, O (2018). Disseminated Spiroplasma apis Infection in Patient with Agammaglobulinemia, France. Emerging Infectious Diseases, 24 (12), 2382-2386. , DOI : 10.3201/eid2412.180567

Filloux, D., Fernandez, E., Loire, E., Claude, L., Galzi, S., Candresse, T., Winter, S., Jeeva, M. L., Makeshkumar, T., Martin, D. P., Roumagnac, P. (2018). Nanopore-based detection and characterization of yam viruses. Scientific Reports, 8 (1), 17879. , DOI : 10.1038/s41598-018-36042-7

Gakière, B., Fernie, A. R., Petriacq, P. (2018). More to NAD+ than meets the eye: A regulator of metabolic pools and gene expression in Arabidopsis. Free Radical Biology and Medicine, 122, 86-95. , DOI : 10.1016/j.freeradbiomed.2018.01.003

Galetto, L., Abbà, S., Rossi, M., Vallino, M., Pesando, M., Arricau-Bouvery, N., Dubrana, M.-P., Chitarra, W., Pegoraro, M., Bosco, D., Marzachì, C (2018). Two phytoplasmas elicit different responses in the insect vector Euscelidius variegatus Kirschbaum. Infection and Immunity, 86 (5), e00042-18, DOI : 10.1128/IAI.00042-18

Gallois, J.-L., Moury, B., German-Retana, S. (2018). Role of the genetic background in resistance to plant viruses. International journal of molecular sciences, 19 (10), 2856. , DOI : 10.3390/ijms19102856

Gatesoupe, F.-J., Fauconneau, B., Deborde, C., Madji Hounoum, B., Jacob, D., Moing, A., Corraze, G., Médale, F. (2018). Intestinal microbiota in rainbow trout, Oncorhynchus mykiss , fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites. Aquaculture Nutrition,  24 (5), 1563-1576, DOI : 10.1111/anu.12793

Hao, J., Petriacq, P., De Bont, L., Hodges, M., Gakière, B. (2018). Characterization of l-aspartate oxidase from Arabidopsis thaliana. Plant Science, 271, 133-142. , DOI : 10.1016/j.plantsci.2018.03.016

Hily, J.-M., Beuve, M., Vigne, E., Demangeat, G., Candresse, T., Lemaire, O. (2018). A genome-wide diversity study of grapevine rupestris stem pitting-associated virus. Archives of Virology, Online first. , DOI : 10.1007/s00705-018-3945-0

Hily, J.-M., Candresse, T., Garcia, S., Vigne, E., Tannieres, M., Komar, V., Barnabé, G., Alliaume, A., Gilg, S., Hommay, G., Beuve, M., Marais, A., Lemaire, O. (2018). High-Throughput Sequencing and the Viromic Study of Grapevine Leaves: From the Detection of Grapevine-Infecting Viruses to the Description of a New Environmental Tymovirales Member. Frontiers in Microbiology, 9, 782, DOI : 10.3389/fmicb.2018.01782

Hily, J.-M., Demanèche, S., Poulicard, N., Tannières, M., Djennane, S., Beuve, M., Vigne, E., Demangeat, G., Komar, V., Gertz, C., Marmonier, A., Hemmer, C., Vigneron, S., Marais, A., Candresse, T., Simonet, P., Lemaire, O. (2018). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 16 (1), 208-220. , DOI : 10.1111/pbi.12761

Issa, A., Esmaeel, Q., Sanchez, L., Courteaux, B., Guise, JF., Gibon, Y., Ballias, P., Clément, C., Jacquard, C., Vaillant-Gaveau, N., Aït Barka, E (2018). Impacts of Paraburkholderia phytofirmans Strain PsJN on Tomato (Lycopersicon esculentum L.) Under High Temperature. Frontiers in plant science, 9, 1397. , DOI : 10.3389/fpls.2018.01397

Jurkiewicz, P., Melser, S., Maucourt, M., Ayeb, H., Veljanovski, V., Maneta-Peyret, L., Hooks, M., Rolin, D., Moreau, P., Batoko, H. (2018). The multistress-induced Translocator protein (TSPO) differentially modulates storage lipids metabolism in seeds and seedlings. Plant Journal, 96 (2). , DOI : 10.1111/tpj.14028

Kang, PJ., Miller, KE., Guegueniat, J., Beven, L., Park, HO (2018). The shared role of the Rsr1 GTPase and Gic1/Gic2 in Cdc42 polarization. Molecular biology of the cell, 29 (20), 2359-2369. , DOI : 10.1091/mbc.E18-02-0145

Katsiani, A., Maliogka, Katis, Svanella-Dumas, L., Olmos, A., Ruiz-García, Marais, A., Faure, C., Theil, S., Lotos, Candresse, T. (2018). High-Throughput Sequencing Reveals Further Diversity of Little Cherry Virus 1 with Implications for Diagnostics. Viruses, 10 (7), 385. , DOI : 10.3390/v10070385

Koloniuk, I., Sarkisova, T., Petrzik, K., Lenz, O., Přibylová, J., Fránová, J., Špak, J., Lotos, L., Beta, C., Katsiani, A., Candresse, T., Maliogka, VI (2018). -Infecting Fabaviruses with the Aid of High-Throughput Sequencing. Viruses, 10 (4). , DOI : 10.3390/v10040204

Lamari, N., Zhendre, V., Urrutia, M., Bernillon, S., Maucourt, M., Deborde, C., Prodhomme, D., Jacob, D., Ballias, P., Rolin, D., Sellier, H., Rabier, D., Gibon, Y., Giauffret, C., Moing, A. (2018). Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding. Metabolomics, 14 (10), 132. , DOI : 10.1007/s11306-018-1427-8

Lamichhane, J. R., Arseniuk, E., Boonekamp, P., Czembor, J., Decroocq, V., Enjalbert, J., Finckh, M. R., Korbin , M., Koppel , M., Kudsk, P., Mesterhazy , A., Sosnowska, D., Zimnoch-Guzowska , E., Messean, A. (2018). Advocating a need for suitable breeding approaches to boost Integrated Pest Management: A European perspective. Pest Management Science, 74 (6), 1219-1227, DOI : 10.1002/ps.4818

Li, N., Liu, Z., Wang, Z., Ru, L., Gonzalez, N., Baekelandt, A., Pauwels, L., Goossens, A., Xu, R., Zhu, Z., Inzé, D., Li, Y (2018). STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS genetics, 14 (2), e1007218. , DOI : 10.1371/journal.pgen.1007218

Marais, A., Faure, C., Theil, S., Candresse, T (2018). Molecular Characterization of a Novel Species of Capillovirus from Japanese Apricot (Prunus mume). Viruses, 10 (4), 144. , DOI : 10.3390/v10040144

Marais, A., Nivault, A., Faure, C., Comont, G., Theil, S., Candresse, T., Corio-Costet, M.-F. (2018). Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Neofusicoccum luteum. Archives of Virology, 163 (2), 559–562. , DOI : 10.1007/s00705-017-3620-x

Maree, H. J., Fox, A., Al Rwahnih, M., Boonham, N., Candresse, T. (2018). Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges. Frontiers in Plant Science, 9, 1082, DOI : 10.3389/fpls.2018.01082

Martin, N., Douliez, JP., Qiao, Y., Booth, R., Li, M., Mann, S (2018). Antagonistic chemical coupling in self-reconfigurable host-guest protocells. Nature communications, 9 (1), 3652. , DOI : 10.1038/s41467-018-06087-3

Mathelié-Guinlet, M., Grauby-Heywang, C., Martin, A., Février, H., Moroté, F., Vilquin, A., Beven, L., Delville, M.-H., Cohen-Bouhacina, T. (2018). Detrimental impact of silica nanoparticles on the nanomechanical properties of Escherichia coli , studied by AFM. Journal of Colloid and Interface Science, 529, 53-64. , DOI : 10.1016/j.jcis.2018.05.098

Michel, V., Julio, E., Candresse, T., Cotucheau, J., Decorps, C., Volpatti, R., Moury, B., Glais, L., Dorlhac de Borne, F., Decroocq, V., German-Retana, S. (2018). NtTPN1 : a RPP8 -like R gene required for Potato virus Y -induced veinal necrosis in tobacco. The Plant Journal, 95 (4), 700-714, DOI : 10.1111/tpj.13980

Mieulet, D., Aubert, G., Bres, C., Klein, A., Droc, G., Vieille, E., Rond-Coissieux, C., Sanchez, M., Dalmais, M., Mauxion, J.-P., Rothan, C., Guiderdoni, E., Mercier, R. (Auteur de correspondance) (2018). Unleashing meiotic crossovers in crops. Nature Plants, 4, 1010-1016, DOI : 10.1038/s41477-018-0311-x

Mortain-Bertrand, A., Stammitti, L., Telef, N., Colardelle, P., Brouquisse, R., Rolin, D., Gallusci, P. (2018). Corrigendum. Physiologia Plantarum, 162 (4), 518-520. DOI : 10.1111/ppl.12706

Nourinejhad Zarghani, S., Hily, J.-M., Glasa, M., Marais, A., Wetzel, T., Faure, C., Vigne, E., Velt, A., Lemaire, O., Boursiquot, J.-M., Okic, A., Ruiz-Garcia, A. B., Olmos, Lacombe, T., Candresse, T. (2018). Grapevine virus T diversity as revealed by full-length genome sequences assembled from high-throughput sequence data. Plos One, 13 (10), 17 p. , DOI : 10.1371/journal.pone.0206010

Olmos, A., Boonham, N., Candresse, T., Gentit, P., Giovani, B., Kutnjak, D., Liefting, L., Maree, H., Minafra, A., Moreira, A., Nakhla, M., Petter, Ravnikar, Rodoni, B., Roenhorst, J., Rott, M., Ruiz-García, Santala, J., Stancanelli, G., van der Vlugt, R., Varveri, C., Westenberg, Wetzel, T., Ziebell, H., Massart, S. (2018). High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities. Bulletin OEPP, 48(2), 219–224, DOI : 10.1111/epp.12472

Parrilla, J., Gaillard, C., Verbeke, J., Maucourt, M., Aleksandrov, RA., Thibault, F., Fleurat-Lessard, P., Gibon, Y., Rolin, D., Atanassova, R. (2018). Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells. FEBS Open Bio, 8 (5), 784-798. DOI : 10.1002/2211-5463.12415

Peltier, E., Bernard, M., Trujillo, M., Prodhomme, D., Barbe, JC., Gibon, Y., Marullo, P (2018). Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions. PloS one, 13 (1), e0190094. , DOI : 10.1371/journal.pone.0190094

Peltier, E., Sharma, V., Martí Raga, M., Roncoroni, M., Bernard, M., Jiranek, V., Gibon, Y., Marullo, P. (2018). Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices. BMC Genomics, 19 (1), 1-20. , DOI : 10.1186/s12864-018-5145-4

Peralta, D. A., Araya, A., Gomez-Casati, DF., Busi, MV (2018). Over-expression of SINAL7 increases biomass and drought tolerance, and also delays senescence in Arabidopsis. Journal of Biotechnology, 283, 11-21. , DOI : 10.1016/j.jbiotec.2018.07.013

Pereyre, S., Bénard, C., Bres, C., Le Roy, C., Mauxion, J.-P., Rideau, F., Sirand-Pugnet, P., Henrich, B., Bébéar, C (2018). Generation of Mycoplasma hominis gene-targeted mutants by targeting-induced local lesions in genomes (TILLING). BMC Genomics, 19 (1), 525. , DOI : 10.1186/s12864-018-4917-1

Perraki, A., Gronnier, J., Gouguet, P., Boudsocq, M., Deroubaix, AF., Simon, V., German-Retana, S., Legrand, A., Habenstein, B., Zipfel, C., Bayer, E., Mongrand, S., Germain, V (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS pathogens, 14 (11), e1007378. , DOI : 10.1371/journal.ppat.1007378

Petriacq, P., López, A., Luna, E. (2018). Fruit Decay to Diseases: Can Induced Resistance and Priming Help?. Plants, 7 (4), 77. , DOI : 10.3390/plants7040077

Pirrello, J., Deluche, C., Frangne, N., Gevaudant, F., Maza, E., Djari, A., Bourge, M., Renaudin, J.-P., Brown, Bowler, C., Zouine, M., Chevalier, C., Gonzalez, N. (2018). Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation. Plant Journal, 93, 387-398. DOI : 10.1111/tpj.13783

Rached, M., Baldet, P., Gibon, Y., Matsukura, C., Ariizumi, T., Ezura, Fukuda (2018). Differences in Blossom-end Rot Resistance in Tomato Cultivars is Associated with Total Ascorbate rather than Calcium Concentration in the Distal End Part of Fruits per se. The Horticulture Journal, 87 (3), 372-381. , DOI : 10.2503/hortj.OKD-150

Roques, S., Deborde, C., Richard, N., Sergent, L., Kurz, F., Skiba-Cassy, S., Fauconneau, B., Moing, A. (2018). Characterizing alternative feeds for rainbow trout (O. mykiss) by 1H NMR metabolomics. Metabolomics, 14 (12), 155. , DOI : 10.1007/s11306-018-1454-5

Roques, S., Deborde, C., Richard, N., Skiba-Cassy, S., Moing, A., Fauconneau, B. (2018). Metabolomics and fish nutrition: a review in the context of sustainable feed development. Reviews in Aquaculture, 1-22. , DOI : 10.1111/raq.12316

Roucairol, G., Bitard, P., Andry, F., Bantegnies, E., Bolignano, D., Bordes, A., Bourguignon, P., Chevreuil, M.,  Chinesta, F. , Derras, M., Devauchelle, G., Filipowicz, A., Kamoulakos, A., Kayvantash, K., Kirchner, C., Laumond, J.-P. , Lavignon, J.-F., Lavocat, P., Le Gall, O. , Le Pape, C., Palychata, T. , Picory, C., Plana, R., Requena, S., Znaty, E.  (2018). Pour une politique industrielle du numérique. Paris, France : ANRT-Futuris. 56

Rousseau, E., Tamisier, L., Fabre, F., Simon, V., Szadkowski, M., Bouchez, O., Zanchetta, C., Girardot, G., Mailleret, L., Grognard, F., Palloix, A., Moury, B. (2018). Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants. Molecular Plant Pathology, 19 (12), 2575-2589. , DOI : 10.1111/mpp.12730

Ruiz, D., Egea, J., Salazar, J. A., Campoy, J. A. (2018). Chilling and heat requirements of Japanese plum cultivars for flowering. Scientia Horticulturae, 242, 164-169. , DOI : 10.1016/j.scienta.2018.07.014

Rumbou, A., Candresse, T., Marais, A., Theil, S., Langer, J., Jalkanen, R., Büttner, C (2018). A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease. Plos One, 13 (3), e0193888. , DOI : 10.1371/journal.pone.0193888

Šafářová, D., Candresse, T., Navrátil, M. (2018). Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. Archives of Virology, 163 (2), 567-570. , DOI : 10.1007/s00705-017-3629-1

Šafářová, D., Vavroušková, K., Candresse, T., Navrátil, M (2018). Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.). Plos One, 13 (8), e0200506. , DOI : 10.1371/journal.pone.0200506

Sémétey, O., Gaudin, J., Danet, JL., Salar, P., Theil, S., Fontaine, M., Krausz, M., Chaisse, E., Eveillard, S., Verdin, E., Foissac, X (2018). Lavender decline in France is associated with chronic infection by lavender-specific strain of "Candidatus Phytoplasma solani.". Applied and Environmental Microbiology, 84 (24), 84:e01507-18, DOI : 10.1128/AEM.01507-18

Shinozaki, Y., Ezura, K., Hu, J., Okabe, Y., Benard, C., Prodhomme, D., Gibon, Y., Sun, TP., Ezura, H., Ariizumi, T (2018). Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato. Scientific Reports, 8 (1), 12043. , DOI : 10.1038/s41598-018-30502-w

Schober, D., Jacob, D., Wilson, M., Cruz, JA., Marcu, A., Grant, JR., Moing, A., Deborde, C., de Figueiredo, L. F., Haug, K., Rocca-Serra, P., Easton, J. M., Ebbels, T. M. D., Hao, J., Ludwig, C., Günther, U. L., Rosato, A., Klein, M. S., Lewis, I., Luchinat, C., Jones, A. R., Grauslys, A., Larralde, M., Yokochi, M., Kobayashi, N., Porzel, A., Griffin, J., Viant, M. R., Wishart, DS., Steinbeck, C., Salek, RM., Neumann, S (2018). nmrML: a community supported open data standard for the description, storage, and exchange of NMR data. Analytical Chemistry, 90 (1), 649-656. , DOI : 10.1021/acs.analchem.7b02795

Sorrentino, R., Marais, A., Faure, C., Theil, S., Alioto, D., Candresse, T. (2018). First report of Peach-associated Luteovirus in nectarine (Prunus persica) in Italy. Plant Disease, 102 (7), 1465-1466 , DOI : 10.1094/PDIS-01-18-0012-PDN

Soubeyrand, E., Colombié, S., Beauvoit, B., Dai, Z., Cluzet, S., Hilbert, G., Renaud, C., Maneta-Peyret, L., Dieuaide-Noubhani, M., Mérillon, Gibon, Y., Delrot, S., Gomès, E. (2018). Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation. Frontiers in Plant Science, 9, 1-14. , DOI : 10.3389/fpls.2018.00421

Stevens, R., Baldet, P., Bouchet, J.-P., Causse, M., Deborde, C., Deschodt, C., Faurobert, M., Garchery, C., Garcia, V., Gautier, H., Gouble, B., Maucourt, M., Moing, A., Page, D., Petit, J., Poëssel, J.-L., Truffault, V., Rothan, C. (2018). A systems biology study in tomato fruit reveals correlations between the ascorbate pool and genes involved in ribosome biogenesis, translation, and the heat-shock response. Frontiers in Plant Science, 9 (137), 16 p. DOI : 10.3389/fpls.2018.00137

Svanella-Dumas, L., Marais, A., Faure, C., Theil, S., Lefebvre, M., Candresse, T. (2018). Genome characterization of a divergent isolate of the mycovirus Botrytis virus F from a grapevine metagenome. Archives of Virology, 163, 3181-3183, DOI : 10.1007/s00705-018-3975-7

Svanella-Dumas, L., Theil, S., Barret, M., Candresse, T. (2018). Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish. Archives of Virology, 163 (4), 1097-1100. DOI : 10.1007/s00705-017-3693-6

Svanella-Dumas, L., Τsarmpopoulos, Ι., Marais, A., Theil, S., Faure, C., Gaudin, J., Candresse, T (2018). Complete genome sequence of lettuce chordovirus 1 isolated from cultivated lettuce in France. Archives of virology, 163 (9), 2543–2545, DOI : 10.1007/s00705-018-3858-y

Verdin, E., Marais, A., Wipf-Scheibel, C., Faure, C., Pelletier, B., David, P., Svanella-Dumas, L., Poisblaud, Lecoq, H., Candresse, T.  (2018). Biological and genetic characterization of new and known necroviruses causing an emerging systemic necrosis disease of corn salad (Valerianella locusta L.) in France. Phytopathology, 108,1002-1010. , DOI : 10.1094/PHYTO-08-17-0284-R

Wedeking, R., Maucourt, M., Deborde, C., Moing, A., Gibon, Y., Goldbach, HE., Wimmer, MA (2018). 1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets. Plos One, 13 (5), e0196102. DOI : 10.1371/journal.pone.0196102

Wenden, B., Quero-Garcia, J., Dirlewanger, E., Darbyshire, R. (2018). A comparison of sweet cherry chilling requirements estimated using statistical and biological approaches. Acta Horticulturae, 1229,177-182 . DOI : 10.17660/ActaHortic.2018.1229.27

Williams, A., Petriacq, P., Beerling, D. J., Cotton, T. E. A., Ton, J (2018). Impacts of Atmospheric CO2 and Soil Nutritional Value on Plant Responses to Rhizosphere Colonization by Soil Bacteria. Frontiers in Plant Science, 9, 1493. , DOI : 10.3389/fpls.2018.01493

Xia, Q., Maharajah, P., Cueff, G., Rajjou, L., Prodhomme, D., Gibon, Y., Bailly, C., Corbineau, F., Meimoun, P., El-Maarouf-Bouteau, H (2018). Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination. Plant science : an international journal of experimental plant biology, 269, 118-125. , DOI : 10.1016/j.plantsci.2018.01.014

2017

Aranzana Civit, M. J., Hernandez Mora, J. R., Micheletti, Micali, S., Nazzicari, N., Pacheco, I., Foschi, S., Barreneche, T., Quilot-Turion, B., Wang, L., Ma, R., Li, X., Iglesias, I., Carbó, J., Troggio, M., Banchi, Aramini, Dettori, Caprera, da Silva Linge, C., Pascal, T., Lambert, P., Gao, Verde, Bassi, Rossini, Laurens, F., Arús (2017). Exploring and exploiting phenotypic and genetic diversity in peach: identification of major genes and QTLs by GWAS. Acta Horticulturae, 1172, 419-424.  DOI : 10.17660/ActaHortic.2017.1172.79

Argyris, J. M., Díaz, A., Ruggieri, V., Fernández, M., Jahrmann, T., Gibon, Y., Picó, B., Martín-Hernández, AM., Monforte, A. J., Garcia-Mas, J (2017). QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.). Frontiers in Plant Science, 8, 1679. DOI : 10.3389/fpls.2017.01679

Azizi Gannouni, T., Campoy, J. A., Quero-Garcia, J., Barreneche, T., Arif, A., Albouchi, A., Ammari (2017). Dormancy related traits and adaptation of sweet cherry in Northern Africa: A case of study in two Tunisian areas. Scientia Horticulturae, 219, 272-279. DOI : 10.1016/j.scienta.2017.03.013

Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017). Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening. BMC Plant Biology, 17 (1), 167. DOI : 10.1186/s12870-017-1116-1

Cañas, RA., Yesbergenova-Cuny, Z., Simons, M., Chardon, F., Armengaud, P., Quilleré, I., Cukier, C., Gibon, Y., Limami, AM., Nicolas, S., Brulé, L., Lea, PJ., Maranas, CD., Hirel, B (2017). Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. The Plant Cell, 29 (5), 919-943. DOI : 10.1105/tpc.16.00613

Candresse, T., Faure, C., Theil, S., Beuve, M., Lemaire, O., Spilmont, M., Marais, A. (2017). First Report of Grapevine asteroid mosaic-associated virus Infecting Grapevine (Vitis vinifera) in France. Plant Disease, 101 (6), 1061. DOI : 10.1094/PDIS-01-17-0012-PDN

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Nectarine stem pitting-associated virus Infecting Prunus mume in Japan. Plant Disease, 101 (2), 393. DOI : 10.1094/PDIS-09-16-1323-PDN

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First Report of Plum bark necrosis stem pitting-associated virus Infecting Flowering Cherry in Japan. Plant Disease, 101 (5), 846. DOI : 10.1094/PDIS-09-16-1324-PDN

Candresse, T., Faure, C., Theil, S., Marais, A. (2017). First report of American plum line pattern virus infecting flowering cherry (Prunus serrulata Lindl.) in Japan. Plant Disease, First Look. DOI : 10.1094/PDIS-04-17-0494-PDN

Candresse, T., Faure, C., Theil, S., Spilmont, A.-S., Marais, A. (2017). First report of Grapevine hammerhead viroid-like RNA infecting grapevine (Vitis vinifera L.) in France. Plant Disease, First Look. DOI : 10.1094/PDIS-05-17-0716-PDN

Candresse, T., Marais, A., Theil, S., Faure, C., Lacombe, T., Boursiquot, J.-M. (2017). Complete Nucleotide Sequence of an Isolate of Grapevine Satellite Virus and Evidence for the Presence of Multimeric Forms in an Infected Grapevine. Genome Announcements, 5 (16), e01703-16. DOI : 10.1128/genomeA.01703-16

Carbonell-Bejerano, P., Royo, C., Torres-Pérez, R., Grimplet, J., Fernandez, L., Franco-Zorrilla, J. M., Lijavetzky, D., Baroja, E., Martínez, J., García-Escudero, E., Ibáñez, J., Martínez-Zapater, JM (2017). Catastrophic Unbalanced Genome Rearrangements Cause Somatic Loss of Berry Color in Grapevine. Plant Physiology, 175 (2), 786-801. DOI : 10.1104/pp.17.00715

Chuche, J., Arricau-Bouvery, N., Danet, J.-L., Thiery, D. (2017). Use the insiders: could insect facultative symbionts control vector-borne plant diseases?. Journal of Pest Science, 90 (1), 51-68. DOI : 10.1007/s10340-016-0782-3

Colombié, S., Beauvoit, B., Nazaret, C., Bénard, C., Vercambre, G., Le Gall, S., Biais, B., Cabasson, C., Maucourt, M., Bernillon, S., Moing, A., Dieuaide-Noubhani, M., Mazat, JP., Gibon, Y (2017). Respiration climacteric in tomato fruits elucidated by constraint-based modelling. The New phytologist, 213 (4), 1726-1739. DOI : 10.1111/nph.14301

Deborde, C., Moing, A., Roch, L., Jacob, D., Rolin, D., Giraudeau, P. (2017). Plant metabolism as studied by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy, 102-103, 61-97. DOI : 10.1016/j.pnmrs.2017.05.001

Del Cueto, J., Ionescu, I. A., Pičmanová, M., Gericke, O., Motawia, MS., Olsen, CE., Campoy, J. A., Dicenta, F., Møller, BL., Sánchez-Pérez, R (2017). Cyanogenic Glucosides and Derivatives in Almond and Sweet Cherry Flower Buds from Dormancy to Flowering. Frontiers in Plant Science, 8, 800. DOI : 10.3389/fpls.2017.00800

Denoyes, B., Amaya, I., Liston, A., Tennessen, J., Ashman, T.-L., Whitaker, V., Hytönen, T., van de Weg, E., Osorio, S., Folta, K., Slovin, J., Harrison, R., Monfort, A., Bassil, N. (2017). Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come. Acta Horticulturae, 1156, 13-24. DOI : 10.17660/ActaHortic.2017.1156.3

Dirlewanger, E., Campoy, J. A., Wenden, B., Castede, S., Le Dantec, L., Barreneche, T., Quero-Garcia, J. (2017). Genetic analyses of chilling requirements and flowering date in sweet cherry, two key traits for breeding programs. Acta Horticulturae, 1172, p. 299-306 . DOI : 10.17660/ActaHortic.2017.1172.57

Douliez, J.-P., Martin, N., Gaillard, C., Beneyton, T., Baret, JC., Mann, S., Beven, L. (2017). Catanionic Coacervate Droplets as a Surfactant-Based Membrane-Free Protocell Model. Angewandte Chemie (International Edition), 56 (44), 13689-13693. DOI : 10.1002/anie.201707139

Dubrana, M.-P., Guéguéniat, J., Bertin, C., Duret, S., Arricau-Bouvery, N., Claverol, S., Lartigue, C., Blanchard, A., Renaudin, J., Beven, L. (2017). Proteolytic Post-Translational Processing of Adhesins in a Pathogenic Bacterium. Journal of Molecular Biology, 429 (12), 1889-1902. DOI : 10.1016/j.jmb.2017.05.004

Gao, R., Xu, Y., Candresse, T., He, Z., Li, S., Ma, Y., Lu, M (2017). Further insight into genetic variation and haplotype diversity of Cherry virus A from China. Plos One, 12 (10), e0186273. DOI : 10.1371/journal.pone.0186273

Gimeno, T. E., Ogée, J., Royles, J., Gibon, Y., West, J. B., Burlett, R., Jones, S. P., Sauze, J., Wohl, S., Benard, C., Genty, B., Wingate, L. (2017). Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light. The New Phytologist, 215 (3), 965-976. DOI : 10.1111/nph.14584

Glasa, M., Soltys, K., Vozarova, L., Predajna, L., Sihelska, N., Subr, Z., Candresse, T. (2017). High intra-host Cherry virus A population heterogeneity in cherry trees in Slovakia. Journal of Plant Pathology, 99 (3), 745-752. DOI : 10.4454/jpp.v99i3.3947

Goret, J., Beven, L., Faustin, B., Contin-Bordes, C., Le Roy, C., Claverol, S., Renaudin, H., Bébéar, C., Pereyre, S (2017). Interaction of Mycoplasma hominis PG21 with human dendritic cells: IL-23-inducing mycoplasmal lipoproteins and inflammasome activation of the cell. Journal of Bacteriology, 199 (15), e00213-17. DOI : 10.1128/JB.00213-17

Grisoni, M., Marais, A., Filloux, D., Saison, A., Faure, C., Julian, C., Theil, S., Contreras, S., Teycheney, P.-Y., Roumagnac, P., Candresse, T. (2017). Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Archives of Virology, 162, 3855-3861. DOI : 10.1007/s00705-017-3540-9

Hernández Mora, J., Micheletti, D., Bink, M., Van de Weg, W., Bassi, D., Nazzicari, N., Caprera, Dettori, M., Micali, Dirlewanger, E., Lambert, P., Pascal, T., Banchi, Troggio, Rossini, Verde, Quilot-Turion, B., Laurens, F., Arús, Aranzana (2017). Discovering peach QTLs with multiple progeny analysis. Acta Horticulturae, 1172, 405-410. DOI : 10.17660/ActaHortic.2017.1172.77

Hernández Mora, J. R., Micheletti, D., Bink, M., Van de Weg, E., Cantín, C., Nazzicari, N., Caprera, A., Dettori, M. T., Micali, Banchi, Campoy, J. A., Dirlewanger, E., Lambert, P., Pascal, T., Troggio, Bassi, D., Rossini, L., Verde, Quilot-Turion, B., Laurens, F., Arus, P., Aranzana (2017). Integrated QTL detection for key breeding traits in multiple peach progenies. BMC Genomics, 18 (1). DOI : 10.1186/s12864-017-3783-6

Huang, H., Nguyen Thi Thu, T., He, X., Gravot, A., Bernillon, S., Ballini, E., Morel, J.-B. (2017). Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast. Frontiers in Plant Science, 8, 265. DOI : 10.3389/fpls.2017.00265

Jacob, D., Deborde, C., Lefebvre, M., Maucourt, M., Moing, A. (2017). NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics, 13 (4), 36. DOI : 10.1007/s11306-017-1178-y

Jiang, J., Zhang, Z., Hu, B., Hu, G., Wang, H., Faure, C., Marais, A., Candresse, T., Li, S (2017). Identification of a viroid-like RNA in a lychee Transcriptome Shotgun Assembly. Virus Research, 240, 1-7. DOI : 10.1016/j.virusres.2017.07.012

Lalanne-Tisne, G., Quero-Garcia, J., Lafargue, M.-D.-D., Joly, J., Fouilhaux, L., Dirlewanger, E., Costes, E., Legave, J.-M. (2017). Comparison of phenotypic methodologies to characterize chilling and heat requirements of peach and apple cultivars. Acta Horticulturae, 1172, 349-354. DOI : 10.17660/ActaHortic.2017.1172.65

Lamichhane, J. R. ,Arseniuk, E., Boonekamp, P., Czembor, J., Decroocq, V., Enjalbert, J., Finckh, M. R., Korbin , M., Koppel , M., Kudsk, P., Mesterhazy , A., Sosnowska, D., Zimnoch-Guzowska , E., Messean, A. (2017). Advocating a need for suitable breeding approaches to boost Integrated Pest Management: A European perspective. Pest Management Science, 28 p.  DOI : 10.1002/ps.4818

Le Signor, C., Aime, D., Bordat, A., Belghazi, M., Labas, V., Gouzy, J., Young, N. D., Prosperi, J.-M., Leprince, O., Thompson, R., Buitink, J., Burstin, J., Gallardo-Guerrero, K. (2017). Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds. New Phytologist, 214,1597-1613. DOI : 10.1111/nph.14500

Luchaire, N., Rienth, M., Romieu, C., Nehe, A., Chatbanyong, R., Houel, C., Ageorges, A., Gibon, Y., Turc, O., Muller, B., Torregrosa, L., Pellegrino, A. (2017). Microvine: A New Model to Study Grapevine Growth and Developmental Patterns and their Responses to Elevated Temperature. American Journal of Enology and Viticulture, ajev.2017.16066. DOI : 10.5344/ajev.2017.16066

Marais, A., Nivault, A., Faure, C., Theil, S., Comont, G., Candresse, T., Corio-Costet, MF (2017). Determination of the complete genomic sequence of Neofusicoccum luteum mitovirus 1 (NLMV1), a novel mitovirus associated with a phytopathogenic Botryosphaeriaceae. Archives of Virology, 162 (8), 2477-2480. DOI : 10.1007/s00705-017-3338-9

Martineau, E., Domec, J.-C., Bosc, A., Dannoura, M., Gibon, Y., Benard, C., Jordan-Meille, L. (2017). The role of potassium on maize leaf carbon exportation under drought condition. Acta Physiologiae Plantarum, 39 (10), 219. DOI : 10.1007/s11738-017-2515-5

Massart, S., Candresse, T., Gil, J., Lacomme, C., Predajna, L., Ravnikar, M., Reynard, J.S., Rumbou, A., Saldarelli, P., Škorić, D., Vainio, E.J., Valkonen, J.P.T., Vanderschuren, H., Varveri, C., Wetzel, T. (2017). A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies. Front. Microbiol. 8, 45. doi: 10.3389/fmicb.2017.00045

Mathelié-Guinlet, M., Beven, L., Moroté, F., Moynet, D., Grauby-Heywang, C., Gammoudi, I., Delville, M.-H., Cohen-Bouhacina, T. (2017). Probing the threshold of membrane damage and cytotoxicity effects induced by silica nanoparticles in Escherichia coli bacteria. Advances in Colloid and Interface Science, 245, 81-91. DOI : 10.1016/j.cis.2017.04.012

Moussu, S., Doll, N., Chamot, S., Brocard, L., Creff, A., Fourquin, C., Widiez, T., Nimchuk, Z. L., Ingram, G. (2017). ZHOUPI and KERBEROS mediate embryo/endosperm separation by promoting the formation of an extracuticular sheath at the embryo surface. Plant Cell, 29 (7), 1642-1656. DOI : 10.1105/tpc.17.00016

Musseau, C., Just, D., Jorly, J., Gevaudant, F., Moing, A., Chevalier, C., Lemaire-Chamley, M., Rothan, C., Fernandez, L. (2017). Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato. Frontiers in Plant Science, 8. DOI : 10.3389/fpls.2017.00988

Nicaise, V., Candresse, T. (2017). Plum pox virus capsid protein suppresses plant pamp-triggered immunity. Molecular Plant Pathology, 18 (6), 878-886. DOI : 10.1111/mpp.12447

Nicolas, W. J., Grison, Trépout, Gaston, A., Fouche, M., Cordelières, F. P., Oparka, K., Tilsner, J., Brocard, L., Bayer (2017). Architecture and permeability of post-cytokinesis plasmodesmata lacking cytoplasmic sleeves. Nature Plants, 3 (7), 17082. DOI : 10.1038/nplants.2017.82

Omena-Garcia, R. P., Araújo, WL., Gibon, Y., Fernie, A. R., Nunes-Nesi, A (2017). Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants. Methods in Molecular Biology, 1670, 167-182. DOI : 10.1007/978-1-4939-7292-0_14

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Miguel, S., BITEAU, F., Mignard, B., Marais, A., Candresse, T., Theil, S., Bourgaud, F., Hehn, A. (2016). Beet western yellows virus infects the carnivorous plant Nepenthes mirabilis. Archives of virology, 161, 2273-2278. DOI : 10.1007/s00705-016-2891-y

Mounet-Gilbert, L., Dumont, M., Ferrand, C., Bournonville, C., Monier, A., Jorly, J., Lemaire-Chamley, M., Mori, K., Atienza, I., Hernould, M., Stevens, R., Lehner, A., Mollet, J.-C., Rothan, C., Lerouge, P., Baldet, P. (2016). Two tomato GDP-D-mannose epimerase isoforms involve in ascorbate biosynthesis play specific roles in cell wall biosynthesis and development. Journal of Experimental Botany, 67 (15), 4767-4777. DOI : 10.1093/jxb/erw260

Oury, V., Caldeira, C. F., Prodhomme, D., Pichon, J.-P., Gibon, Y., Tardieu, F., Turc, O. (2016). Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering?. Plant Physiology, 71 (2), 997-1008. DOI : 10.1104/pp.15.01130

Peralta, D. A., Araya, A., Busi, M. V., Gomez-Casati, D. F. (2016). The E3 ubiquitin-ligase SEVEN IN ABSENTIA like 7 mono-ubiquitinates glyceraldehyde-3-phosphate dehydrogenase 1 isoform in vitro and is required for its nuclear localization in Arabidopsis thaliana. The international journal of biochemistry & cell biology, 70, 48-56. DOI : 10.1016/j.biocel.2015.11.007

Perpiñá, G., Esteras, C., Gibon, Y., Monforte, A. J., Picó, B (2016). A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits. BMC plant biology, 16 (1), 154. DOI : 10.1186/s12870-016-0842-0

Perrotte, J., Gaston, A., Potier, A., Petit, A., Rothan, C., Denoyes-Rothan, B. (2016). Narrowing down the single homoeologous FaPFRU locus controlling flowering in cultivated octoploid strawberry using a selective mapping strategy. Plant Biotechnology Journal, 14 (11), 2176-2182 . DOI : 10.1111/pbi.12574

Perrotte, J., Guédon, Y., Gaston, A., Denoyes, B. (2016). Identification of successive flowering phases highlights a new genetic control of the flowering pattern in strawberry. Journal of experimental botany, 67 (19), 5643-5655. DOI : 10.1093/jxb/erw326

Petit, J., Bres, C., Mauxion, J.-P., Wong Jun Tai, V., Martin, L. B. B., Fich, E. A., Joubès, J., Rose, J. K. C., Domergue, F., Rothan, C. (2016). The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis. Plant Physiology, 171 (2), 894-913. DOI : 10.1104/pp.16.00409

Philippe, G., Gaillard, C., Petit, J., Geneix, N., Dalgalarrondo, M., Bres, C., Mauxion, J.-P., Franke, R., Rothan, C., Schreiber, L., Marion, D., Jamin Bakan, B. (2016). . Ester-crosslink Profiling of the Cutin Polymer of Wild Type and Cutin Synthase Tomato (Solanum lycopersicum L.) Mutants Highlights Different Mechanisms of Polymerization. Plant physiology, 170 (2), 807-820. DOI : 10.1104/pp.15.01620

Rothan, C., Just, D., Fernandez, L., Atienza, I., Ballias, P., Lemaire-Chamley, M. (2016). . Culture of the Tomato Micro-Tom Cultivar in Greenhouse. Methods in molecular biology (Clifton, N.J.), 1363, 57-64. DOI : 10.1007/978-1-4939-3115-6_6

Salazar, J. A., Ruiz, D., Campoy, J. A., Tartarini, S., Dondini, L., Martínez-Gómez, P. (2016). Inheritance of reproductive phenology traits and related QTL identification in apricot. Tree Genetics and Genomes, 12 (4), 71. DOI : 10.1007/s11295-016-1027-6

Schieck, E., Lartigue, C., Frey, J., Vozza, N., Hegermann, J., Miller, R. A., Valguarnera, E., Muriuki, C., Meens, J., Nene, V., Naessens, J., Weber, J., Lowary, T. L., Vashee, S., Feldman, M. F., Jores, J. (2016). . Galactofuranose in Mycoplasma mycoides is important for membrane integrity and conceals adhesins but does not contribute to serum resistance. Molecular microbiology, 99 (1), 55-70. DOI : 10.1111/mmi.13213

Scorza, R., Ravelonandro, M., Callahan, A., Zagrai, I., Polak, J., Malinowski, T., Cambra, M., Levy, L., Damsteegt, V., Krska, B., Cordts, J., Gonsalves, D., Dardick, C. (2016). ‘HoneySweet’ (C5), the First Genetically Engineered Plum pox virus–resistant Plum (Prunus domestica L.) Cultivar. Hortscience, 51 (5), 601-603.

Svanella-Dumas, L., Marais, A., Faure, C., Theil, S., Thibord, J. B., Candresse, T. (2016). Complete Nucleotide Sequence of a French Isolate of Maize rough dwarf virus, a Fijivirus Member in the Family Reoviridae. Genome announcements, 4 (4), e00623-16. DOI : 10.1128/genomeA.00623-16

Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V. (2016). Bread wheat (Triticum aestivum L.) grain protein concentration is related to early post-flowering nitrate uptake under putative control of plant satiety level. Plos One, 11 (2). DOI : 10.1371/journal.pone.0149668

Toubiana, D., Xue, W., Zhang, N., Kremling, K., Gur, A., Pilosof, S., Gibon, Y., Stitt, M., Buckler, E. S., Fernie, A. R., Fait, A. (2016). Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in plant science, 7, 1022. DOI : 10.3389/fpls.2016.01022

Tsarmpopoulos, I., Gourgues, G., Blanchard, A., Vashee, S., Jores, J., Lartigue, C., Sirand-Pugnet, P. (2016). . In-Yeast Engineering of a Bacterial Genome Using CRISPR/Cas9. ACS synthetic biology, 5 (1), 104-109. DOI : 10.1021/acssynbio.5b00196

Verdu, C. F., Guichoux, E., Quevauvillers, S., De Thier, O., Laizet, Y., Delcamp, A., Gevaudant, F., Monty, A., Porte, A., Lejeune, P., Lassois, L., Mariette, S. (2016). Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacaciaL. Ecology and Evolution, 6 (20), 7323-7333. DOI : 10.1002/ece3.2466

Wenden, B., Campoy, J. A., Lecourt, J., López Ortega, G., Blanke, M., Radičević, S., Schüller, E., Spornberger, A., Christen, D., Magein, H., Giovannini, D., Campillo, C., Malchev, S., Peris, J. M., Meland, M., Stehr, R., Charlot, G., Quero-Garcia, J. (2016). A collection of European sweet cherry phenology data for assessing climate change. Scientific data, 3, 160108. DOI : 10.1038/sdata.2016.108

Yacoub, E., Sirand-Pugnet, P., Barré, A., Blanchard, A., Hubert, C., Maurier, F., Bouilhol, E., Ben Abdelmoumen Mardassi, B. (2016). Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum. Genome announcements, 4 (3). DOI : 10.1128/genomeA.00558-16

2015

Arnould, A., Perez, AA., Gaillard, C., Douliez, J.-P., Cousin, F., Santiago, LG., Zemb, T., Anton, M., Fameau, AL (2015). Self-assembly of myristic acid in the presence of choline hydroxide: Effect of molar ratio and temperature. Journal of colloid and interface science, 445C, 285-293. DOI : 10.1016/j.jcis.2015.01.008

Azzi, L., Deluche, C., Gévaudant, F., Frangne, N., Delmas, F., Hernould, M., Chevalier, C. (2015). Fruit growth-related genes in tomato. Journal of experimental botany, 66 (4), 1075-86. DOI : 10.1093/jxb/eru527

Baldacci-Cresp, F., Maucourt, M., Deborde, C., Pierre, O., Moing, A., Brouquisse, R., Favery, B., Frendo, P. (2015). Maturation of nematode-induced galls in Medicago truncatula is related to water status and primary metabolism modifications. Plant science : an international journal of experimental plant biology, 232, 77-85. DOI : 10.1016/j.plantsci.2014.12.019

Bassil, NV., Davis, TM., Zhang, H., Ficklin, S., Mittmann, M., Webster, T., Mahoney, L., Wood, D., Alperin, ES., Rosyara, UR., Koehorst-Vanc Putten, H., Monfort, A., Sargent, DJ., Amaya, I., Denoyes, B., Bianco, L., van Dijk, T., Pirani, A., Iezzoni, A., Main, D., Peace, C., Yang, Y., Whitaker, V., Verma, S., Bellon, L., Brew, F., Herrera, R., van de Weg, E (2015). Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC genomics, 16, 155. DOI : 10.1186/s12864-015-1310-1

Bénard, C., Bernillon, S., Biais, B., Osorio, S., Maucourt, M., Ballias, P., Deborde, C., Colombié, S., Cabasson, C., Jacob, D., Vercambre, G., Gautier, H., Rolin, D., Génard, M., Fernie, AR., Gibon, Y., Moing, A (2015). Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of experimental botany, 66 (11), 3391-404. DOI : 10.1093/jxb/erv151

Besong-Ndika, J., Ivanov, K. I., Hafrèn, A., Michon, T., Mäkinen, K. (2015). Cotranslational coat protein-mediated inhibition of potyviral RNA translation. Journal of virology, 89 (8), 4237-48. DOI : 10.1128/JVI.02915-14

Bertin, C., Pau-Roblot, C., Courtois, J., Manso-Silvan, L., Tardy, F., Poumarat, F., Citti, C., Sirand-Pugnet, P., Gaurivaud, P., Thiaucourt, F. (2015). Highly dynamic genomic loci drive the synthesis of two types of capsular or secreted polysaccharides within the "Mycoplasma mycoides" cluster.Applied and Environmental Microbiology, 81 (2), 676-687. DOI : 10.1128/AEM.02892-14

Beuve, M., Candresse, T., Tannieres, M., Lemaire, O. (2015). First Report of Grapevine redglobe virus (GRGV) in Grapevine in France. Plant Disease, 99 (3), 422-422. DOI : 10.1094/PDIS-10-14-1009-PDN

Beuve, M., Candresse, T., Tannieres, M., Lemaire, O. (2015). First Report of Grapevine Pinot gris virus (GPGV) in grapevine in France. Plant Disease, 99 (2), 293. DOI : 10.1094/PDIS-10-14-1008-PDN

Bordat, A., Houvenaghel, M.-C., German-Retana, S. (2015). Gibson assembly : an easy way to clone potyviral full-length infectious cDNA clones ex pressing an ectopic VPg. Virology Journal, 12, 89. DOI : 10.1186/s12985-015-0315-3

Campoy, J. A., Le Dantec, L., Barreneche, T., Dirlewanger, E., Quero-Garcia, J. (2015). New insights into fruit firmness and weight control in sweet cherry. Plant Molecular Biology Reporter, 33 (4), 783-796. DOI : 10.1007/s11105-014-0773-6

Castede, S., Campoy, J. A., Le Dantec, L., Quero-Garcia, J., Barreneche, T., Wenden, B., Dirlewanger, E. (2015). Mapping of Candidate Genes Involved in Bud Dormancy and Flowering Time in Sweet Cherry (Prunus avium). PloS one, 10 (11), e0143250. DOI : 10.1371/journal.pone.0143250

Cayla, T., Batailler, B., LE HIR, R., Revers, F., Anstead, J. A., Thompson, G. A., Grandjean, O., Dinant, S. (2015). Live imaging of companion cells and sieve elements in Arabidopsis leaves. PloS one, 10 (2), e0118122. DOI : 10.1371/journal.pone.0118122

Chen, W., Kong, J., Qin, C., Yu, S., Tan, J., Chen, YR., Wu, C., Wang, H., Shi, Y., Li, C., Li, B., Zhang, P., Wang, Y., Lai, T., Yu, Z., Zhang, X., Shi, N., Wang, H., Osman, T., Liu, Y., Manning, K., Jackson, S., Rolin, D., Zhong, S., Seymour, GB., Gallusci, P., Hong, Y (2015). Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening. Scientific reports, 5, 9192. DOI : 10.1038/srep09192

Chen, W., Kong, J., Lai, T., Manning, K., Wu, C., Wang, Y., Qin, C., Li, B., Yu, Z., Zhang, X., He, M., Zhang, P., Gu, M., Yang, X., Mahammed, A., Li, C., Osman, T., Shi, N., Wang, H., Jackson, S., Liu, Y., Gallusci, P., Hong, Y (2015). Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening. Scientific reports, 5, 7852. DOI : 10.1038/srep07852

Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., de Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J., Millar, A. J. (2015). Correction for Chew et al., Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America, 112 (19), E2556. , DOI : 10.1073/pnas.1506983112

Colombié, S., Nazaret, C., Benard, C., Biais, B., Mengin, V., Sole, M., Fouillen, L., Dieuaide Noubhani, M., Mazat, J.-P., Beauvoit, B., Gibon, Y. (2015). Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit. The Plant journal : for cell and molecular biology, 81 (1), 24-39. DOI : 10.1111/tpj.12685

Dai, Z., Plessis, A., Vincent, J., Duchateau, N., Besson, A., Dardevet, M., Prodhomme, D., Gibon, Y., Hilbert, G., Pailloux, M., Ravel, C., Martre, P (2015). Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply. The Plant journal : for cell and molecular biology. DOI : 10.1111/tpj.12881

Dumez, J.-N., Milani, J., Vuichoud, B., Bornet, A., Lalande-Martin, J., Tea, I., Yon, M., Maucourt, M., Deborde, C., Moing, A., Frydman, L., Bodenhausen, G., Jannin, S., Giraudeau, P. (2015). Hyperpolarized NMR of plant and cancer cell extracts at natural abundance. The Analyst, 140 (17), 5860-3. DOI : 10.1039/c5an01203a

Eveillard, S., Ahmad, J. N., Renaudin, J. (2015). Molecular study of the effect of exogenous phytohormones application in “stolbur” phytoplasma infected tomatoes on disease development. Phytopathogenic Mollicutes, 5 (1-suppl), S121-S122.

Foucher, F., Hibrand-Saint Oyant, L., Hamama, L., Sakr, S., Nybom, H., Baudino, S., Caissard, J., Byrne, D., Smulder, J., Denoyes, B., Debener, T., Bruneau, A., De Riek, J., Matsumoto, S., Torres, A., Millan, T., Amaya, I., Yamada, K., Wincker, P., Zamir, D., Gouzy, J., Sargent, D., Bendahmane, M., Raymond, O., Vergne, P., Dubois, A., Just, D. (2015). Towards the Rose Genome Sequence and Its Use in Research and Breeding. Acta Horticulturae (1064), 167-175. DOI : 10.17660/ActaHortic.2015.1064.19

Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., Duperier, C., Tremblay-Franco, M., Martin, JF., Jacob, D., Goulitquer, S., Thévenot, EA., Caron, C (2015). Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 31 (9), 1493-5. DOI : 10.1093/bioinformatics/btu813

Grevenstuk, T., Moing, A., Maucourt, M., Deborde, C., Romano, A. (2015). Aluminium stress disrupts metabolic performance of Plantago almogravensis plantlets transiently. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 28 (6), 997-1007. DOI : 10.1007/s10534-015-9884-2

Hédiji, H., Djebali, W., Belkadhi, A., Cabasson, C., Moing, A., Rolin, D., Brouquisse, R., Gallusci, P., Chaïbi, W. (2015). Impact of long-term cadmium exposure on mineral content of Solanum lycopersicum plants: Consequences on fruit production. South African Journal of Botany, 97, 176-181. DOI : 0.1016/j.sajb.2015.01.010

How-Kit, A., Daunay, A., Mazaleyrat, N., Busato, F., Daviaud, C., Teyssier, E., Deleuze, J.-F., Gallusci, P., Tost, J. (2015). Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants. Plant Molecular Biology, 88 (4), 471-485. DOI : 10.1007/s11103-015-0336-8

Jézéquel, T., Deborde, C., Maucourt, M., Zhendre, V., Moing, A., Giraudeau, P. (2015). Absolute quantification of metabolites in tomato fruit extracts by fast 2D NMR. Metabolomics, 11 (5), 1131-1142. DOI : 10.1007/s11306-015-0780-0

Julio, E., Cotucheau, J., Decorps, C., Volpatti, R., Sentenac, C., Candresse, T., Dorlhac de Borne, F. (2015). A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Molecular Biology Reporter, 33 (3), 609-623. DOI : 10.1007/s11105-014-0775-4

Khozaei, M., Fisk, S., Lawson, T., Gibon, Y., Sulpice, R., Stitt, M., Lefebvre, SC., Raines, CA (2015). Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype. The Plant cell, 27 (2), 432-47. DOI : 10.1105/tpc.114.131011

Liu, R., How-Kit, A., Stammitti, L., Teyssier, E., Rolin, D., Mortain-Bertrand, A., Halle, S., Liu, M., Kong, J., Wu, C., Degraeve-Guilbault, C., Chapman, N. H., Maucourt, M., Hodgman, T. C., Tost, J., Bouzayen, M., Hong, Y., Seymour, G. B., Giovannoni, J. J., Gallusci, P. (2015). A DEMETER-like DNA demethylase governs tomato fruit ripening. Proceedings of the National Academy of Sciences of the United States of America, 112 (34), 10804-9. DOI : 10.1073/pnas.1503362112

Maliogka, VI., Olmos, A., Pappi, PG., Lotos, L., Efthimiou, K., Grammatikaki, G., Candresse, T., Katis, NI., Avgelis, AD (2015). A novel grapevine badnavirus is associated with the Roditis leaf discoloration disease. Virus research, 203, 47-55. DOI : 10.1016/j.virusres.2015.03.003

Marais, A., Faure, C., Mustafayev, E., Candresse, T. (2015). Characterization of new isolates of apricot vein clearing-associated virus and of a new prunus-infecting virus: Evidence for recombination as a driving force in Betaflexiviridae evolution. Plos One, 10 (6). DOI : 10.1371/journal.pone.0129469

Marais, A., Faure, C., Mustafayev, E., Barone, M., Alioto, D., Candresse, T. (2015). Characterization by Deep Sequencing of Prunus virus T, a Novel Tepovirus Infecting Prunus Species. Phytopathology, 105 (1), 135-140. DOI : 10.1094/PHYTO-04-14-0125-R

Martin, J.-C., Maillot, M., Mazerolles, G., Verdu, A., Lyan, B., Migné, C., Defoort, C., Canlet, C., Junot, C., Guillou, C., Manach, C., Jacob, D., Jouan Rimbaud Bouveresse, D., Paris, E., Pujos-Guillot, E., Jourdan, F., Giacomoni, F., Courant, F., Fave, G., Le Gall, G., Chassaigne, H., Tabet, J.-C., Martin, J.-F., Antignac, J.-P., Shintu, L., Defernez, M., Philo, M., Alexandre Gouaubau, M.-C., Amiot, M. J., Bossis, M., Triba, M., Stojilkovic, N., Banzet, N., Molinié, R. ., Bott, R., Goulitquer, S., Caldarelli, S., Rutledge, D. (2015). Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study. Metabolomics, 11 (4), 807-821. DOI : 10.1007/s11306-014-0740-0

Micheletti, D., Dettori, M. T., Micali, S., Aramini, V., Pacheco, I., da Silva Linge, C., Foschi, S., Banchi, E., Barreneche, T., Quilot-Turion, B., Lambert, P., Pascal, T., Ignasi, I., Carbo, J., Wang, L.-R., Ma, R.-J., Li, X., Gao, Z.-S., Nazzicari, N., Troggio, M., Bassi, D., Rossini, L., Verde, I., Laurens, F., Arús, P., Aranzana, M. J. (2015). Whole-genome analysis of diversity and SNP-major gene association in peach germplasm. Plos One, 10 (9), 19 p. DOI : 10.1371/journal.pone.0136803

Minutillo, SA., Marais, A., Mascia, T., Faure, C., Svanella-Dumas, L., Theil, S., Payet, A., Perennec, S., Schoen, L., Gallitelli, D., Candresse, T. (2015). Complete nucleotide sequence of Artichoke latent virus shows it to be a member of the genus Macluravirus in the family Potyviridae. Phytopathology. DOI : 10.1094/PHYTO-01-15-0010-R

Nault, L., Taofifenua, C., Anne, A., Chovin, A., Demaille, C., Besong-Ndika, J., Cardinale, D., Carette, N., Michon, T. and , Walter, J. (2015). Electrochemical Atomic Force Microscopy Imaging of Redox-Immunomarked Proteins on Native Potyviruses: From Subparticle to Single-Protein Resolution. ACS Nano. doi:10.1021/acsnano.5b00952

Nelson, W. R., Eveillard, S., Dubrana, M.-P., Bove, J. (2015). Cryptic haplotypes of "Candidatus Liberibacter africanus". Journal of Plant Pathology, 97 (2), 291-295.

Nicaise, V. (2015). Lost in Translation: An Antiviral Plant Defense Mechanism Revealed. Cell Host & Microbe, 17 (4), 417-419. DOI : 10.1016/j.chom.2015.03.009

Oustric, J., Antoine, S., Giannettini, J., Gibon, Y., Luro, F., Berti, L., Santini, J. (2015). Biochemical characterization of the primary metabolism and antioxidant defense systems of acidic and acidless citrus genotypes during the major stages of fruit growth. Acta Physiologiae Plantarum, 37 (11), 13 p. DOI : 10.1007/s11738-015-1982-9

Paredes, JC., Herren, JK., Schüpfer, F., Marin, R., Claverol, S., Kuo, CH., Lemaitre, B., Béven, L (2015). Genome sequence of the Drosophila melanogaster male-killing Spiroplasma strain MSRO endosymbiont. mBio, 6 (2). DOI : 10.1128/mBio.02437-14

Popova, AV., Rausch, S., Hundertmark, M., Gibon, Y., Hincha, DK (2015). The intrinsically disordered protein LEA7 from Arabidopsis thaliana protects the isolated enzyme lactate dehydrogenase and enzymes in a soluble leaf proteome during freezing and drying. Biochimica et biophysica acta. DOI : 10.1016/j.bbapap.2015.05.002

Poque, A., Pagny, G., Ouibrahim, L., Chague, A., Eyquard, J.-P., Caballero, M., Candresse, T., Caranta, C., Mariette, S., Decroocq, V. (2015). Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana. BMC Plant Biology, 15 (159), 1-14. DOI : 10.1186/s12870-015-0559-5

Quentin, A. G., Pinkard, E. A., Ryan, M. G., Tissue, D. T., Baggett, L. S., Adams, H. D., Maillard, P., Marchand, J., Landhäusser, S. M., Lacointe, A., Gibon, Y., Anderegg, W. R., Asao, S., Atkin, O. K., Bonhomme, M., Claye, C., Chow, P. S., Clement-Vidal, A., Davies, N. W., Dickman, L. T., Dumbur, R., Ellsworth, D. S., Falk, K., Galiano, L., Grünzweig, J. M., Hartmann, H., Hoch, G., Hood, S., Jones, J. E., Koike, T., Kuhlmann, I., Lloret, F., Maestro, M., Mansfield, S. D., Martínez-Vilalta, J., Maucourt, M., McDowell, N. G., Moing, A., Muller, B., Nebauer, S. G., Niinemets, Ü., Palacio, S., Piper, F., Raveh, E., Richter, A., Rolland, G., Rosas, T., Saint Joanis, B., Sala, A., Smith, R. A., Sterck, F., Stinziano, J. R., Tobias, M., Unda, F., Watanabe, M., Way, D. A., Weerasinghe, L. K., Wild, B., Wiley, E., Woodruff, D. R. (2015). Non-structural carbohydrates in woody plants compared among laboratories. Tree Physiology, 35 (11), 1146-1165. DOI : 10.1093/treephys/tpv073

Rebolledo, MC., Dingkuhn, M., Courtois, B., Gibon, Y., Clément-Vidal, A., Cruz, DF., Duitama, J., Lorieux, M., Luquet, D (2015). Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Journal of experimental botany. DOI : 10.1093/jxb/erv258

Renaudin, J., Beven, L., Batailler, B., Duret, S., Desque, D., Arricau-Bouvery, N., Malembic-Maher, S., Foissac, X. (2015). Heterologous expression and processing of the flavescence dorée phytoplasma variable membrane protein VmpA in Spiroplasma citri. BMC Microbiology, 15, 82. DOI : 10.1186/s12866-015-0417-5

Rimbaud, L., Dallot, S., Gottwald, T., Decroocq, V., Jacquot, E., Soubeyrand, S., Thébaud, G. (2015). Sharka Epidemiology and Worldwide Management Strategies: Learning Lessons to Optimize Disease Control in Perennial Plants. Annual Review of Phytopathology, 53, 357-378. DOI : 10.1146/annurev-phyto-080614-120140

Rodriguez-Medina, C., Boissinot, S., Chapuis, S., Gereige, D., Rastegar, M., Erdinger, M., Revers, F., Ziegler-Graff, V., Brault, V. (2015). A protein kinase binds the C-terminal domain of the readthrough protein of Turnip yellows virus and regulates virus accumulation. Virology, 486, 44-53. DOI : 10.1016/j.virol.2015.08.031

Rubio, M., Rodríguez-Moreno, L., Ballester, A. R., Castro de Moura, M., Bonghi, C., Candresse, T., Martínez-Gómez, P. (2015). Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq. Molecular plant pathology, 16 (2), 164-176. DOI : 10.1111/mpp.12169

Saladié, M., Cañizares, J., Phillips, M. A., Rodriguez-Concepcion, M., Larrigaudière, C., Gibon, Y., Stitt, M., Lunn, J. E., Garcia-Mas, J. (2015). Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties. BMC Genomics, 16, 440. DOI : 10.1186/s12864-015-1649-3

Salek, R., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., Correa, E., Reijmers, T., Rosato, A., Tenori, L., Turano, P., Marin, S., Deborde, C., Jacob, D., Rolin, D., Dartigues, B., Conesa, P., Haug, K., Rocca-Serra, P., O’Hagan, S., Hao, J., Vliet, M. v., Sysi-Aho, M., Ludwig, C., Bouwman, J., Cascante, M., Ebbels, T., Griffin, J. L., Moing, A., Nikolski, M., Oresic, M., Sansone, S.-A., Viant, M. R., Goodacre, R., Günther, U. L., Hankemeier, T., Luchinat, C., Walther, D., Steinbeck, C. (2015). COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics, 11, 1587–1597 . DOI : 10.1007/s11306-015-0810-y

Sánchez-Sevilla, JF., Horvath, A., Botella, MA., Gaston, A., Folta, K., Kilian, A., Denoyes, B., Amaya, I (2015). Diversity Arrays Technology (DArT) Marker Platforms for Diversity Analysis and Linkage Mapping in a Complex Crop, the Octoploid Cultivated Strawberry (Fragaria × ananassa). PloS one, 10 (12), e0144960. DOI : 10.1371/journal.pone.0144960

Soueidan, H., Schmitt, L.-A., Candresse, T., Nikolski, M. (2015). Finding and identifying the viral needle in the metagenomic haystack: trends and challenges. Frontiers in microbiology, 5, 1-7. DOI : 10.3389/fmicb.2014.00739

Svanella-Dumas, L., Candresse, T., Maurice, I., Blin, V., Quaren, R., Birgaentzle, C. (2015). First Report of the Presence of Plum pox virus Rec Strain in France. Plant Disease, 99 (3), 421-421. DOI : 10.1094/PDIS-07-14-0763-PDN

Tardy, F., Mick, V., Dordet-Frisoni, E., Marenda, M., Sirand-Pugnet, P., Blanchard, A., Citti, C. (2015). Integrative conjugative elements (ICEs) are widespread in field isolates of Mycoplasma species pathogenic for ruminants. Applied and environmental microbiology, 81 (5), 1634-1643. DOI : 10.1128/AEM.03723-14

Taulemesse, F., Le Gouis, J., Gouache, D., Gibon, Y., Allard, V (2015). Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1. PloS one, 10 (3), e0120291. DOI : 10.1371/journal.pone.0120291

Thébault, P., Bourqui, R., Benchimol, W., Gaspin, C., Sirand-Pugnet, P., Uricaru, R., Dutour, I. (2015). Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. Briefings in bioinformatics, 16 (5), 795-805. DOI : 10.1093/bib/bbu045

Touati, A., Blouin, Y., Sirand-Pugnet, P., Renaudin, H., Oishi, T., Vergnaud, G., Bébéar, C., Pereyre, S. (2015). Molecular epidemiology of Mycoplasma pneumoniae: genotyping using single nucleotide polymorphisms and SNaPshot™ technology. Journal of Clinical Microbiology, 53 (10), 3182-3194. DOI : 10.1128/JCM.01156-15

Yacoub, E., Sirand-Pugnet, P., Blanchard, A., Ben Abdelmoumen Mardassi, B (2015). Genome Sequence of Mycoplasma meleagridis Type Strain 17529. Genome announcements, 3 (3). DOI : 10.1128/genomeA.00484-15

Zhang, N., Gibon, Y., Wallace, JG., Lepak, N., Li, P., Dedow, L., Chen, C., So, YS., Kremling, K., Bradbury, PJ., Brutnell, T., Stitt, M., Buckler, ES (2015). Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population. Plant physiology, 168 (2), 575-83. DOI : 10.1104/pp.15.00025

2014

Abbà, S.; Galetto, L.; Carle, P.; Carrère, S.; Delledonne, M.; Foissac, X.; Palmano, S.; Veratti, F.; Marzachì, C. RNA-Seq profile of flavescence dorée phytoplasma in grapevine. BMC genomics, 2014, 15 (1), 1088. DOI : 10.1186/1471-2164-15-1088

Ahmad, J. N.; Renaudin, J.; Eveillard, S. Expression of defence genes in stolbur phytoplasma infected tomatoes, and effect of defence stimulators on disease development. European Journal of Plant Pathology, 2014, 139 (1), 39-51. DOI : 10.1007/s10658-013-0361-x

Allwood, J. W.; Cheung, W.; Xu, Y.; Mumm, R.; De Vos; R. C. H., Deborde, C.; Biais, B.; Maucourt, M.; Berger, Y.; Schaffer, A. A.; Rolin, D.; Moing, A.; Hall, R. D.; Goodacre, R. Metabolomics in melon: a new opportunity for aroma analysis. Phytochemistry, 2014,  99, 61-72. DOI : 10.1016/j.phytochem.2013.12.010

Andreini, L.; Garcia De Cortazar Atauri, I.; Chuine, I.; Viti, R.; Bartolini, S.; Ruiz, D.; Campoy-Corbalan, J. A.; Legave, J.-M.; Audergon, J. M., Bertuzzi, P. Understanding dormancy release in apricot flower buds (Prunus armeniaca L.) using several process-based phenological models. Agricultural and Forest Meteorology, 2014, 184, 210- 219. DOI : 10.1016/j.agrformet.2013.10.005

Ariizumi, T.; Kishimoto, S.; Kakami, R.; Maoka, T.; Hirakawa, H.; Suzuki, Y.; Ozeki, Y.; Shirasawa, K.; Bernillon, S.; Okabe, Y.; Moing, A.; Asamizu, E.; Rothan, C.; Ohmiya, A.; Ezura, H. Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum). The Plant journal : for cell and molecular biology, 2014, 79 (3), 453-465. DOI : 10.1111/tpj.12570

Atanasova-Penichon, V.; Bernillon, S.; Marchegay, G.; Lornac, A.; Pinson-Gadais, L.; Ponts, N.; Zehraoui, E.; Barreau, C.; Richard-Forget, F. Bioguided isolation, characterization, and biotransformation by Fusarium verticillioides of maize kernel compounds that inhibit fumonisin production. Molecular Plant-Microbe Interactions : MPMI, 2014, 27 (10), 1148-1158. DOI : 10.1094/MPMI-04-14-0100-R

Beauvoit, B.; Colombié, S.; Monier, A.; Andrieu, M.-H.; Biais, B.; Benard, C.; Cheniclet, C.; Dieuaide Noubhani, M.; Nazaret, C.; Mazat, J.-P.; Gibon, Y.  Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion. The Plant Cell, 2014, 26 (8), 3224-42. DOI : 10.1105/tpc.114.127761

Bermúdez, L.; de Godoy, F.; Baldet, P.; Demarco, D.; Osorio, S.; Quadrana, L.; Almeida, J.; Asis, R.; Gibon, Y.; Fernie, A. R.; Rossi, M.; Carrari, F. Silencing of the tomato Sugar Partitioning Affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism. The Plant journal : for cell and molecular biology, 2014, 77 (5), 676-87. DOI : 10.1111/tpj.12418

Biais, B.; Bénard, C.; Beauvoit, B.; Colombié, S.; Prodhomme, D.; Ménard, GN.; Bernillon, S.; Gehl, B.; Gautier, H.; Ballias, P.; Mazat, JP.; Sweetlove, LJ.; Génard, M.; Gibon, Y. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant physiology, 2014, 164, 1204-1221. DOI : 10.1104/pp.113.231241

Campoy, JA; Le Dantec, L; Barreneche, T; Dirlewanger, E; Quero-García, J. New Insights into Fruit Firmness and Weight Control in Sweet Cherry. Plant Molecular Biology Reporter, 2014. DOI 10.1007/s11105-014-0773-6

Candresse, T.; Filloux, D.; Muhire, B.; Jullian, C.; Galzi, S.; Fort, G.; Bernardo, P.; Daugrois, J.-H.; Fernandez, E.; Martin, D. P.; Varsani, A.; Roumagnac, P. Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context. PloS one, 2014, 9 (7). DOI : 10.1371/journal.pone.0102945

Castede, S.; Campoy, J. A.; Quero-Garcia, J.; Le Dantec, L.; Lafargue, M. D.; Barreneche, T.; Wenden, B.; Dirlewanger, E. Genetic determinism of phenological traits highly affected by climate change in Prunus avium: flowering date dissected into chilling and heat requirements. The New phytologist, 2014, 202 (2), 703-15. DOI : 10.1111/nph.12658

Chaher, N.; Arraki, K.; Dillinseger, E.; Temsamani, H.; Bernillon, S.; Pedrot, E.; Delaunay, JC.; Mérillon, JM.; Monti, JP.; Izard, JC.; Atmani, D.; Richard, T. Bioactive stilbenes from Vitis vinifera grapevine shoots extracts. Journal of the science of food and agriculture, 2014, 94, 951-954. DOI : 10.1002/jsfa.6341

Chandran, S.; Noskov, V. N.; Segall-Shapiro, T. H.; Ma, L.; Whiteis, C.; Lartigue, C.; Jores, J.; Vashee, S.; Chuang, R.-Y. TREC-IN: gene knock-in genetic tool for genomes cloned in yeast. BMC genomics, 2014, 15(1), 1180. DOI : 10.1186/1471-2164-15-1180

Chevalier, C.; Bourdon, M.; Pirrello, J.; Cheniclet, C.; Gévaudant, F.; Frangne, N. Endoreduplication and fruit growth in tomato: evidence in favour of the karyoplasmic ratio theory. Journal of Experimental Botany, 2014, 65 (10), 2731-2746. DOI : 10.1093/jxb/ert366

Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 2014, 111 (39), E4127-36. DOI : 10.1073/pnas.1410238111

Choulet, F.; Alberti, A.; Theil, S.; Glover, N. M.; Barbe, V.; Daron, J.; Pingault, L.; Sourdille, P.; Couloux, A.; Paux, E.; Leroy, P.; Mangenot, S.; Guilhot, N.; Le Gouis, J.; Balfourier, F.; Alaux, M.; Jamilloux, V.; Julie, P.; Durand, C.; Bellec, A.; Gaspin, C.; Šafář, J.; Doležel, J.; Rogers, J.; Vandepoele, K.; Aury, J.-M.; Mayer, K.; Berges, H.; Quesneville, H.; Wincker, P.; Feuillet, C. Structural and Functional Partitioning of Bread Wheat Chromosome 3B. Sciences, 2014, 345 (6194 ), online. DOI : 10.1126/science.1249721

Cosson, P.; Decroocq, V.; Revers, F. Development and characterization of 96 microsatellite markers suitable for QTL mapping and accession control in an Arabidopsis core collection. Plant methods, 2014, 10 (1), 2 : 1-6. DOI : 10.1186/1746-4811-10-2

Costes, E.;Crespel, L.; Denoyes-Rothan, B.; Morel, P.; Demene, M.-N.; Lauri, P.-E.; Wenden, B. Bud structure, position and fate generate various branching patterns along shoots of closely related Rosaceae species: a review. Frontiers in plant science, 2014, 5, e666. DOI : 10.3389/fpls.2014.00666

Decroocq, S.; Chague, A.; Lambert, P.; Roch, G.; Audergon, J. M.; Geuna, F.; Chiozzotto, R.; Bassi, D.; Dondini, L.; Tartarini, S.; Salava, J.; Krska, B.; Palmisano, F.; Karayiannis, I.; Decroocq, V. Selecting with markers linked to the PPVres major QTL is not sufficient to predict resistance to Plum Pox Virus (PPV) in apricot. Tree Genetics and Genomes, 2014, 10 (5), 1161-1170. DOI : 10.1007/s11295-014-0750-0

Desnoues, E.; Gibon, Y.; Baldazzi, V.; Signoret, V.; Génard, M.; Quilot-Turion, B. Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios. BMC plant biology, 2014, 14 (1), 336 : 1-12. DOI : 10.1186/s12870-014-0336-x

Dordet-Frisoni, E.; Sagne, É.; Baranowski, E.; Breton, M.; Nouvel, X.; Blanchard, A.; Marenda, M. S.; Tardy, F.; Sirand-Pugnet, P.; Citti, C. Chromosomal transfers in mycoplasmas: when minimal genomes go mobile. mBio, 2014, 5 (6), 1-11. DOI : 10.1128/mBio.01958-14

Douliez, J.-P.; Gaillard, C. Self-assembly of fatty acids: from foams to protocell vesicles. New Journal of Chemistry, 2014, 38 (11), 5142-5148. DOI : 10.1039/c4nj00914b

Douliez, J.-P.; Navailles, L.; Dufourc, E. J.; Nallet, F. Fully deuterated magnetically oriented system based on Fatty Acid direct hexagonal phases. Langmuir : the ACS journal of surfaces and colloids, 2014, 30 (18), 5075-81. DOI : 10.1021/la500808q

Douliez, J.-P.; Zhendre, V.; Grélard, A.; Dufourc, E. J. Aminosilane/Oleic Acid vesicles as model membranes of protocells. Langmuir : the ACS journal of surfaces and colloids, 2014, 30 (49), 14717-24. DOI : 10.1021/la503908z

Dumont, J.; Keski-Saari, S.; Keinänen, M.; Cohen, D.; Ningre, N.; Kontunen-Soppela, S.; Baldet, P.; Gibon, Y.; Dizengremel, P.; Vaultier, M.-N.; Jolivet, Y.; Oksanen, E.; Le Thiec, D. Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes. Tree physiology, 2014, 34 (3), 253-66. DOI : 10.1093/treephys/tpu004

Duret, S.; Batailler, B.; Dubrana, M.-P.; Saillard, C.; Renaudin, J.; Beven, L.; Arricau-Bouvery, N. Invasion of insect cells by Spiroplasma citri involves spiralin relocalization and lectin/glycoconjugate-type interactions.Cellular microbiology, 2014, , 16 (7), 1119-1132. DOI : 10.1111/cmi.12265

Fernandez, L.; Le Cunff, L.; Tello, J.; Lacombe, T.; Boursiquot, J.-M.; Fournier-Level, A.; Bravo, G.; Lalet, S.; Torregrosa, L.; This, P.; Martinez-Zapater, J.-M. Haplotype diversity of VvTFL1A gene and association with cluster traits in grapevine (V. vinifera). BMC Plant Biology, 2014, 14, 209. DOI : 10.1186/s12870-014-0209-3

García, J. A.; Glasa, M.; Cambra, M.; Candresse, T. Plum Pox Virus and Sharka: A Model Potyvirus and a Major Disease. Molecular plant pathology, 2014, 15 (3), 226-241. DOI : 10.1111/mpp.12083

Garcion, C.; Eveillard, S.; Renaudin, J. Characterisation of the tolerance to the beet leafhopper transmitted virescence agent phytoplasma in the PI128655 accession of Solanum peruvianum. Annals of Applied Biology, 2014, 165 (2), 236-248. DOI : 10.1111/aab.12131

Génard, M.; Baldazzi, V.; Gibon, Y. Metabolic studies in plant organs: don't forget dilution by growth. Frontiers in plant science, 2014, 5, 1-5. DOI : 10.3389/fpls.2014.00085

Giacomoni, F.; Le Corguillé, G.; Monsoor, M.; Landi, M.; Pericard, P.; Petera, M.; Duperier, C.; TREMBLAY FRANCO, M.; Martin, J.-F.; Jacob, D.; Goulitquer, S.; Thévenot, E. A.; Caron, C. Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics (Oxford, England), 2014, advanced access. DOI : 10.1093/bioinformatics/btu813

Gibon, Y. Why bring post-genomics into the phosphorus-impoverished bush?. Plant, cell & environment, 2014, 37 (6), 1273-5. DOI : 10.1111/pce.12265

Glasa, M.; Predajňa, L.; Komínek, P.; Nagyová, A.; Candresse, T.; Olmos, A. Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines. Archives of Virology, 2014, 159 (8), 2103-2107. DOI : 10.1007/s00705-014-2031-5

Grosjean, H.; Breton, M.; Sirand-Pugnet, P.; Tardy, F.; Thiaucourt, F.; Citti, C.; Barré, A.; Yoshizawa, S.; Fourmy, D.; de Crécy-Lagard, V.; Blanchard, A. Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes. PLoS genetics, 2014, 10 (5), e1004363. DOI : 10.1371/journal.pgen.1004363

Julio, E.; Cotucheau, J.; Decorps, C.; Volpatti, R.; Sentenac, C.; Candresse, T.; Dorlhac de Borne, F. A Eukaryotic Translation Initiation Factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses.Plant Molecular Biology Reporter, 2014, Online first. DOI : 10.1007/s11105-014-0775-4

Katsiani, A.T.; Maliogka, V.I.; Candresse, T.; Katis, N.I.  Host range studies, genetic diversity and evolutionary relationships of ACLSV isolates from ornamental, wild and cultivated rosaceous species. Plant Pathology, 2014, 63 (1), 63-71. DOI: 10.1111/ppa.12058

Khanchezar, A.; Beven, L.; Izadpanah, K.; Salehi, M.; Saillard, C. Spiralin Diversity Within Iranian Strains of Spiroplasma citri. Current microbiology, 2014, 68 (1), 96-104. DOI : 10.1007/s00284-013-0437-z

Kobayashi, M.; Nagasaki, H.; Garcia, V.; Just, D.; Bres, C.; Mauxion, JP.; Le Paslier, MC.; Brunel, D.; Suda, K.; Minakuchi, Y.; Toyoda, A.; Fujiyama, A.; Toyoshima, H.; Suzuki, T.; Igarashi, K.; Rothan, C.; Kaminuma, E.; Nakamura, Y.; Yano, K.; Aoki, K. Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum). Plant & Cell Physiology, 2014, 55 (2), 445-454. DOI : 10.1093/pcp/pct181

Lartigue, C.; Lebaudy, A.; Blanchard, A.; Yacoubi, B. E.; Rose, S.; Grosjean, H.; Douthwaite, S. The flavoprotein Mcap0476 (RlmFO) catalyzes m5U1939 modification in Mycoplasma capricolum 23S rRNA. Nucleic acids research, 2014, 42 (12), 8073-8082. DOI : 10.1093/nar/gku518

Mambole, I. A.; Bonheur, L.; Svanella-Dumas, L.; Filloux, D.; Gomez, R.-M.; Faure, C.; Lange, D.; Anzala, F.; Pavis, C.; Marais, A.; Roumagnac, P.; Candresse, T.; Teycheney, P.-Y. Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams.Archives of Virology, 2014, Online first. DOI : 10.1007/s00705-014-2211-3

Marais, A.; Faure, C.; Couture, C.; Bergey, B.; Gentit, P.; Candresse, T. Characterization by deep sequencing of divergent Plum bark necrosis stem pitting-associated virus isolates and development of a broad spectrum PBNSPaV detection assay. Phytopathology, 2014, 104 (6), 660-666. DOI : 10.1094/PHYTO-08-13-0229-R

Martin, J.-C.; Maillot, M.; Mazerolles, G.; Verdu, A.; Lyan, B.; Migne, C.; Defoort, C.; Canlet, C.; Junot, C.; Guillou, C.; Manach, C.; Jacob, D.; Jouan-Rimbaud Bouveresse, D.; Paris, E.; Pujos-Guillot, E.; Jourdan, F.; Giacomoni, F.; Courant, F.; Fave, G.; Le Gall, G.; Chassaigne, H.; Tabet, J.-C.; Martin, J.-F.; Antignac, J.-P.; Shintu, L.; Defernez, M.; Philo, M.; Alexandre-Gouaubau, M.-C.; Amiot-Carlin, M. J.; Bossis, M.; Triba, M. N.; Stojilkovic, N.; Banzet, N.; Molinié, R.; Bott, R.; Goulitquer, S.; Caldarelli, S.; Rutledge, D. Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study . Metabolomics, 2014, online first, 1-15. DOI : 10.1007/s11306-014-0740-0

Massart, S.; Olmos, A.; Jijakli, H.; Candresse, T. Current impact and future directions of high throughput sequencing in plant virus diagnostics. Virus research, 2014, 188, 90-96. DOI : 10.1016/j.virusres.2014.03.029

Nicaise, V. Crop immunity against viruses: outcomes and future challenges. Frontiers in plant science, 2014, 5, 660 : 1-18. DOI : 10.3389/fpls.2014.00660

Ouibrahim, L.; Mazier, M.; Estevan, J.; Pagny, G.; Decroocq, V.; Desbiez, C.; Moretti, A.; Gallois, J.-L.; Caranta, C. Cloning of the Arabidopsis rwm1 gene for resistance to Watermelon mosaic virus points to a new function for natural virus resistance genes. Plant Journal, 2014, 79 (5), 705-716. DOI : 10.1111/tpj.12586

Perraki, A.; Binaghi, M.; Mecchia, M. A.; Gronnier, J.; German-Retana, S.; Mongrand, S.; Bayer, E.; Zelada, A. M.; Germain, V. StRemorin1.3 hampers Potato virus X TGBp1 ability to increase plasmodesmata permeability, but does not interfere with its silencing suppressor activity. FEBS Letters, 2014, 588 (9), 1699 - 1705. DOI : 10.1016/j.febslet.2014.03.014

Petit, J.; Bres, C.; Just, D.; Garcia, V.; Mauxion, J.-P.; Marion, D.; Bakan, B.; Joubès, J.; Domergue, F.; Rothan, C. Analyses of tomato fruit brightness mutants uncover both cutin-deficient and cutin- abundant mutants and a new hypomorphic allele of GDSL lipase. Plant Physiology, 2014, 164 (2), 888-906. DOI : 10.1104/pp.113.232645

Pirrello, J.; Bourdon, M.; Cheniclet, C.; Bourge, M.; Brown, SC.; Renaudin, JP.; Frangne, N.; Chevalier, C. How fruit developmental biology makes use of flow cytometry approaches. Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2014, 85A, 115-125. DOI : 10.1002/cyto.a.22417

Ravelonandro, M.; Scorza, R.; Hily, J.-M.; Briard, P. The efficiency of RNA interference for conferring stable resistance to plum pox virus. Plant Cell Tissue and Organ Culture, 2014, 118 (2), 347-356. DOI : 10.1007/s11240-014-0487-3

Recht, L.; Töpfer, N.; Batushansky, A.; Sikron, N.; Zarka, A.; Gibon, Y.; Nikoloski, Z.; Fait, A.; Boussiba, S. Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen-Starvation in the Green Alga Haematococcus pluvialis. The Journal of Biological Chemistry, 2014. DOI : 10.1074/jbc.M114.555144

Rodamilans, B.; San León, D.; Mühlberger, L.; Candresse, T.; Neumüller, M.; Oliveros, J. C.; García, J. A. Transcriptomic Analysis of Prunus domestica Undergoing Hypersensitive Response to Plum Pox Virus Infection. PloS one, 9 (6), e100477. DOI : 10.1371/journal.pone.0100477

Salazar, J. A.; Ruiz, D.; Campoy, J. A.; Sánchez-Pérez, R.; Crisosto, C. H.; Martínez-García, P. J.; Blenda, A.; Jung, S.; Main, D.; Martínez-Gómez, P.; Rubio, M. Quantitative trait loci (QTL) and mendelian trait loci (MTL) analysis in prunus: a breeding perspective and beyond. Plant Molecular Biology Reporter, 2014, 32 (1), 1-18. DOI : 10.1007/s11105-013-0643-7

Sorel, M.; Garcia, J. A.; German-Retana, S. The Potyviridae Cylindrical Inclusion helicase: a key multipartner and multifunctional protein. Molecular plant-microbe interactions : MPMI, 2014, 27 (3), 215-216. DOI : 10.1094/MPMI-11-13-0333-CR

Sorel, M.; Svanella-Dumas, L.; Candresse, T.; Acelin, G.; Pitarch, A.; Houvenaghel, M.-C.; German-Retana, S. Key Mutations in the Cylindrical Inclusion Involved in Lettuce mosaic virus Adaptation to eIF4E-Mediated Resistance in Lettuce. Molecular Plant-Microbe Interactions :MPMI, 2014, 27 (9), 1014-24. DOI : 10.1094/MPMI-04-14-0111-R

Stitt, M.; Gibon, Y. Why measure enzyme activities in the era of systems biology?. Trends in plant science, 2014, 19 (4), 256-65. DOI : 10.1016/j.tplants.2013.11.003

Su, L.; Bassa, C.; Audran, C.; Cheniclet, C.; Chevalier, C.; Bouzayen, M.; Roustan, J.-P.; Chervin, C. The auxin Sl-IAA17 transcriptional repressor controls fruit size via the regulation of the endoreduplication-related cell expansion. Plant & cell physiology, 2014, 55 (11), 1969-1976. DOI : 10.1093/pcp/pcu124

Svanella-Dumas, L.; Verdin, E.; Faure, C.; German-Retana, S.; Gognalons, P.; Danet, J.-L.; Marais, A.; Candresse, T. Adaptation of Lettuce mosaic virus to Catharanthus roseus involves mutations in the central domain of the VPg. Molecular plant-microbe interactions : MPMI, 2014, 27 (5), 491-497. DOI : 10.1094/MPMI-10-13-0320-R

Tardy, F.; Mick, V.; Dordet-Frisoni, E.; Marenda, M.; Sirand-Pugnet, P.; Blanchard, A.; Citti, C. Integrative conjugative elements (ICEs) are widespread in field isolates of Mycoplasma species pathogenic for ruminants. Applied and environmental microbiology, 2014, Online First. DOI : 10.1128/AEM.03723-14

Thébault, P.; Bourqui, R.; Benchimol, W.; Gaspin, C.; Sirand-Pugnet, P.; Uricaru, R.; Dutour, I. Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. Briefings in bioinformatics, 2014, Advance Access. DOI : 10.1093/bib/bbu045

Vayssier-Taussat, M.; Albina, E.; Citti, C.; Cosson, J.-F.; Jacques, M. A.; Lebrun, M.-H.; Le Loir, Y.; Ogliastro, M. H.; Petit, M. A.; Roumagnac, P.; Candresse, T. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Frontiers in Cellular and Infection Microbiology, 2014, 4, article 29. DOI : 10.3389/fcimb.2014.00029

Wallace, JG.; Bradbury, PJ.; Zhang, N.; Gibon, Y.; Stitt, M.; Buckler, ES. Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize. PLoS genetics, 2014, 10 (12), e1004845. DOI : 10.1371/journal.pgen.1004845

Wulff, NA.; Zhang, S.; Setubal, JC.; Almeida, NF.; Martins, EC.; Harakava, R.; Kumar, D.; Rangel, LT.; Foissac, X.; Bove, J.; Gabriel, DW. The complete genome sequence of Candidatus Liberibacter americanus, associated with citrus Huanglongbing. Molecular Plant-Microbe Interactions : MPMI, 27 (2), 2014, 163-176. DOI : 10.1094/MPMI-09-13-0292-R

Zhang, S.; Ravelonandro, M.; Russell, P.; McOwen, N.; Briard, P.; Bohannon, S.; Vrient, A. Rapid diagnostic detection of plum pox virus in Prunus plants by isothermal AmplifyRP(®) using reverse transcription-recombinase polymerase amplification. Journal of Virological Methods, 2014, 207, 114-120. DOI : 10.1016/j.jviromet.2014.06.026

2013

Ahmad, J. N.; Garcion, C.; Teyssier, E.; Hernould, M.; Gallusci, P.; Pracros, P.; Renaudin, J.; Eveillard, S. Effects of stolbur phytoplasma infection on DNA methylation processes in tomato plants. Plant Pathology. 2013, 62(1), 205-216. DOI : 10.1111/j.1365-3059.2012.02605.x

Arous, S.; Marais, A.; Faure, C.; Svanella-Dumas, L.; Candresse, T. Partial sequence of a new Partitivirus-infecting Podosphaera tridactyla, the Prunus powdery mildew agent. Virus Genes, 2013, 46(1), 199-200. DOI: 10.1007/s11262-012-0840-8

Balbontín, C.; Ayala, H.; Bastias, R. M.; Tapia, G.; Ellena, M.; Torres, C.; Yuri, J. A.; Quero-Garcia, J.; Rios, J. C.; Silva, H. Cracking in sweet cherries: A comprehensive review from a physiological, molecular and genomic perspective. Chilean Journal of Agricultural Research, 2013, 73(1), 66-72. Full text via ProdINRA

Baldazzi, V.; Pinet, A.; Vercambre, G.; Bénard, C.; Biais, B.; Génard, M. In-silico analysis of water and carbon relations under stress conditions. a multi-scale perspective centered on fruit. Frontiers in Plant Science, 2013. DOI : 10.3389/fpls.2013.00495

Baldet, P.; Bres, C.; Okabe, Y.; Mauxion, J.-P.; Just, D.; Bournonville, C.; Ferrand, C.; Mori, K.; Ezura, H.; Rothan, C. Investigating the role of vitamin C in tomato through TILLING identification of ascorbate-deficient tomato mutants. Plant Biotechnology (Tsukuba), 2013, 30 (3), 309-314. DOI : 10.5511/plantbiotechnology.13.0622b

Barraco, G.; Chatelet, P.; Balsemin Lerigoleur, E.; Decourcelle, T.; Sylvestre, I.; Engelmann, F. Cryopreservation of Prunus cerasus through vitrification and replacement of cold hardening with preculture on medium enriched with sucrose and/or glycerol. Scientia Horticulturae, 2013, 148, 104-108. DOI: 10.1016/j.scienta.2012.09.034

Bernillon, S.; Biais, B.; Deborde, C.; Maucourt, M.; Cabasson, C.; Gibon, Y.; Hansen, T. H.; Husted, S.; de Vos, R. C. H.; Mumm, R.; Jonker, H.; Ward, J. L.; Miller, S. J.; Baker, J. M.; Burger, J.; Tadmor, Y.; Beale, M. H.; Schjoerring, J. K.; Schaffer, A. A.; Rolin, D.; Hall, R. D.; Moing, A. Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics, 2013, 9(1), 57-77. DOI: 10.1007/s11306-012-0429-1

Bureau, S.; Quilot-Turion, B.; Signoret, V.; Renaud, C.; Maucourt, M.; Bancel, D.; Renard, C. Determination of the composition in sugars and organic acids in peach using mid infrared spectroscopy: comparison of prediction results according to data sets and different reference methods. Analytical Chemistry, 2013, 85 (23), 11312-11318. DOI : 10.1021/ac402428s

Campoy, J. A.; Ruiz, D.; Nortes, M.; Egea, J. Temperature efficiency for dormancy release in apricot varies when applied at different amounts of chill accumulation. Plant Biology, 2013, 15, 28-35. DOI : 10.1111/j.1438-8677.2012.00636.x

Candresse, T.; Marais, A.; Faure, C. First report of Southern tomato virus on tomatoes in Southwest France. Plant Disease, 2013, 97 (8), 1124. DOI : 10.1094/PDIS-01-13-0017-PDN

Candresse, T.; Marais, A.; Faure, C.; Gentit, P. Association of Little cherry virus 1 (LChV1) with the Shirofugen stunt disease and characterization of the genome of a divergent LChV1 isolate. Phytopathology, 2013, 103(3), 293-8. DOI: 10.1094/PHYTO-10-12-0275-R

Carillo, P.; Feil, R.; Gibon, Y.; Satoh-Nagasawa, N.; Jackson, D.; Bläsing, O. E.; Stitt, M.; Lunn, J. E. A fluorometric assay for trehalose in the picomole range. Plant methods, 2013, 9 (1), 21. DOI : 10.1186/1746-4811-9-21

Citti, C.; Blanchard, A. Mycoplasmas and their host: emerging and re-emerging minimal pathogens.Trends in microbiology, 2013, 21(4), 196-203. DOI: 10.1016/j.tim.2013.01.003

De Franceschi, P.; Stegmeir, T.; Cabrera, A.; Van Der Knaap, E.; Rosyara, U. R.; Sebolt, A.; Dondini, L.; Dirlewanger, E.; Quero-Garcia, J.; Campoy, J. A.; Lezzoni, A. Cell number regulator genes in Prunus provide candidate genes for the control of fruit size in sweet and sour cherry. Molecular Breeding, 2013, 32 (2), 311-326. DOI : 10.1007/s11032-013-9872-6

De la Cruz, A. A.; Hilbert, G.; Mengin, V.; Rivière, C.; Ollat, N.; Vitrac, C.; Bordenave, L.; Decroocq, S.; Delaunay, J.-C.; Mérillon, J.-M.; Monti, J.-P.; Gomès, E.; Richard, T. Anthocyanin phytochemical profiles and anti-oxidant activities of Vitis candicans and Vitis doaniana. Phytochemical Analysis, 2013, 24 (5), 446-452. DOI : 10.1002/pca.2447

Delmas, F.; Sankaranarayanan, S.; Deb, S.; Widdup, E.; Bournonville, C.; Bollier, N.; Northey, J. G. B.; McCourt, P.; Samuel, M. A. ABI3 controls embryo degreening through Mendel's I locus. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (40), E3888 - E3894. DOI : 10.1073/pnas.1308114110

Dordet-Frisoni, E.; Baranowski, E.; Barré, A.; Blanchard, A.; Breton, M.; Couture, C.; Dupuy, V.; Gaurivaud, P.; Jacob, D.; Lemaitre, C.; Manso-Silvan, L.; Nikolski, M.; Nouvel, X.; Poumarat, F.; Sirand-Pugnet, P.; Thébault, P.; Theil, S.; Thiaucourt, F.; Citti, C.; Tardy, F.  Draft genome sequences of Mycoplasma auris and Mycoplasma yeatsii, two Species of the ear canal of Caprinae. Genome announcements, 2013, 1 (3), e00280-13, 1-2. DOI : 10.1128/genomeA.00280-13

Dordet-Frisoni, E.; Marenda, M.S.; Sagne, É.; Nouvel, X.; Guérillot, R.; Glaser, P.; Blanchard, A.; Tardy, F.; Sirand-Pugnet, P.; Baranowski, E.; Citti, C. ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain. Molecular microbiology, 2013, 89 (6), 1226-39. DOI : 10.1111/mmi.12341

Dupuy, V.; Sirand-Pugnet, P.; Baranowski, E.; Barré, A.; Breton, M.; Couture, C.; Dordet-Frisoni, E.; Gaurivaud, P.; Jacob, D.; Lemaitre, C.; Manso-Silvan, L.; Nikolski, M.; Nouvel, X.; Poumarat, F.; Tardy, F.; Thébault, P.; Theil, S.; Citti, C.; Blanchard, A.; Thiaucourt, F. Complete genome sequence of Mycoplasma putrefaciens Strain 9231, one of the agents of Contagious Agalactia in goats. Genome announcements, 2013, 1 (3), e00354-13, 1-2. DOI : 10.1128/genomeA.00354-13

Fernandez, L.; Chaïb, J.; Martinez-Zapater, J.-M.; Thomas, M. R.; Torregrosa, L. Mis-expression of a PISTILLATA-like MADS box gene prevents fruit development in grapevine. The Plant journal : for cell and molecular biology, 2013, 73 (6), 918-28. DOI : 10.1111/tpj.12083

Firrao, G.; Martini, M.; Ermacora, P.; Loi, N.; Torelli, E.; Foissac, X.; Carle, P.; Kirkpatrick, B. C.; Liefting, L.; Schneider, B.; Marzachì, C.; Palmano, S. Genome wide sequence analysis grants unbiased definition of species boundaries in "Candidatus Phytoplasma". Systematic and applied microbiology, 2013, 36 (8), 539-48. DOI : 10.1016/j.syapm.2013.07.003

Garchery, C.; Gest, N.; Do, P.T.; Alhagdow, M.; Baldet, P.; Menard, G.; Rothan, C.; Massot, C.; Gautier, H.; Aarrouf, J.; Fernie, A.R.; Stevens, R. A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water-deficit. Plant Cell Environment. 2013, 36(1):159-175. DOI: 10.1111/j.1365-3040.2012.02564.x

Gaston, A.; Perrotte, J.; Lerceteau-Köhler, E.; Rousseau-Gueutin, M.; Petit, A.; Hernould, M.; Rothan, C.; Denoyes, B. PFRU, a single dominant locus regulates the balance between sexual and asexual plant reproduction in cultivated strawberry. Journal of experimental botany, 2013, 64 (7), 1837-48. DOI: 10.1093/jxb/ert047

Glasa, M.; Prikhodko, Y.; Predajňa, L.; Nagyová, A.; Shneyder, Y.; Zhivaeva, T.; Subr, Z.; Cambra, M.; Candresse, T. Characterization of Sour Cherry isolates of Plum pox virus from the Volga Basin in Russia reveals a new cherry strain of the virus. Phytopathology, 2013, 103 (9), 972-9. DOI :  10.1094/PHYTO-11-12-0285-R

Hashemian, S. M. B.; Taheri, H.; Alian, Y. M.; Bove, J.; Duran-Vila, N. Complex mixtures of viroids identified in the two main citrus growing areas of Iran. Journal of Plant Pathology, 2013, 95 (3), 647-654. DOI : 10.4454/JPP.V95I3.044

Hipper, C.; Brault, V.; Ziegler-Graff, V.; Revers, F. Viral and cellular factors involved in phloem transport of plant viruses. Frontiers in Plant Science, 2013, 4, 1-24. DOI: 10.3389/fpls.2013.00154

Hirakawa, H.; Shirasawa, K.; Ohyama, A.; Fukuoka, H.; Aoki, K.; Rothan, C.; Sato, S.; Isobe, S.; Tabata, S. Genome-wide SNP genotyping to infer the effects on gene functions in tomato. DNA research : an international journal for rapid publication of reports on genes and genomes, 2013, 20 (3), 221-33. DOI : 10.1093/dnares/dst005

International Peach Genome Initiative; Verde, I.; Abbott, A.; Scalabrin, S.; Jung, S.; Shu, S.; Marroni, F.; Zhebentyayeva, T.; Dettori, M. T.; Grimwood, J.; Cattonaro, F.; Zuccolo, A.; Rossini, L.; Jenkins, J.; Vendramin, E.; Meisel, L. A.; Decroocq, V.; Sosinski, B.; Prochnik, S.; Mitros, T.; Policriti, A.; Cipriani, G.; Dondini, L.; Ficklin, S.; Goodstein, D. M.; Xuan, P.; Del Fabbro, C.; Aramini, V.; Copetti, D.; Gonzalez, S.; Horner, D. S.; Falchi, R.; Lucas, S.; Mica, E.; Maldonado, J.; Lazzari, B.; Bielenberg, D.; Pirona, R.; Miculan, M.; Barakat, A.; Testolin, R.; Stella, A.; Tartarini, S.; Tonutti, P.; Arús, P.; Orellana, A.; Wells, C.; Main, D.; Vizzotto, G.; Silva, H.; Salamini, F.; Schmutz, J.; Morgante, M.; Rokhsar, D. S. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature genetics, 2013, 45 (5), 487-94. DOI : 10.1038/ng.2586

Jacob, D.; Deborde, C.; Moing, A. An efficient spectra processing method for metabolite identification from (1)H-NMR metabolomics data. Analytical and bioanalytical chemistry, 2013, 405 (15), 5049-61. DOI: 10.1007/s00216-013-6852-y

Jores, J.; Fischer, A.; Sirand-Pugnet, P.; Thomann, A.; Liebler-Tenorio, E. M.; Schnee, C.; Santana-Cruz, I.; Heller, M.; Frey, J.  Mycoplasma feriruminatoris sp. nov., a fast growing Mycoplasma species isolated from wild Caprinae. Systematic and applied microbiology, 2013, 36 (8), 533-8. DOI : 10.1016/j.syapm.2013.07.005

Just, D.; Garcia, V.; Fernandez, L.; Bres, C.; Mauxion, J.-P.; Petit, J.; Jorly, J.; Assali, J.; Bournonville, C.; Ferrand, C.; Baldet, P.; Lemaire-Chamley, M.; Mori, K.; Okabe, Y.; Arizumi, T.; Ezura, H.; Rothan, C. Micro-Tom mutants for functional analysis of target genes and discovery of new alleles in tomato . Plant Biotechnology (Tsukuba), 2013, 30 (3), 225-231. DOI : 10.5511/plantbiotechnology.13.0622a

Klagges, C.; Campoy, J.A.; Quero-Garcia, J., Guzmán, A.; Mansur, L.; Gratacós, E.; Silva, H.; Rosyara, U.R.; Lezzoni, A.; Meisel, L. A.; Dirlewanger, E. Construction and comparative analyses of highly dense linkage maps of two sweet cherry intra-specific progenies of commercial cultivars. Plos One, 2013, 8 (1), e54743. DOI : 10.1371/journal.pone.0054743

Manso-Silvan, L.; Tardy, F.; Baranowski, E.; Barré, A.; Blanchard, A.; Breton, M.; Couture, C.; Citti, C.; Dordet-Frisoni, E.; Dupuy, V.; Gaurivaud, P.; Jacob, D.; Lemaitre, C.; Nikolski, M.; Nouvel, X.; Poumarat, F.; Thébault, P.; Theil, S.; Thiaucourt, F.; Sirand-Pugnet, P. Draft genome sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, three species with equivocal pathogenic status for cattle. Genome announcements, 2013, 1 (3), e00348-13, 1-2. DOI : 10.1128/genomeA.00348-13

Massot, C.; Bancel, D.; Lopez Lauri, F.; Truffault, V.; Baldet, P.; Stevens, R.; Gautier, H. High temperature inhibits ascorbate recycling and light stimulation of the ascorbate pool in tomato despite increased expression of biosynthesis genes. PloS one, 2013, 8 (12), 13p. DOI : 10.1371/journal.pone.0084474

Mori, K.; Lemaire-Chamley, M.; Asamizu, E.; Mizoguchi, T.; Ezura, H.; Rothan, C. Comparative analysis of common genes involved in early fruit development in tomato and grape. Plant Biotechnology (Tsukuba), 2013, 30 (3), 295-300. DOI : 10.5511/plantbiotechnology.13.0321a

Mustafayev, E.; Svanella-Dumas, L.; Kumari, S.; Akparov, Z.; Candresse, T. First report of Barley yellow dwarf virus and Cereal yellow dwarf virus affecting cereal crops in Azerbaijan. Plant Disease, 2013, 97 (6). DOI: 10.1094/PDIS-07-12-0656-PDN

Nelson, W. R.; Munyaneza, J. E.; McCue, K. F.; Bove, J. The Pangaean origin of "candidatus liberibacter" species. Journal of Plant Pathology, 2013, 95 (3), 455-461. DOI : 10.4454/JPP.V95I3.001

Pascual, L.. Xu, J.; Biais, B.; Maucourt, M.; Ballias, P.; Bernillon, S.; Deborde, C.; Jacob, D.; Desgroux, A.; Faurobert, M.; Bouchet, JP.; Gibon, Y.; Moing, A.; Causse, M. Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach. Journal of Experimental Botany, 2013, 64 (18), 5737-5752. DOI : 10.1093/jxb/ert349

Peralta, D.A.; Araya, A.; Nardi, C.F.; Busi, M.V.; Gomez-Casati, D.F. Characterization of the Arabidopsis thaliana E3 Ubiquitin-Ligase AtSINAL7 and identification of the ubiquitination sites. PloS one, 2013, 8 (8), 1-8. DOI : 10.1371/journal.pone.0073104

Pille, J.; Cardinale, D.; Carette, N.; Di Primo, C.; Besong-Ndika, J.; Walter, J.; Lecoq, H.; van Eldijk, M. B.; Smits, F. C. M.; Schoffelen, S.; van Hest, J. C. M.; Mäkinen, K.; Michon, T. General strategy for ordered noncovalent protein assembly on well-defined nanoscaffolds. Biomacromolecules, 2013, 14 (12), 4351-9. DOI : 10.1021/bm401291u

Pirrello, J;, Bourdon, M.; Cheniclet, C.; Coriton, O.; Bourge, M.; Brown, S.; Renaudin, J.-P.; Frangne, N.; Chevalier, C. The structural and molecular analysis of endoreduplicated nuclei in tomato (Solanum lycopersicum) fruit provides evidence for a ploidy-dependent increase in transcriptional activity. Plant Biotechnology (Tsukuba), 2013, 30 (3), 301-307. DOI : 10.5511/plantbiotechnology.13.0319b

Ravelonandro, M.; Scorza, R.; Polak, J.; Callahan, A.; Krska, B.; Kundu, J.; Briard, P. "HoneySweet" Plum—A Valuable Genetically Engineered Fruit-Tree Cultivar. Food and Nutrition Sciences, 2013, 4, 45-49. DOI : 10.4236/fns.2013.46A005

Ring, L.; Yeh, S.-Y.; Hücherig, S.; Hoffmann, T.; Blanco-Portales, R.; Fouche, M.; Villatoro, C.; Denoyes, B.; Monfort, A.; Caballero, J.L.; Muñoz-Blanco, J.; Gershenson, J.; Schwab, W. Metabolic interaction between anthocyanin and lignin biosynthesis is associated with peroxidase FaPRX27 in strawberry fruit. Plant physiology, 2013, 163 (1), 43-60. DOI : 10.1104/pp.113.222778

Rosyara, U. R.; Bink, M. C. A. M.; van de Weg, E.; Zhang, G.; Sebolt, A.; Dirlewanger, E.; Quero-Garcia, J.; Schuster, M.; Iezzoni, A. F. Fruit size QTL identification and the prediction of parental QTL genotypes and breeding values in multiple pedigreed populations of sweet cherry. Molecular Breeding, 2013, 32(4), 875-887. DOI : 10.1007/s11032-013-9916-y

Safarova, D.; Navratil, M.; Paprstein, T.; Candresse, T.; Marais, A. Cherry virus A infecting cherries and plums in the Czech Republic – Short communication. Horticultural Science, 2013, 40(1), 37-39.

Sagar, M.; Chervin, C.; Mila, I.; Hao, Y.; Roustan, J.-P.; Benichou, M.; Gibon, Y.; Biais, B.; Maury, P.; Latché, A.; Pech, J.-C.; Bouzayen, M.; Zouine, M. SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development. Plant Physiology, 2013, 161 (3), 1362-74. DOI : 10.1104/pp.113.213843

Salar, P.; Charenton, C.; Foissac, X.; Malembic-Maher, S. Multiplication kinetics of Flavescence dorée phytoplasma in broad bean. Effect of phytoplasma strain and temperature. European Journal of Plant Pathology, 2013, 135(2), 371-381. DOI: 10.1007/s10658-012-0093-3

Scorza, R.; Callahan, A.; Dardick, C.; Ravelonandro, M.; Polak, J.; Malinowski, T.; Zagrai, I.; Cambra, M.; Kamenova, I. Genetic engineering of Plum pox virus resistance: 'HoneySweet' plum-from concept to product. Plant Cell Tissue and Organ Culture, 2013, 115 (1), 1-12. DOI : 10.1007/s11240-013-0339-6

Serrano, M.; Wang, B.; Aryal, B.; Garcion, C.; Abou-Mansour, E.; Heck, S.; Geisler, M.; Mauch, F.; Nawrath, C.; Métraux, J.-P. Export of salicylic acid from the chloroplast requires the Multidrug and Toxin Extrusion-Like Transporter EDS5. Plant physiology, 2013, 162 (4), 1815-21. DOI : 10.1104/pp.113.218156

Schafleitner, S.; Bonnet, A.; Pedeprat, N.; Rocca, D.; Chartier, P.; Denoyes, B. Genetic variation of resistance of the cultivated strawberry to crown rot caused by Phytophthora cactorum. Journal of Berry Research, 2013, 3 (2), 79-91. DOI : 10.3233/JBR-130052

Shi,J.X.; Adato, A.; Alkan, N.; Lashbrooke, J.; Matas, A.J.; Meir, S.; Malitsky, S.; Martinc, L.B.B.; Isaacson, T.; Schreiber, L.; Granell, A.R.; Grausem, B.; Pinot, F.; Rose, J.C.; Rogachev, I.; Prusky, D.; Just, D.; Rothan, C.; Aharoni, A. The SlSHINE3 Transcription Factor Regulates Cuticle Formation and Epidermal Patterning of Tomato Fruit Epidermis. New Phytologist. 2013, 197(2), 468-480. DOI: 10.1111/nph.12032

Sulpice, R.; Nikoloski, Z.; Tschoep, H.; Antonio, C.; Kleessen, S.; Larhlimi, A.; Selbig, J.; Ishihara, H.; Gibon, Y.; Fernie, A.R.; Stitt, M. Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology, 2013, 162 (1), 347-63. DOI : 10.1104/pp.112.210104

Svanella-Dumas, L.; Candresse, T.; Hullé, M.; Marais, A.  Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic Kerguelen Islands and characterization of two new Luteovirus species. Plos One, 2013, 8 (6), e67231, 1-13. DOI : 10.1371/journal.pone.0067231

Tercé-Laforgue, T.; Bedu, M.; Dargel-Graffin, C.; Dubois, F.; Gibon, Y.; Restivo, F.M.; Hirel, B. Resolving the Role of Plant Glutamate Dehydrogenase: II. Physiological Characterization of Plants Overexpressing the Two Enzyme Subunits Individually or Simultaneously. Plant & cell physiology, 2013, 54(10), 1635-1647. DOI : 10.1093/pcp/pct108

Vilaine, F.; Kerchev, P. I.; Clément, G., Batailler, B.; Cayla, T.; Bill, L.; Gissot, L.; Dinant, S. Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis. Plant Cell, 2013, 25 (5), 1689 -1708. DOI : 10.1105/tpc.113.111849

2012

Algire, M.A.; Montague, M.G.; Vashee, S.; Lartigue, C.; Merryman, C. A Type III restriction-modification system in Mycoplasma mycoides subsp. capri. Open Biology. 2012, 2(10):120115.  DOI: 10.1098/rsob.120115

Arunyawat, U.; Capdeville, G.; Decroocq, V.; Mariette, S. Linkage disequilibrium in French wild cherry germplasm and worldwide sweet cherry germplasm. Tree Genetics and Genomes. 2012, 8, 737-755. DOI: 10.1007/s11295-011-0460-9

Baldacci, F. ; Chang, C. ; Maucourt, M. ; Deborde, C. ; Hopkins, J. ; Lecomte, P. ; Bernillon, S. ; Brouquisse, R. ; Moing, A. ; Abad, P. ; Hérouart, D. ; Puppo, A. ; Favery, B. ; Frendo, P. (Homo)glutathione deficiency impairs root-knot nematode development in Medicago truncatula. Plos Pathogens. 2012, 8 (1) : e1002471. DOI: 10.1371/journal.ppat.1002471

Batailler, B.; Lemaître, T.; Vilaine, F.; Sanchez, C.; Renard, D.; Cayla, T.; Beneteau, J.; Dinant, S. Soluble and filamentous proteins in Arabidopsis sieve elements. Plant, Cell & Environment. 2012, 35: 1258–1273.
DOI: 10.1111/j.1365-3040.2012.02487.x

Ben Akal-Ben Fatma, Y.; Pianelli, K.; Dieuaide Noubhani, M.; Le Menn, A.; Deborde, C.; Maucourt, M.; Andrieu, M.-H.; Rolin, D.; Rothan, C.; Moing, A.; Bouzid, S.; Cabasson, C. 1H-NMR metabolomics: Profiling method for a rapid and efficient screening of transgenic plants. African Journal of Biotechnology. 2012, 11 (52), 11386-11399. DOI : 10.5897/AJB12.088

Beven. L.; Charenton, C.; Dautant, A.; Bouyssou. G.; Labroussaa, F.; Sköllermo, A.; Persson, A.; Blanchard, A.; Sirand-Pugnet, P. Specific evolution of f(1)-like ATPases in mycoplasmas. PLoS One. 2012;7(6): e38793. DOI: 10.1371/journal.pone.0038793

Beven, L.; Duret, S.; Batailler, B.; Dubrana, M.P.; Saillard, C.; Renaudin, J.; Arricau-Bouvery, N. The Repetitive Domain of ScARP3d Triggers Entry of Spiroplasma citri into Cultured Cells of the Vector Circulifer haematoceps. PloS One. 2012, 7(10): e48606. DOI: 10.1371/journal.pone.0048606

Bolser, D.M.; Chibon, P.Y.; Palopoli, N.; Gong, S.; Jacob, D.; Del Angel, V.D.; Swan, D.; Bassi, S.; González, V.; Suravajhala, P.; Hwang, S.; Romano, P.; Edwards, R.; Bishop, B.; Eargle, J.; Shtatland. T.; Provart, N.J.; Clements. D.; Renfro, D.P.; Bhak, D.; Bhak.,J. MetaBase--the wiki-database of biological databases. Nucleic Acids Res. 2012, 40(1): D1250-4. DOI : 10.1093/nar/gkr1099

Bourdon, M.; Pirrello, J.; Cheniclet, C.; Coriton, O.; Bourge, M.; Brown, S.; Moïse, A.; Peypelut, M.; Rouyère, V.; Renaudin, J.P.; Chevalier, C.; Frangne, N. Evidence for karyoplasmic homeostasis during endoreduplication and a ploidy-dependent increase in gene transcription during tomato fruit growth. Development. 2012, 139: 3817-3826. DOI: 10.1242/dev.084053

Breton, M.; Tardy, F.; Dordet-Frisoni, E.; Sagne, E.; Mick, V.; Renaudin, J.; Sirand-Pugnet, P.; Citti, C.; Blanchard, A. Distribution and diversity of mycoplasma plasmids: lessons from cryptic genetic elements. BMC Microbiology. 2012, 12(1) : 257. DOI: 10.1186/1471-2180-12-257

Calingacion, M.N.; Boualaphanh, C.; Daygon, V.D.; Anacleto, R.; Sackville Hamilton, R.; Biais, B.; Deborde, C.; Maucourt,  M.;  Moing, A.; Mumm, R.; De Vos, C.H.; Erban, A.; Kopka, J.; Hansen, T.H.; Laursen, K.H.; Schjoerring, J.K.; Hall, R.D.; Fitzgerald, M.A.  A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics. 2012, 8: 771–783. DOI: 10.1007/s11306-011-0374-4

Chaisse, E.; Foissac, X.; Verdin, E.; Nicolè, F.; Bouverat-Bernier, J.; Jagoueix-Eveillard, S.; Semetey, O.; Gaudin, J.; Fontaine, M.; Danet, J.-L.; Moja, S.; Conord , C.; Jullien , F.; Legendre , L.; Gallois, P. Amélioration des stratégies de lutte contre le dépérissement de la lavande et du lavandin. Innovations Agronomiques, 2012, 25: 179-192.

Cosson, P.; Schurdi-Levraud, V.; Le, QH.; Sicard, O.; Caballero, M.; Roux, F.; Le Gall, O.; Candresse, T.; Revers, F. The RTM Resistance to Potyviruses in Arabidopsis thaliana: Natural Variation of the RTM Genes and Evidence for the Implication of Additional Genes. PLoS ONE. 2012, 7(6): e39169. DOI: 10.1371/journal.pone.0039169

Dal Santo, S.; Stampfl, H.; Krasensky, J.; Kempa, S.; Gibon, Y.; Petutschnig, E.; Rozhon, W.; Heuck, A.; Clausen, T.; Jonak, C. Stress-Induced GSK3 Regulates the Redox Stress Response by Phosphorylating Glucose-6-Phosphate Dehydrogenase in Arabidopsis. Plant Cell. 2012, 24: 3380-3392. DOI: 10.1105/tpc.112.101279

Diamanti, J.; Capocasa, F.; Denoyes, B.; Petit, A.; Charter, P.; Faedi, W.; Maltoni, M.; Battino, M.; Mezzetti, B. (2012). Standardized method for evaluation of strawberry (Fragaria x ananassa Duch.) germplasm collections as a genetic resource for fruit nutritional compounds. Journal of Food Composition and Analysis. 2012, 28 (2): 170-178. DOI: 10.1016/j.jfca.2012.07.007

Dupuy, V.; Manso-Silvan, L.; Barbe, V.; Thebault, P.; Dordet-Frisoni, E.; Citti, C.; Poumarat, F.; Blanchard, A.; Breton, M.; Sirand-Pugnet, P. et al. Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony". PloS one. 2012, 7(10): e46821. DOI: 10.1371/journal.pone.0046821

Fitzpatrick, T.B. ; Basset, G.J.C. ; Borel, P. ; Carrari, F. ; DellaPenna, D. ; Fraser, P.D. ; Hellmann, H. ; Osorio, S. ; Rothan, C. ; Valpuesta, V. ; Veyrat, C. ; Fernie, A.R. Vitamin deficiencies in humans: can plant science help?. Plant Cell. 2012,  : 20 p. DOI: 10.1105/tpc.111.093120

Fontaine, J.-X.; Tercé-Laforgue, T.; Armengaud, P.; Clément, G.; Renou, J.-P.; Pelletier, S.; Catterou, M.; Azzopardi, M.; Gibon, Y.; Lea, P. J.; Hirel, B.; Dubois, F.  Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell, 2012, 24 (10): 4044-4065. DOI : 10.1105/tpc.112.103689

Girard, A.-L.; Mounet, F.; Lemaire-Champley, M.; Gaillard, C.; Elmorjani, K.; Vivancos, J.; Runavot, J.-L.; Quemener, B.; Petit, J.; Germain, V.; Rothan, C.; Marion, D.; Bakan, B. Tomato GDSL1 is required for cutin deposition in the fruit cuticle. Plant Cell, 2012, 24 : 3119-3134. DOI: 10.1105/tpc.112.101055

Guillet, C.; Aboul-Soud, M.A.; Le Menn, A.; Viron. N.; Pribat, A.; Germain, V.; Just, D.; Baldet, P.; Rousselle, P.; Lemaire-Chamley, M.; Rothan, C. Regulation of the Fruit-Specific PEP Carboxylase SlPPC2 Promoter at Early Stages of Tomato Fruit Development. PLoS One. 2012, 7(5): e36795. DOI: 10.1371/journal.pone.0036795

Hädrich, N.; Hendriks, J.H.M.; Kötting, O.; Arrivault, S.; Feil, R.; Zeeman, S.C.; Gibon, Y.; Schulze, W.X.; Stitt, S.; Lunn, J.E. Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. Plant Journal. 2012, 70: 231-242. DOI: 10.1111/j.1365-313X.2011.04860.x

Iwata, H. ; Gaston, A. ; Remay, A. ; Thouroude, T. ; Jeauffre, J. ; Kawamura, K. ; Hibrand-Saint Oyant, L. ; Araki, T. ; Denoyes-Rothan, B. ; Foucher, F. The TFL1 homologue KSN is a regulator of continuous flowering in rose and strawberry. Plant Journal. 2012, 69 (1) : 116-125. DOI: 10.1111/j.1365-313X.2011.04776.x

Johannesen, J.; Foissac, X.; Kehrli, P.; Maixner, M. Impact of Vector Dispersal and Host-Plant Fidelity on the Dissemination of an Emerging Plant Pathogen. PLoS ONE. 2012, 7(12): e51809. DOI: 10.1371/journal.pone.0051809

Lerceteau-Köhler, E. ; Moing, A. ; Guérin, G. ; Renaud, C. ; Petit, A. ; Rothan, C. ; Denoyes, B. Genetic dissection of fruit quality traits in the octoploid cultivated strawberry highlights the role of homoeo-QTL in their control. Theoretical and Applied Genetics. 2012, 124 (6) : 1059-1077. DOI: 10.1007/s00122-011-1769-3

Marais, A. ; Svanella-Dumas, L. ; Barone, M. ; Gentit, P. ; Faure, C. ; Charlot, G. ; Ragozzino, A. ; Candresse, T. Development of a polyvalent RT-PCR detection assay covering the genetic diversity of Cherry capillovirus A. Plant Pathology. 2012, 61 (1) : 195-204. DOI: 10.1111/j.1365-3059.2011.02488.x

Mathioudakis, M.M. ; Candresse, T. ; Barone, M. ; Ragozzino, A. ; Katis, N.I. Cydonia japonica, Pyrus calleryana and P. amygdaliformis: three new ornamental or wild hosts of Apple stem pitting virus. Virus Genes. 2012, 44 (2) : 319-322. DOI: 10.1007/s11262-011-0682-9

Montague, M.G.; Lartigue, C.; Vashee, S. Synthetic genomics: potential and limitations. Curr Opin Biotechnol. 2012, 23 (5) : 659-665. DOI: 10.1016/j.copbio.2012.01.014

Mounet, F.; Moing, A.; Kowalczyk, M.; Rohrmann, J.; Petit, J.; Garcia, V.; Maucourt, M.; Yano, K.; Deborde, C.; Aoki, K.; Berges, H.; Granell, A.; Fernie, A. R.; Bellini, C.; Rothan, C.; Lemaire-Chamley, M. Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. Journal of Experimental Botany, 2012, 63: 4901-4917. DOI: 10.1093/jxb/ers167

Omar, A.F.; Foissac, X. Occurrence and incidence of phytoplasmas of the 16SrII-D subgroup on solanaceous and cucurbit crops in Egypt. European Journal of Plant Pathology, 2012, 133: 353-360. DOI: 10.1007/s10658-011-9908-x

Pagny, G.; Paulstephenraj, P. S.; Poque, S.; Sicard, O.; Cosson, P.; Eyquard, J.-P.; Caballero, M.; Chague, A.; Gourdon, G.; Negrel, L.; Candresse, T.; Mariette, S.; Decroocq, V. Family-based linkage and association mapping reveals novel genes affecting Plum pox virus infection in Arabidopsis thaliana. New Phytologist. 2012, 196 : 873–886. DOI: 10.1111/j.1469-8137.2012.04289.x

Perraki, A.;  Cacas, J. L.;  Crowet, J. M.;  Lins, L.;  Castroviejo, M.; German-Retana, S.; Mongrand, S.; Raffaele, S. Plasma membrane localization of solanum tuberosum remorin from group 1, homolog 3 is mediated by conformational changes in a novel C-terminal anchor and required for the restriction of potato virus X movement]. Plant Physiol. 2012, 160 : 624-37. DOI: 10.1104/pp.112.200519

Poorter, H.; Fiorani, F.; Stitt, M.; Schurr, U.; Finck, A.; Gibon, Y.; Usadel, B.; Munns, R.; Atkin, O. K.; Tardieu, F.; Pons, T. L. The art of growing plants for experimental purposes: a practical guide for the plant biologist. Functional Plant Biology. 2012, 39: 821–838. DOI: 10.1071/FP12028

Predajňa, L.; Šubr, Z.; Candresse, T.; Glasa, M. Evaluation of the genetic diversity of Plum pox virus in a single plum tree. Virus research. 2012, 167 (1), 112-7. DOI : 10.1016/j.virusres.2012.04.002

Pribat, A.; Sormani, R.; Rousseau-Gueutin, M.; Julkowska, M.M.; Testerink, C.; Joubès, J.; Castroviejo, M.; Laguerre, M; Meyer, C.; Germain, V.; Rothan, C. A novel class of PTEN protein in Arabidopsis displays unusual phosphoinositide phosphatase activity and efficiently binds phosphatidic acid. Biochemical Journal. 2012, 441 (1) : 161-171. DOI: 10.1042/BJ20110776

Safarova, D.; Navratil, M.; Faure, C.; Candresse, T.; Marais, A. First Report of Apricot pseudo-chlorotic leaf spot virus Infecting Plum (Prunus domestica) in the Czech Republic. Plant Disease. 2012, 96 (3) : 461. DOI: 10.1094/PDIS-10-11-0844

Sansone, S.A. ; Rocca-Serra, P. ; Field, D. ; Maguire, E. ; Taylor, C. ; Hofmann, O. ; Fang, H. ; Neumann, S. ; Tong, W. ; Amaral-Zettler, L. ; Begley, K. ; Booth, T. ; Bouguerelet, L. ; Burns, G. ; Chapman, B. ; Clark, T. ; Coleman, L.A. ; Copeland, J. ; Das, S. ; de Daruvar, A. ; de Matos, P. ; Dix, I. ; Edmunds, S. ; Evelo, C.T. ; Forster, M.J. ; Gaudet, P. ; Gilbert, J. ; Goble, C. ; Griffin, J.L. ; Jacob, D. ; Kleinjans, J. ; Harland, L. ; Haug, K. ; Hermjakob, H. ; Ho Sui, S.J. ; Laederach, A. ; Liang, S. ; Marshall, S. ; McGrath, A. ; Merril, E. ; Reilly, Dorothy ; Roux, M. ; Shamu, C.E. ; Shang, C.A. ; Steinbeck, C. ; Trefethen, A. ; Williams-Jones, B. ; Wolstencroft, K. ; Xenarios, J. ; Hide, W. Toward interoperable bioscience data. Nature Genetics. 2012, 44 (2) : 121-126. DOI: 10.1038/ng.1054

Sato, S.; Tabata, S.; Hirakawa, H.; et al./ Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution.Nature. 2012, 485 (7400) : 635-641. DOI: 10.1038/nature11119

Stoeckel, S. ; Klein, E. ; Oddou-Muratorio, S. ; Musch, B. ; Mariette, S. Microevolution Of S-Allele Frequencies In Wild Cherry Populations: Respective Impacts Of Negative Frequency Dependent Selection And Genetic Drift. Evolution. 2012, 66 (2) : 486-504. DOI: 10.1111/j.1558-5646.2011.01457.x

Sturbois, B. ; Dubrana-Ourabah, M.P. ; Gombert, J. ; lasseur, B. ; Macquet, A. ; Faure, C. ; Bendahmane, A. ; Baures, I. ; Candresse, T. Identification and characterization of tomato mutants affected in the Rx-mediated resistance to PVX isolates. Molecular Plant Microbe Interactions. 2012, 25 (3) : 341-354. DOI: 10.1094/MPMI-07-11-0181

Tardy, F.; Baranowski, E.; Nouvel, X.; Mick, V.; Manso-Silvan, L.; Thiaucourt, F.; Thébault, P.; Breton, M.; Sirand-Pugnet, P.; Blanchard, A.; Garnier, A.; Gibert, P.; Game, Y.; Poumarat, F.; Citti, C. Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode. Applied and Environmental Microbiology. 2012, 78, 4659-4668.

Tavert-Roudet, G. ; Abdul Razzak, A. ; Doublet, B. ; Walter, J. ; Delaunay, T. ; Michon, T. ; Le Gall, O. ; Candresse, T. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. Journal of General Virology. 2012, 93 (1) : 184-193. DOI: 10.1099/vir.0.035881-0

Zhou, T.; Zhang, H.; Lai, T.; Qin, C.; Shi, N.; Wang, H.; Jin, M.; Zhong, S.; Fan, Z.; Liu, Y.; Wu, Z.; Jackson, S.; Giovannoni, J. J.; Rolin, D.; Gallusci, P.; Hong, Y. Virus-induced gene complementation reveals a transcription factor network. Sci Rep. 2012, 2, 836. DOI: 10.1038/srep00836

2011

Allen, E.; Moing, A ; Wattis, J.A. ; Larson, T. ; Maucourt, M. ; Graham, I.A.,; Rolin, D. ; Hooks, M.A. Evidence that ACN1 (acetate non-utilizing 1) prevents carbon leakage from peroxisomes during lipid mobilization in Arabidopsis seedlings. Biochemical Journal. 2011, 437 (3) : 505-513

Balakishiyeva, G. ; Qurbanov, M. ; Mammadov, A. ; Bayramov, S. ; Aliyev, J. ; Foissac, X. Detection of ‘Candidatus Phytoplasma brasiliense’ in a new geographic region and existence of two genetically distinct populations’. European Journal of Plant Pathology. 2011, 130 (4) : 457-462.

Beurton-Aimar, M. ; Beauvoit, B. ; Monier, A. ; Vallée, F. ; Dieuaide Noubhani, M. ; Colombie, S. Comparison between Elementary Flux Modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells. BMC Systems Biology. 2011, 5 : 95.

Boulila-Zoghlami, L. ; Gallusci, P. ; Holzer, F.M. ; Basset, G.J. ; Djebali, W. ; Chaïbi, W. ; Walling, L.L. ; Brouquisse, R. Up-regulation of leucine aminopeptidase-A in cadmium-treated tomato roots. Planta. 2011, 234 (4) : 857-863.

Bourdon, M. ; Coriton, O. ; Pirrello, J. ; Cheniclet, C. ; Brown, S.C. ; Poujol, C. ; Chevalier, C. ; Renaudin, J.P. ; Frangne, N. In planta quantification of endoreduplication using fluorescent in situ hybridization (FISH). Plant Journal. 2011, 66 (6) : 1089-1099.

Breton, M. ; Duret, S. ; Danet, J.L. ; Beven, L. ; Dubrana, M.P. ; Renaudin, J. I-SceI-mediated plasmid deletion and intra-molecular recombination in Spiroplasma citri. Journal of Microbiological Methods. 2011, 84 (2) : 216-222.

Candresse, T. ; Saenz, P. ; Garcia, J.A. ; Boscia, D. ; Navratil, M. ; Gorris, M.T. ; Cambra, M. Analysis of the Epitope Structure of Plum pox virus Coat Protein. Phytopathology. 2011, 101 (5) : 611-619.

Chevalier, C. ; Nafati, M. ; Mathieu-Rivet, E. ; Bourdon, M. ; Frangne, N. ; Cheniclet, C. ; Renaudin, J.P. ; Gevaudant, F. ; Hernould, M. Elucidating the functional role of endoreduplication in tomato fruit development. Annals of Botany. 2011, 107 (7) : 1159-1169.

Danet, J.L. ; Balakishiyeva, G. ; Cimerman, A. ; Sauvion, N. ; Marie-Jeanne, V. ; Labonne, G. ; Lavina, A. ; Batlle, A. ; Krizanac, I. ; Skoric, D. ; Ermacora, P. ; Serce, U.C. ; Caglayan, K. ; Jarausch, W. ; Foissac, X. Multilocus sequence analysis reveals the genetic diversity of European fruit tree phytoplasmas and supports the existence of inter-species recombination. Microbiology. 2011, 157 (2) : 438-450.

Depege-Fargeix, N. ; Javelle, M. ; Chambrier, P. ; Frangne, N. ; Gerentes, D. ; Perez, P. ; Rogowsky, P. ; Vernoud, V. Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize. Journal of Experimental Botany. 2011, 62 (1) : 293-305.

Dielen, A.S. ; Sassaki, F.T. ; Walter, J. ; Michon, T. ; Menard, G. ; Pagny, G. ; Krause-Sakate, R. ; Maia, I.G. ; Badaoui, S. ; Le Gall, O. ; Candresse, T. ; German-Retana, S. The 20S proteasome α5 subunit of Arabidopsis thaliana carries an RNase activity and interacts in planta with the Lettuce mosaic potyvirus HcPro protein. Molecular Plant Pathology. 2010, 12 (2) : 137-150.

Dulaurent, A.M. ; Rossi, J.P. ; Deborde, C. ; Moing, A. ; Menassieu, P. ; Jactel, H. Honeydew feeding increased the longevity of two egg parasitoids of the pine processionary moth. Journal of Applied Entomology. 2011, 135 (3) : 184-194.

Fabre, A.M. ; Danet, J.L. ; Foissac, X. The stolbur phytoplasma antigenic membrane protein gene stamp is submitted to diversifying positive selection. Gene. 2011, 472 (1-2) : 37-41.

Ferry-Dumazet, H. ; Gil, L. ; Deborde, C. ; Moing, A. ; Bernillon, S. ; Rolin, D. ; Nikolski, M. ; de Daruvar, A. ; Jacob, D. MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles. BMC Plant Biology. 2011, 11 : 104 (pp1-12).

Glasa, M. ; Malinowski, T. ; Predajna, L. ; Pupola, N. ; Dekena, D. ; Michalczuk, L. ; Candresse, T. Sequence variability, recombination analysis, and specific detection of the W strain of Plum pox virus. Phytopathology. 2011, 101 (8) : 980-985.

Hädrich, N. ; Gibon, Y. ; Schudoma, C. ; Altmann, T. ; Lunn, J.E. ; Stitt, M. Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. Journal of Plant Physiology. 2011, 168 (12) : 1395-1405.

Horchani, F. ; Prévot, M. ; Boscari, A. ; Evangelisti, E. ; Meilhoc, E. ; Bruand, C. ; Raymond, P. ; Boncompagni, É. ; Aschi-Smiti, S. ; Puppo, A. ; Brouquisse, R. Both plant and bacterial nitrate reductase contribute to nitric oxide production in Medicago truncatula nitrogen-fixing nodules. Plant Physiology. 2011, 155 (2) : 1023-1036.

Illa, E. ; Eduardo, I. ; Audergon, J.M. ; Barale, F. ; Dirlewanger, E. ; Xiongwei Li ; Moing, A. ; Lambert, P. ; Le Dantec, L. ; Zhongshan Gao ; Poëssel, J.L. ; Pozzi, C. ; Rossini, L. ; Vecchietti, A. ; Arus, P. ; Howad, W. Saturating the Prunus (Stone fruits) genome with candidate genes for fruit quality. Molecular Breeding. 2011, 28 (4) : 667-682. DOI : 10.1007/s11032-010-9518-x

Jiménez, S. ; Ollat, N. ; Deborde, C. ; Maucourt, M. ; Rellán-Álvarez, R. ; Moreno, M.Á. ; Gogorcena, Y. Metabolic response in roots of Prunus rootstocks submitted to iron chlorosis. Journal of Plant Physiology. 2011, 168 (5) : 415-423.

Labroussaa, F. ; Dubrana, M.P. ; Arricau-Bouvery, N. ; Beven, L. ; Saillard, C. Involvement of a minimal actin-binding region of Spiroplasma citri phosphoglycerate kinase in spiroplasma transmission by its leafhopper vector. Plos One. 2011, 6 (2) : e17357 : 1-7.

Lebouvier, M. ; Laparie, M. ; Hullé, M. ; Marais-Colombel, A. ; Cozic, Y. ; Lalouette, L. ; Vernon, P. ; Candresse, T. ; Frenot, Y. ; Renault, D. The significance of the sub-Antarctic Kerguelen Islands for the assessment of the vulnerability of native communities to climate change, alien insect invasions and plant viruses. Biological Invasions. 2011, 13 : 1195-1208.

Lemaître, C.; Barré, A.; Citti, C.; Tardy, F.; Thiaucourt, F.; Sirand-Pugnet, P.; Thébault, P. A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships. BMC Bioinformatics, 2011, 12. DOI : 10.1186/1471-2105-12-457

Malembic-Maher, S. ; Salar, P. ; Filippin, L. ; Carle, P. ; Angelini, E. Genetic diversity of European phytoplasmas of the 16SrV taxonomic group and proposal of ‘Candidatus Phytoplasma rubi’. International Journal of Systematic and Evolutionary Microbiology. 2011, 61 (9) : 2129-2134.

Marais, A. ; Faure, C. ; Deogratias, J.M. ; Candresse, T. First Report of Chrysanthemum stunt viroid in various cultivars of Argyranthemum frutescens in France. Plant Disease. 2011, 95 (9) : 1196.

Melser, S. ; Molino, D. ; Batailler, B. ; Peypelut, M. ; Laloi, M. ; Wattelet-Boyer, V. ; Bellec, Y. ; Faure, J.D. ; Moreau, P. Links between lipid homeostasis, organelle morphodynamics and protein trafficking in eukaryotic and plant secretory pathways. Plant Cell Reports. 2011, 30 (2) : 177-193.

Moing, A. ; Aharoni, A. ; Biais, B. ; Rogachev, I. ; Meir, S. ; Brodsky, L. ; Allwood, J.W. ; Erban, A. ; Dunn, W.B. ; Kay, L. ; de Koning, S. ; de Vos, R.C.H. ; Jonker, H. ; Mumm, R. ; Deborde, C. ; Maucourt, M. ; Bernillon, S. ; Gibon, Y. ; Hansen, T.H. ; Husted, S. ; Goodacre, R. ; Kopka, J. ; Schjoerring, J.K. ; Rolin, D. ; Hall, R.D. Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytologist. 2011, 190 (3) : 683-696.

Muller, B. ; Pantin, F. ; Génard, M. ; Turc, O. ; Freixes, S. ; Piques, M. ; Gibon, Y. Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs. Journal of Experimental Botany. 2011, 62 (6) : 1715-1729.

Nafati, M. ; Cheniclet, C. ; Hernould, M. ; Do, P.T. ; Fernie, A.R. ; Chevalier, C. ; Gevaudant, F. The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth. Plant Journal. 2011, 65 (4) : 543-556.

Neily, M.H. ; Baldet, P. ; Arfaoui, I. ; Saito, T. ; Li, Q.L. ; Asamizu, E. ; Matsukura, C. ; Moriguchi, T. ; Ezura, H. Overexpression of apple spermidine synthase 1 (MdSPDS1) leads to significant salt tolerance in tomato plants. Plant Biotechnology. 2011, 28 (1) : 33-42.

Neily, M.H. ; Matsukura, C. ; Maucourt, M. ; Bernillon, S. ; Deborde, C. ; Moing, A. ; Yin, Y.G. ; Saito, T. ; Mori, K. ; Asamizu, E. ; Rolin, D. ; Moriguchi, T. ; Ezura, H. Enhanced polyamine accumulation alters carotenoid metabolism at the transcriptional level in tomato fruit over-expressing spermidine synthase. Journal of Plant Physiology. 2011, 168 (3) : 242-252.

Okabe, Y. ; Asamizu, E. ; Saito, T. ; Matsukura, C. ; Ariizumi, T. ; Bres, C. ; Rothan, C. ; Mizoguchi, T. ; Ezura, H. Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries. Plant and Cell Physiology. 2011, 52 (11) : 1994-2005.

Omidi, M.; Hosseini-Pour, A.; Rahimian, H.; Massumi, H.; Saillard, C. Identification of Circulifer haematoceps (Hemiptera:Cicadellidae) as vector of Spiroplasma citri in the Kerman province of Iran. Journal of Plant Pathology. 2011, 93 (1) : 167-172. DOI : doi: doi: 10.4454/jpp.v93i1.287

Ravelonandro, M. ; Scorza, R. ; Briard, P. ; Lafargue, B. ; Renaud, R. Inheritance of silencing in transgenic plums. [Communication écrite]. International symposium on Plum pox virus ; 2010/09/05-09 ; Sofia (BGR). Kamenova, I. (Editeur). Proceedings of the International Symposium on Plum Pox Virus. Louvain (BEL) : ISHS - International Society for Horticultural Science ; Acta Horticulturae. 2011, 899 : 139-144.

Scholthof, K.B.G. ; Adkins, S. ; Czosnek, H. ; Palukaitis, P. ; Jacquot, E. ; Hohn, T. ; Hohn, B. ; Saunders, K. ; Candresse, T. ; Ahlquist, P. ; Hemenway, C. ; Foster, G.D. Top 10 plant viruses in molecular plant pathology. Molecular Plant Pathology. 2011, 12 (9) : 938-954.

Steinhauser, M.C. ; Steinhauser, D. ; Gibon, Y. ; Bolger, M. ; Arrivault, S. ; Usadel, B. ; Zamir, D. ; Fernie, A.R. ; Stitt, M. Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum x Solanum pennellii Introgression Line Population. Plant Physiology. 2011, 157 (3) : 998-1014.

Thiaucourt, F. ; Manso-Silvan, L. ; Salah, W. ; Barbe, V. ; Vacherie, B. ; Jacob, D. ; Breton, M. ; Dupuy, V. ; Lomenech, A.M. ; Blanchard, A. ; Sirand-Pugnet, P. Mycoplasma mycoides, from “mycoides Small Colony” to “capri”. A microevolutionary perspective. BMC Genomics. 2011, 12 : 114 : 1-19.

Truchetet, M.E. ; Beven, L. ; Renaudin, H. ; Douchet, I. ; Férandon, C. ; Charron, A. ; Blanco, P. ; Schaeverbeke, T. ; Contin-Bordes, C. ; Bébéar, C. Potential role of Mycoplasma hominis in Interleukin (IL)–17–Producing CD4+ T-Cell generation via induction of IL-23 secretion by human dendritic cells. Journal of Infectious Diseases. 2011, 204 (11) : 1796-1805. DOI : 10.1093/infdis/jir630

Voxeur, A. ; Gilbert, L. ; Rihouey, C. ; Driouich, A. ; Rothan, C. ; Baldet, P. ; Lerouge, P. Silencing of the GDP-D-mannose 3,5-epimerase affects the structure and cross-linking of the pectic polysaccharide rhamnogalacturonan II and plant growth in tomato. Journal of Biological Chemistry. 2011, 286 (10) : 8014-8020.

Wiesyk, A. ; Candresse, T. ; Zagorski, W. ; Gora-Sochaka, A. Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome. Journal of General Virology. 2011,  : 457-466.

Youssef, F. ; Marais, A. ; Faure, C. ; Barone, M. ; Gentit, P. ; Candresse, T. Characterization of Prunus-infecting Apricot latent virus-like Foveaviruses: Evolutionary and taxonomic implications. Virus Research. 2011, 155 (2) : 440-445.

Youssef, F. ; Marais, A. ; Faure, C. ; Gentit, P. ; Candresse, T. Strategies to facilitate the development of uncloned or cloned infectious full-length viral cDNAs : Apple chlorotic leaf spot virus as a case study. Virology Journal. 2011, 8 : 488.

Zagrai, I. ; Ravelonandro, M. ; Gaboreanu, I. ; Ferencz, B. ; Scorza, R. ; Zagrai, L. ; Kelemen, B. ; Pamfil, D. ; Popescu, O. Transgenic plums expressing plum pox virus coat protein gene do not assist the development of virus recombinants under field conditions. Journal of Plant Pathology. 2011, 93 (1) : 159-165.

Zagrai, I. ; Ravelonandro, M. ; Zagrai, L. ; Scorza, R. ; Minoiu, N. Overview of the investigations of transgenic plums in Romania. [Communication écrite]. International symposium on Plum pox virus ; 2010/09/05-09 ; Sofia (BGR). Kamenova, I. (Editeur). Proceedings of the International Symposium on Plum Pox Virus. Louvain (BEL) : ISHS - International Society for Horticultural Science ; Acta Horticulturae. 2011, 899 : 153-158.

Zoghlami, L. B. ; Djebali, W. ; Abbes, Z. ; Hediji, H. ; Maucourt, M. ; Moing, A. ; Brouquisse, R. ; Chaibi, W. Metabolite modifications in Solanum lycopersicum roots and leaves under cadmium stress. African Journal of Biotechnology. 2011, 10 :567-579
 

2010

Allen, E. ; Moing, A. ; Ebbels, T.M.D. ; Maucourt, M. ; Tomos, A.D. ; Rolin, D. ; Hooks, M.A. Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Systems Biology. 2010, 4 : 62 : 1-16.

Balakishiyeva, G.; al. First report of phytoplasma infections in several temperate fruit trees and vegetable crops in Azerbaijan.Journal of Plant Pathology. 2010, 92: S115.

Biais, B. ; Beauvoit, B. ; Allwood, W. ; Deborde, C. ; Maucourt, M. ; Goodacre, R. ; Rolin, D. ; Moing, A. Metabolic acclimation to hypoxia revealed by metabolite gradients in melon fruit. Journal of Plant Physiology. 2010, 167 (3) : 242-245.

Breton, M. ; Duret, S. ; Danet, J.L. ; Dubrana, M.P. ; Renaudin, J. Sequences essential for transmission of Spiroplasma citri by its leafhopper vector, Circulifer haematoceps, revealed by plasmid curing and replacement based on incompatibility. Applied and Environmental Microbiology. 2010, 76 (10) : 3198-3205.

Breton, M. ; Sagne, É. ; Duret, S. ; Beven, L. ; Citti, C. ; Renaudin, J. First report of a tetracycline-inducible gene expression system for mollicutes. Microbiology SGM. 2010, 156 (1) : 198-205.

Candresse, T. ; Marais, A. ; Faure, C. ; Dubrana, M.P. ; Gombert, J. ; Bendahmane, A. Multiple coat protein mutations abolish recognition of Pepino mosaic potexvirus (PepMV) by the potato rx resistance gene in transgenic tomatoes. Molecular Plant Microbe Interactions. 2010, 23 (4) : 376-383.

Candresse, T. ; Marais, A. ; Tassus, X. ; Suhard, P. ; Renaudin, I. ; Leguay, A. ; Poliakoff, F. ; Blancard, D. First report of Tomato chlorotic dwarf viroid in tomato in France. Plant Disease. 2010, 94 (5) : 633.

Candresse, T. ; Marais, A. ; Youssef, F. ; Faure, C. ; Svanella, L. ; Ben Amor, A. ; Couture, C. Approches pour l’identification sans à priori de nouveaux virus phytopathogènes : application à l’étude de l’étiologie de maladies des plantes et à l’étude du métagénome viral. 12. Journées francophones de virologie ; 2010/03/18-19 ; Paris (FRA). Virologie. 2010, 14 (1) : 27.

Carle, P. ; Saillard, C. ; Carrère, N. ; Carrere, S. ; Duret, S. ; Eveillard, S. ; Gaurivaud, P. ; Gourgues, G. ; Gouzy, J. ; Salar, P. ; Verdin, E. ; Breton, M. ; Blanchard, A. ; Laigret, F. ; Bové, J.M. ; Renaudin, J. ; Foissac, X. Partial Chromosome Sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay. Applied and Environmental Microbiology. 2010, 76 (11) : 3420-3426.

Champagne, A. ; Bernillon, S. ; Moing, A. ; Rolin, D. ; Legendre, L. ; Lebot, V. Carotenoid profiling of tropical root crop chemotypes from Vanuatu, South Pacific. Journal of Food Composition and Analysis. 2010, 23 (8) : 763-771.

Chuche, J. ; Danet, J.L. ; Thiery, D. First description of the occurrence of the leafhopper phlogotettix cyclops in a Bordeaux vineyard. Journal International des Sciences de la Vigne et du Vin. 2010, 44 (3) : 161-165.

Cosson, P. ; Sofer, L. ; Le, Q.H. ; Léger, V. ; Schurdi-Levraud, V. ; Whitham, S.A. ; Yamamoto, M.L. ; Gopalan, S. ; Le Gall, O. ; Candresse, T. ; Carrington, J.C. ; Revers, F. RTM3 which controls long distance movement of potyviruses is a member of a new plant gene family encoding a meprin and TRAF homology (MATH) domain-containing protein. Plant Physiology. 2010, 154 (1) : 222-232.

Cosson, P. ; Sofer, L. ; Schurdi-Levraud, V. ; Revers, F. A member of a new plant gene family encoding a meprin and TRAF homology (MATH) domain-containing protein is involved in restriction of long distance movement of plant viruses. Plant Signaling and Behavior. 2010, 5 (10) : 1321-1323.

Dielen, A.S. ; Badaoui, S. ; Candresse, T. ; German-Retana, S. The ubiquitin/26S proteasome system in plant–pathogen interactions: a never-ending hide-and-seek game. Molecular Plant Pathology. 2010, 11 (2) : 293-308.

Duret, S. ; Batailler, B. ; Danet, J.L. ; Beven, L. ; Renaudin, J. ; Arricau-Bouvery, N. Infection of the Circulifer haematoceps cell line Ciha-1 by Spiroplasma citri: the non-insect-transmissible strain 44 is impaired in invasion. Microbiology SGM. 2010, 156 : 1090-1107.

Gallois, J.L. ; Charron, C. ; Sanchez, F. ; Pagny, G. ; Houvenaghel, M.C. ; Moretti, A. ; Ponz, F. ; Revers, F. ; Caranta, C. ; German-Retana, S. Single amino acid changes in the turnip mosaic virus viral genome-linked protein (VPg) confer virulence towards Arabidopsis thaliana mutants knocked out for eukaryotic initiation factors eIF(iso)4E and eIF(iso)4G. Journal of General Virology. 2010, 91 (1) : 288-293.

Hediji, H. ; Djebali, W. ; Cabasson, C. ; Maucourt, M. ; Baldet, P. ; Bertrand, A. ; Zoghlami, L.B. ; Deborde, C. ; Moing, A. ; Brouquisse, R. ; Chaibi, W. ; Gallusci, P. Effects of long-term cadmium exposure on growth and metabolomic profile of tomato plants. Ecotoxicology and Environmental Safety. 2010, 73 (8) : 1965-1974.

Horchani, F. ; Stammitti-Bert, L. ; Baldet, P. ; Brouquisse, R. ; Rolin, D. ; Aschi-Smiti, S. ; Raymond, P. ; Gallusci, P. Effect of prolonged root hypoxia on the antioxidant content of tomato fruit. Plant Science. 2010, 179 (3) : 209-218.

Hummel, I. ; Pantin, F. ; Sulpice, R. ; Piques, M. ; Rolland, G. ; Dauzat, M. ; Christophe, A. ; Pervent, M. ; Bouteillé, M. ; Stitt, M. ; Gibon, Y. ; Muller, B. Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis. Plant Physiology. 2010, 154 (1) : 357-372.

Kang, P.J. ; Beven, L. ; Hariharan, S. ; Park, H.O. The Rsr1/Bud1 GTPase interacts with itself and the Cdc42 GTPase during bud-site selection and polarity establishment in budding yeast. Molecular Biology of the Cell. 2010, 21 (17) : 3007-3016.

Labroussaa, F. ; Arricau-Bouvery, N. ; Dubrana, M.P. ; Saillard, C. Entry of Spiroplasma citri into Circulifer haematoceps cells involves interaction between spiroplasma phosphoglycerate kinase and leafhopper actin. Applied and Environmental Microbiology. 2010, 76 (6) : 1879-1886.

Marais, A. ; Faure, C. ; Candresse, T. ; Hullé, M. First report of Nasturtium as a natural host of Cherry leaf roll virus on Amsterdam island. Plant Disease. 2010, 94 (4) : 477.

Mathieu-Rivet, E. ; Gevaudant, F. ; Sicard, A. ; Salar, S. ; Do, P.T. ; Mouras, A. ; Fernie, A.R. ; Gibon, Y. ; Rothan, C. ; Chevalier, C. ; Hernould, M. Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato. Plant Journal. 2010, 62 (5) : 727-741.

Michon, T. Contrôle d’assemblages supramoléculaires spontanés à partir de bio-composites. Nanotechnologies Bio-Inspirées. 2010, 3 : 18-19.

Michon, T. Une cage protéique pH dépendante pour le transport de médicaments. Nanotechnologies Bio-Inspirées. 2010, 3 : 19-21.

Michon, T. Des aptamers bifonctionnels interrupteurs moléculaires. Nanotechnologies Bio-Inspirées. 2010, 3 : 23.

Michon, T. Contrôle cinétique de l’assemblage de nanoparticules protéiques. Nanotechnologies Bio-Inspirées. 2010, 3 : 9-10.

Murolo, S. ; Marcone, C. ; Prota, V. ; Garau, R. ; Foissac, X. ; Romanazzi, G. Genetic variability of the stolbur phytoplasma vmp1 gene in grapevines, bindweeds and vegetables. Journal of Applied Microbiology. 2010, 109 (6) : 2049-2059.

Nafati, M. ; Frangne, N. ; Hernould, M. ; Chevalier, C. ; Gevaudant, F. Functional characterization of the tomato cyclin-dependent kinase inhibitor SlKRP1 domains involved in protein–protein interactions. New Phytologist. 2010, 188 (1) : 136-149.

Nouvel, L.X. ; Sirand-Pugnet, P. ; Marenda, M.S. ; Sagne, É. ; Barbe, V. ; Mangenot, S. ; Schenowitz, C. ; Jacob, D. ; Barré, A. ; Claverol, S. ; Blanchard, A. ; Citti, C. Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics. 2010, 11 (86) : 19 p..

Parent, B. ; Turc, O. ; Gibon, Y. ; Tardieu, F. Modelling temperature-compensated physiological rates, based on the co-ordination of responses to temperature of developmental processes. Journal of Experimental Botany. 2010, 61 (8) : 2057-2069.

Pilarova, P.; Marandel, G.; Decroocq, V.; Salava, J.; Krska, B.; Abbott, A. G. Quantitative trait analysis of resistance to plum pox virus in the apricot F1 progeny "Harlayne" x "Vestar" . Tree Genetics and Genomes, 2010, 6 (3), 467-475.  DOI : 10.1007/s11295-009-0264-3

Pracharoenwattana, I. ; Zhou, W. ; Keech, O. ; Francisco, P.B. ; Udomchalothorn, T. ; Tschoep, H. ; Stitt, M. ; Gibon, Y. ; Smith, S.M. Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen. Plant Journal. 2010, 62 (5) : 785-795.

Prudent, M. ; Bertin, N. ; Génard, M. ; Munos, S. ; Rolland, S. ; Garcia, V. ; Petit, J. ; Baldet, P. ; Rothan, C. ; Causse, M. Genotype-dependent response to carbon availability in growing tomato fruit. Plant Cell and Environment. 2010, 33 (7) : 1186-1204.

Rippa, S. ; Eid, M. ; Formaggio, F. ; Toniolo, C. ; Beven, L. Hypersensitive-like response to the Pore-Former Peptaibol Alamethicin in Arabidopsis thaliana. ChemBioChem a European Journal of Chemical Biology. 2010, 11 (14) : 2042-2049.

Salar, P. ; Semetey, O. ; Danet, J.L. ; Boudon-Padieu, E. ; Foissac, X. ‘Candidatus Phlomobacter fragariae’ and the proteobacterium associated with the low sugar content syndrome of sugar beet are related to bacteria of the arsenophonus clade detected in hemipteran insects. Phylogeny and genetic diversity of plant pathogenic gamma-3 proteobacteria. European Journal of Plant Pathology. 2010, 126 (1) : 123-127.

Séveno, M. ; Séveno-Carpentier, E. ; Voxeur, A. ; Menu-Bouaouiche, L. ; Rihouey, C. ; Delmas, F. ; Chevalier, C. ; Driouich, A. ; Lerouge, P. Characterization of a putative 3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana. Glycobiology. 2010, 20 (5) : 617-628.

Shirasawa, K. ; Isobe, S. ; Hirakawa, H. ; Asamizu, E. ; Fukuoka, H. ; Just, D. ; Rothan, C. ; Sasamoto, S. ; Fujishiro, T. ; Kishida, Y. ; Kohara, M. ; Tsuruoka, H. ; Wada, T. ; Nakamura, Y. ; Sato, S. ; Tabata, S. SNP discovery and linkage map construction in cultivated tomato.DNA research : an international journal for rapid publication of reports on genes and genomes. 2010, 17 (6) : 381-91.

Steinhauser, M.C. ; Steinhauser, D. ; Koehl, K. ; Carrari, F. ; Gibon, Y. ; Fernie, A.R. ; Stitt, M. Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiology. 2010, 153 (1) : 80-98.

Ward, J.L. ; Baker, J.M. ; Miller, S.J. ; Deborde, C. ; Maucourt, M. ; Biais, B. ; Rolin, D. ; Moing, A. ; Moco, S. ; Vervoort, J; ; Lommen, A. ; Schäfer, H. ; Humpfer, E. ; Beale, M.H. An inter-laboratory comparison demonstrates that [1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection. Metabolomics. 2010, 6 (2) : 263-273.

Zhang, N. ; Gur, A. ; Gibon, Y. ; Sulpice, R. ; Flint-Garcia, S. ; McMullen, M.D. ; Stitt, M. ; Buckler, E.S. Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity. Plos One. 2010, 5 (4) : e9991/1-9.

2009

Abdul Razzak, A. ; Guiraud, T. ; Peypelut, M. ; Walter, J. ; Houvenaghel, M.C. ; Candresse, T. ; Le Gall, O. ; German-Retana, S. Involvement of the cylindrical inclusion (CI) protein in the overcoming of an eIF4E-mediated resistance against Lettuce mosaic potyvirus. Molecular Plant Pathology. 2009, 10 (1) : 109-113.

 Biais, B. ; Allwood, W. ; Deborde, C. ; Xu, Y. ; Maucourt, M. ; Beauvoit, B. ; Dunn, W.B. ; Jacob, D. ; Goodacre, R.R. ; Rolin, D. ; Moing, A. 1H NMR, GC−EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon. Analytical Chemistry. 2009, 81 (8) : 2884-2894.

Boudehri, K. ; Bendahmane, A. ; Cardinet, G. ; Troadec, C. ; Moing, A. ; Dirlewanger, E. Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach. BMC Plant Biology. 2009, 9 (59) : 14 p..

Cabasson, C. ; Bernillon, S. ; Deborde, C. La Métabolomique appliquée à l’étude de la physiologie de la tomate : démarche et perspectives. Spectra Analyse. 2009, 271 : 26-31.

Cimerman, A. ; Pacifico, D. ; Salar, P. ; Marzachi, C. ; Foissac, X. Striking diversity of vmp1, a variable gene encoding a putative membrane protein of the stolbur phytoplasma. Applied and Environmental Microbiology. 2009, 75 (9) : 2951-2957.

Deborde, C. ; Maucourt, M. ; Baldet, P. ; Bernillon, S. ; Biais, B. ; Talon, G. ; Ferrand, C. ; Jacob, D. ; Ferry-Dumazet, H. ; de Daruvar, A. ; Rolin, D. ; Moing, A. Proton NMR quantitative profiling for quality assessment of greenhouse-grown tomato fruit. Metabolomics. 2009, 5 (2) : 183-198.

Decroocq, V. ; Salvador, B. ; Sicard, O. ; Glasa, M. ; Cosson, P. ; Svanella-Dumas, L. ; Revers, F. ; Garcia, J.A. ; Candresse, T. The determinant of potyvirus ability to overcome the RTM resistance of Arabidopsis thaliana maps to the N-terminal region of the coat protein. Molecular Plant Microbe Interactions. 2009, 22 (10) : 1302-1311.

Fernandez-Trillo, F. ; van Hest, J.C.M. ; Thies, J.C. ; Michon, T. ; Weberskirch, R. ; Cameron, N.R. Reversible immobilization onto PEG-based emulsion-templated porous polymers by co-assembly of stimuli responsive polymers. Advanced Materials. 2009, 21 (1) : 55-59.

Fernandez, A.I. ; Viron, N. ; Alhagdow, M. ; Karimi, M. ; Jones, M. ; Amsellem, Z. ; Sicard, A. ; Czerednik, A. ; Angenent, G. ; Grierson, D. ; May, S. ; Seymour, G. ; Eshed, Y. ; Lemaire-Chamley, M. ; Rothan, C. ; Hilson, P. Flexible Tools for Gene Expression and Silencing in Tomato. Plant Physiology. 2009, 151 (4) : 1729-1740.

Fialova, R. ; Valova, P. ; Balakishiyeva, G. ; Danet, J.L. ; Safarova, D. ; Foissac, X. ; Navratil, M. Genetic variability of stolbur phytoplasma in annual crop and wild plant species in south Moravia. Journal of Plant Pathology. 2009, 91 (2) : 411-416.

Garcia, V. ; Stevens, R. ; Gil, L. ; Gilbert, L. ; Gest, N. ; Petit, J. ; Faurobert, M. ; Maucourt, M. ; Deborde, C. ; Moing, A. ; Poëssel, J.L. ; Jacob, D. ; Bouchet, J.P. ; Giraudel, J.L. ; Gouble, B. ; Page, D. ; Alhagdow, M. ; Massot, C. ; Gautier, H. ; Lemaire-Chamley, M. ; de Daruvar, A. ; Rolin, D. ; Usadel, B. ; Lahaye, M. ; Causse, M. ; Baldet, P. ; Rothan, C. An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato. Comptes Rendus Biologies. 2009, 332 (11) : 1007-1021.

Gharbi, I. ; Ricard, B. ; Smiti, S. ; Bizid, E. ; Brouquisse, R. Increased hexose transport in the roots of tomato plants submitted to prolonged hypoxia. Planta. 2009, 230 (2) : 441-448.

Gibon, Y. ; Pyl, E.T. ; Sulpice, R. ; Lunn, J.E. ; Höne, M. ; Günther, M. ; Stitt, M. Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell and Environment. 2009, 32 (7) : 859-874.

Gilbert, L. ; Alhagdow, M. ; Nunes-Nesi, A. ; Quéméner, B. ; Guillon, F. ; Bouchet, B. ; Faurobert, M. ; Gouble, B. ; Page, D. ; Garcia, V. ; Petit, J. ; Stevens, R. ; Causse, M. ; Fernie, A.R. ; Lahaye, M. ; Rothan, C. ; Baldet, P. GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. Plant Journal. 2009, 60 (3) : 499-508.

Hannemann, J. ; Poorter, H. ; Usadel, B. ; Bläsing, O.E. ; Finck, A. ; Tardieu, F. ; Atkin, O.K. ; Pons, T. ; Stitt, M. ; Gibon, Y. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment. 2009, 32 (9) : 1185-1200.

Hébrard, E. ; Bessin, Y. ; Michon, T. ; Longhi, Sonia ; Uversky, V.N. ; Delalande, F. ; Van Dorsselaer, A. ; Romero, P ; Walter, J. ; Declerck, N. ; Fargette, D. Intrinsic disorder in Viral Proteins Genome-Linked: experimental and predictive analyses. Virology Journal. 2009, 6 : 23.

Horchani, F. ; Khayati, H. ; Raymond, P. ; Brouquisse, R. ; Aschi-Smiti, S. Contrasted Effects of Prolonged Root Hypoxia on Tomato Root and Fruit (Solanum lycopersicum) Metabolism. Journal of Agronomy and Crop Science. 2009, 195 (4) : 313-318.

Le Gall, O. ; Sanfaçon, H. ; Ikegami, M. ; Iwanami, T. ; Jones, T. ; Karasev, A. ; Lehto, K. ; Wellink, J. ; Wetzel, T. ; Yoshikawa, N. Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 2009, 154 (6) : 1019.

Mahjoub, A. ; Hernould, M. ; Joubès, J. ; Decendit, A. ; Mars, M. ; Barrieu, F. ; Hamdi, S. ; Delrot, S. Overexpression of a grapevine R2R3-MYB factor in tomato affects vegetative development, flower morphology and flavonoid and terpenoid metabolism. Plant Physiology and Biochemistry . 2009, 47 (7) : 551-561.

Marandel, G. ; Pascal, T. ; Candresse, T. ; Decroocq, V. Quantitative resistance to Plum pox virus in Prunus davidiana P1908 linked to components of the eukaryotic translation initiation complex. Plant Pathology. 2009, 58 (3) : 425-435.

Marandel, G. ; Salava, J. ; Abbott, A. ; Candresse, T. ; Decroocq, V. Quantitative trait loci meta-analysis of Plum pox virus resistance in apricot (Prunus armeniaca L.): new insights on the organization and the identification of genomic resistance factors. Molecular Plant Pathology. 2009, 10 (3) : 347-360.

Michon, T. Incorporation ciblée d’acides aminés artificiels dans des pseudo-particules virales. Nanotechnologies Bio-Inspirées. 2009, 2 : 17.

Michon, T. Contrôle positionnel de particules virales sur membranes d’aluminium. Nanotechnologies Bio-Inspirées. 2009, 2 : 16.

Michon, T. Cascade réactionnelle catalysée par un assemblage contrôlé de trois enzymes dans un polymersome. Nanotechnologies Bio-Inspirées. 2009, 1 : 16.

Michon, T. ; Sturgis, J. Combinaison entre un virus et des nanotubes de carbone, une électrode biocomposite. Nanotechnologies Bio-Inspirées. 2009, 1 : 15.

Mounet, F. ; Moing, A. ; Garcia, V. ; Petit, J. ; Maucourt, M. ; Deborde, C. ; Bernillon, S. ; Le Gall, G. ; Colquhoun, I. ; Defernez, M. ; Giraudel, J.L. ; Rolin, D. ; Rothan, C. ; Lemaire-Chamley, M. Gene and Metabolite Regulatory Network Analysis of Early Developing Fruit Tissues Highlights New Candidate Genes for the Control of Tomato Fruit Composition and Development. Plant Physiology. 2009, 149 (3) : 1505-1528.

Nouvel, X. ; Marenda, M. ; Sirand-Pugnet, P. ; Sagne, É. ; Glew, M. ; Mangenot, S. ; Barbe, V. ; Barré, A. ; Claverol, S. ; Citti, C. Occurrence, plasticity, and evolution of the vpma gene family, a genetic system devoted to high-frequency surface variation in Mycoplasma agalactiae. Journal of Bacteriology. 2009, 191 (13) : 4111-4121.

Pacifico, D. ; Alma, A. ; Bagnoli, B. ; Foissac, X. ; Pasquini, G. ; Tessitori, M. ; Marzachi, C. Characterization of Bois noir isolates by restriction fragment length polymorphism of a Stolbur-specific putative membrane protein gene. Phytopathology. 2009, 99 (6) : 711-715.

Papura, D. ; Delmotte, F. ; Giresse, X. ; Salar, P. ; Danet, J.L. ; Van Helden, M. ; Foissac, X. ; Malembic-Maher, S. Comparing the spatial genetic structures of the Flavescence dorée phytoplasma and its leafhopper vector Scaphoideus titanus. Infection Genetics and Evolution. 2009, 9 (5) : 867-876.

Pelletier, C. ; Salar, P. ; Gillet, J. ; Cloquemin, G. ; Very, P. ; Foissac, X. ; Malembic-Maher, S. Triplex real-time PCR assay for sensitive and simultaneous detection of grapevine phytoplasmas of the 16Srv and 16SrXII-A groups with an endogenous analytical control. Vitis. 2009, 48 (2) : 87-95.

Pereyre, S. ; Sirand-Pugnet, P. ; Beven, L. ; Charron, A. ; Renaudin, H. ; Barré, A. ; Avenaud, P. ; Jacob, D. ; Couloux, A. ; Barbe, V. ; de Daruvar, A. ; Blanchard, A. ; Bébéar, C. Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas. Plos Genetics. 2009, 5 (10) : e1000677.

Piques, M. ; Schulze, W.X. ; Höhne, M. ; Usadel, B. ; Gibon, Y. ; Rohwer, J. ; Stitt, M. Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology. 2009, 5 : 314 : 1-17.

Raffaele, S. ; Bayer, E. ; Lafarge, D. ; Cluzet, S. ; German-Retana, S. ; Boubekeur, T. ; Leborgne-Castel, N. ; Carde, J.P. ; Lherminier, J. ; Noirot, E. ; Satiat-Jeunemaître, B. ; Laroche-Traineau, J. ; Moreau, P. ; Ott, T. ; Maule, A.J. ; Reymond, P. ; Simon-Plas, F. ; Farmer, E.E. ; Bessoule, J.J. ; Mongrand, S. Remorin, a solanaceae protein resident in membrane rafts and plasmodesmata, impairs Potato virus X movement. Plant Cell. 2009, 21 (5) : 1541-1555.

Revers, F. Apport des études transcriptomiques dans la compréhension des interactions plante/virus. 11. Journées francophones de virologie ; 2009/04/23-24 ; Paris (FRA). Virologie. 2009, 13 (n° spécial) : S5.

Sanfaçon, H. ; Wellink, J. ; Le Gall, O. ; Karasev, A. ; van der Vlugt, R. ; Wetzel, T. Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus. Archives of Virology. 2009, 154 (5) : 899-907.

Séveno, M. ; Voxeur, A. ; Rihouey, C. ; Wu, A.M. ; Ishii, T. ; Chevalier, C. ; Ralet, M.C. ; Driouich, A. ; Marchant, A. ; Lerouge, P. Structural characterisation of the pectic polysaccharide rhamnogalacturonan II using an acidic fingerprinting methodology. Planta. 2009, 230 (5) : 947-957.

Ulubas Serce, C. ; Candresse, T. ; Svanella-Dumas, L. ; Krisbai, L. ; Gazel, M. ; Caglayan, K. Further characterization of a new recombinant group of Plum pox virus isolates, PPV-T, found in orchards in the Ankara province of Turkey. Virus Research. 2009, 142 (1-2) : 121-126.

Wang, H. ; Schauer, N. ; Usadel, B. ; Frasse, P. ; Zouine, M. ; Hernould, M. ; Pech, J.C. ; Fernie, A.R. ; Bouzayen, M. Regulatory features underlying pollination-dependent and -independent tomato fruit set revealed by transcript and primary metabolite profiling. Plant Cell. 2009, 21 (5) : 1428-1452.

Wulff, N.A. ; Eveillard, S. ; Foissac, X. ; Ayres, A.J. ; Bové, J.M. rRNA operons and genome size of ‘Candidatus Liberibacter americanus’, a bacterium associated with citrus huanglongbing in Brazil. International Journal of Systematic and Evolutionary Microbiology. 2009, 59 (8) : 1984-1991.

2008

Ayres, A.J. ; Lopes, S.A. ; Bassanezi, R.B. ; Yamamoto, P.T. ; Belasque Junior, J. ; Teixeira, D.C. ; Wulff, N.A. ; Bové, J.M. Control of citrus yellow shoot disease (Huanlongbing) in South and North America. ICCP 2008, 9. International congress of plant pathology ; 2008/08/24-29 ; Torino (ITA). Journal of Plant Pathology. 2008, 90 (2 Supplement) : S2.44.

Baures, I. ; Candresse, T. ; Leveau, A. ; Bendahmane, A. ; Sturbois, B. The Rx Gene Confers Resistance to a Range of Potexviruses in Transgenic Nicotiana Plants. Molecular Plant Microbe Interactions. 2008, 21 (9) : 1154-1164.

Blanc, S. ; Uzest, M. ; Candresse, T. ; Drucker, M. ; Fereres, A. ; Gargani, D. ; Garzo, E. ; Hébrard, E. Une protéine clé pour la transmission d’un virus de plante à la pointe des stylets de l’insecte vecteur. Virologie. 2008, 12 (1) : 70-72.

Breton, M. ; Duret Nurbel, S. ; Berho, N. ; Renaudin, J. Spiroplasma-host relationships : plasmids and insect-transmission of Spiroplasma citri. 9. International congress of plant pathology - ICCP 2008 ; 2008/08/24-29 ; Torino (ITA). Journal of Plant Pathology. 2008, 90 (2 Supplement) : 51.

Breton, M. ; Duret, S. ; Arricau-Bouvery, N. ; Beven, L. ; Renaudin, J. Characterizing the replication and stability regions of Spiroplasma citri plasmids identifies a novel replication protein and expands the genetic toolbox for plant-pathogenic spiroplasmas. Microbiology SGM. 2008, 154 (10) : 3232-3244.

Capote, N. ; Pérez-Panadés, J. ; Monzó, César ; Carbonell, E. ; Urbaneja, A. ; Scorza, R. ; Ravelonandro, M. ; Cambra, M. Assessment of the diversity and dynamics of Plum pox virus and aphid populations in transgenic european plums under mediterranean conditions. Transgenic Research. 2008, 17 (3) : 367-377.

Colombie, S. ; Latrille, E. ; Sablayrolles, J.M. Interest of on-line monitoring electrical conductivity during wine fermentation. European Food Research and Technology. 2008, 226 (6) : 1553-1557.

Cossegal, M. ; Chambrier, P. ; Mbelo, S. ; Balzergue, C. ; Martin Magniette, M.L. ; Moing, A. ; Deborde, C. ; Guyon, V. ; Perez, P. ; Rogowsky, P. Transcriptional and metabolic adjustments in ADP-Glucose Pyrophosphorylase-Deficient bt2 maize kernels. Plant Physiology. 2008, 146 (4) : 1553-1570.

Cvrkovic, T. ; Jovic, J. ; Mitrovic, M. ; Petrovic, A. ; Krnjajic, S. ; Malembic-Maher, S. ; Tosevski, I. First report of alder yellows phytoplasma on common alder (Alnus glutinosa) in Serbia. Plant Pathology. 2008, 57 (4) : 773.

Delmas, F. ; Séveno, M. ; Northey, J.G.B. ; Hernould, M. ; Lerouge, P. ; McCourt, P. ; Chevalier, C. The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation. Journal of Experimental Botany. 2008, 59 (10) : 2639-2647.

Djebali, W. ; Gallusci, P. ; Polge, C. ; Boulila, L. ; Galtier, N. ; Raymond, P. ; Chaibi, W. ; Brouquisse, R. Modifications in endopeptidase and 20S proteasome expression and activities in cadmium treated tomato (Solanum lycopersicum L.) plants. Planta. 2008, 227 (3) : 625-639.

Eveillard, S. ; Teixeira, D.C. ; Bove, J. Huanglongbing disease of citrus and the genus Candidatus Liberibacter. 9. International congress of plant pathology - ICCP 2008 ; 2008/08/24-29 ; Torino (ITA). Journal of Plant Pathology. 2008, 90 (2 Supplement) : 43.

Fernandez-Trillo, F. ; van Hest, J.C.M. ; Thies, J.C. ; Michon, T. ; Weberskirch, R. ; Cameron, N.R. Fine-tuning the transition temperature of a stimuli-responsive polymer by a simple blending procedure. Chemical Communications. 2008,  : 2230-2232.

German-Retana, S. ; Walter, J. ; Doublet, B. ; Roudet-Tavert, G. ; Nicaise, V. ; Lecampion, C. ; Houvenaghel, M.C. ; Robaglia, C. ; Michon, T. ; Le Gall, O. Mutational analysis of plant cap-binding protein eIF4E reveals key amino acids involved in biochemical functions and potyvirus infection. Journal of Virology. 2008, 82 (15) : 7601-7612.

German-Retana, S. ; Walter, J. ; Le Gall, O. Lettuce mosaic virus: from pathogen diversity to host interactors. Molecular Plant Pathology. 2008, 9 (2) : 127-136.

Horchani, F. ; Gallusci, P. ; Baldet, P. ; Cabasson, C. ; Maucourt, M. ; Rolin, D. ; Aschi Smiti, S. ; Raymond, P. Prolonged root hypoxia induces ammonium accumulation and decreases the nutritional quality of tomato fruits. Journal of Plant Physiology. 2008, 165 (13) : 1352-1359

Janis, C. ; Bischof, D. ; Gourgues, G. ; Frey, J. ; Blanchard, A. ; Sirand-Pugnet, P. Unmarked insertional mutagenesis in the bovine pathogen Mycoplasma mycoides subsp. mycoides SC: characterization of a lppQ mutant. Microbiology SGM. 2008, 154 (8) : 2427-2436.

Julio, E. ; Laporte, F. ; Reis, S. ; Rothan, C. ; Dorlhac de Borne, F. Reducing the content of nornicotine in tobacco via targeted mutation breeding. Molecular Breeding. 2008, 21 (3) : 369-381.

Kundu, J.K. ; Briard, P. ; Hily, J.M. ; Ravelonandro, M. ; Scorza, R. Role of the 25–26 nt siRNA in the resistance of transgenic Prunus domestica graft inoculated with plum pox virus. Virus Genes. 2008, 36 (1) : 215-220.

Le Gall, O. ; Christian, P. ; Fauquet, C.M. ; King, A.M.Q. ; Knowles, N.J. ; Nakashima, N. ; Stanway, G. ; Gorbalenya, A.E. Picornavirales , a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture. Archives of Virology. 2008, 153 (4) : 715-727.

Malembic-Maher, S. ; Constable, F. ; Cimerman, A. ; Arnaud, G. ; Carle, P. ; Foissac, X. ; Boudon, E. A chromosome map of the Flavescence dorée phytoplasma. Microbiology SGM. 2008, 154 (5) : 1454-1463.

Marais, A. ; Faure, C. ; Svanella-Dumas, L. ; Candresse, T. First report of Cherry virus A in Prunus mume in China. Plant Disease. 2008, 92 (11) : 1589.

Mortain-Bertrand, A. ; Stammitti, L. ; Telef, N. ; Colardelle, P. ; Brouquisse, R. ; Rolin, D. ; Gallusci, P. Effects of exogenous glucose on carotenoid accumulation in tomato leaves. Physiologia Plantarum. 2008, 134 (2) : 246-256.

Polak, J. ; Pivalova, J. ; Kundu, J.K. ; Jokes, M. ; Scorza, R. ; Ravelonandro, M. Behaviour of transgenic plum pox virus-resistant Prunus domestica L. clone C-5 grown in the open field under a high and permanent infection pressure of the PPV-Rec strain. European meeting on Plum pox : field and laboratory-based findings ; 2007/09/24-28 ; Pula (ITA). Journal of Plant Pathology. 2008, 90 (Suppl.1 - Plum Pox) : S1.33-S1.36.

Poupard, P. ; Bernillon, S. ; Guyot, S. ; Renard, C. Characterisation by liquid chromatography coupled to electrospray ionisation ion trap mass spectrometry of phloroglucinol and 4-methylcatechol oxidation products to study the reactivity of epicatechin in an apple juice model system. Journal of Chromatography A. 2008, 1179 : 168-181.

Ravelonandro, M. Efficacité de la transgenèse pour lutter contre le virus de la sharka. Sélectionneur Français. 2008, 57 : 39-50.

Ravelonandro, M. ; Vrient, A. ; Briard, P. ; Masson, M. Controversial considerations between nucleotide diversity of the 3’ terminal region of plum pox virus and differences in viral serotypes. Journal of Plant Pathology. 2008, 90 (Suppl. 1 - Plum Pox) : S1.47-S1.56.

Rueda, P. ; Balabanian, K. ; Lagane, B. ; Staropoli, I. ; Chow, K. ; Levoye, A. ; Laguri, C. ; Sadir, R. ; Delaunay, T. ; Izquierdo, E. ; Pablos, J.L. ; Lendinez, E. ; Caruz, A. ; Franco, D. ; Baleux, F. ; Lortat-Jacob, H. ; Arenzana-Seisdedos, F. The CXCL12γ chemokine displays unprecedented structural and functional properties that make it a paradigm of chemoattractant proteins. Plos One. 2008, 3 (7) : e2543p1-e2543p12

Saillard, C. ; Carle, P. ; Duret Nurbel, S. ; Henri, R. ; Killiny, N. ; Carrere, S. ; Gouzy, J. ; Bove, J. ; Renaudin, J. ; Foissac, X. The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome. BMC Genomics. 2008, 9 : 195p1-195p13.

Sicard, A. ; Hernould, M. ; Chevalier, C. The INHIBITOR OF MERISTEM ACTIVITY (IMA) protein: The nexus between cell division, differentiation and hormonal control of development. Plant Signaling and Behavior. 2008, 3 (10) : 908-910.

Sicard, A. ; Petit, J. ; Mouras, A. ; Chevalier, C. ; Hernould, M. Meristem activity during flower and ovule development in tomato is controlled by the mini zinc finger gene INHIBITOR OF MERISTEM ACTIVITY. Plant Journal. 2008, 55 (3) : 415-427.

Sicard, O. ; Loudet, O. ; Keurentjes, J.J.B. ; Candresse, T. ; Le Gall, O. ; Revers, F. ; Decroocq, V. Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana. Molecular Plant Microbe Interactions. 2008, 21 (2) : 198-207.

Sicard, O. ; Marandel, G. ; Soriano, J.M. ; Lalli, D.A. ; Lambert, P. ; Salava, J. ; Badenes, M.L. ; Abbott, A. ; Decroocq, V. Flanking the major Plum pox virus resistance locus in apricot with co-dominant markers (SSRs) derived from candidate resistance genes. Tree Genetics and Genomes. 2008, 4 (2) : 359-365.

Teixeira, D.C. ; Eveillard, S. ; Sirand-Pugnet, P. ; Wulff, A. ; Saillard, C. ; Bove, J. ; Ayres, A.J. The tufB-secE-nusG-rplKAJL-rpoB gene cluster of the liberibacters: sequence comparisons, phylogeny and speciation. International Journal of Systematic and Evolutionary Microbiology. 2008, 58 (6) : 1414-1421.

Teixeira, D.C. ; Wulff, N.A. ; Martins, E.C. ; Kitajima, E.W. ; Bassanezi, R. ; Ayres, A.J. ; Eveillard, S. ; Saillard, C. ; Bove, J. A phytoplasma closely related to the pigeon pea witches’-broom phytoplasma (16Sr IX) is associated with citrus huanglongbing symptoms in the state of São Paulo, Brazil. Phytopathology. 2008, 98 (9) : 977-984.

Teixeira, D.C. ; Saillard, C. ; Couture, C. ; Martins, E.C. ; Wulff, N.A. ; Eveillard-Jagoueix, S. ; Yamamoto, P.T. ; Ayres, A.J. ; Bové, J.M. Distribution and quantification of Candidatus liberibacter americanus, agent of huanglongbing disease of citrus in São Paulo State, Brasil, in leaves of an affected sweet orange tree as determined by PCR. Molecular and Cellular Probes. 2008, 22 (3) : 139-150.

Teyssier, E. ; Bernacchia, G. ; Maury, S. ; How Kit, A. ; Stammitti, L. ; Rolin, D. ; Gallusci, P. Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening. Planta. 2008, 228 (3) : 391-399.

Yaya, A. ; Manso-Silvan, L. ; Blanchard, A. ; Thiaucourt, F. Genotyping of Mycoplasma mycoides subsp. mycoides SC by multilocus sequence analysis allows molecular epidemiology of contagious bovine pleuropneumonia. Veterinary Research. 2008, 39 (2) : 14.

Youssef, F. ; Marais, A. ; Candresse, T. Partial genome sequence of Bidens mottle virus sheds light on its taxonomy. Archives of Virology. 2008, 153 (1) : 227-228.

Zagrai, I. ; Capote, N. ; Ravelonandro, M. ; Cambra, M. ; Zagrai, L. ; Scorza, R. Plum pox virus silencing of C5 transgenic plums is stable under challenge inoculation with heterologous viruses. European meeting on Plum pox : field and laboratory-based findings ; 2007/09/24-28 ; Pula (ITA). Journal of Plant Pathology. 2008, 90 (suppl. 1 - Plum Pox) : S1.63-S1.71

2007

Alhagdow, M. ; Mounet, F. ; Gilbert, L. ; Nunes-Nesi, A. ; Garcia, V. ; Just, D. ; Petit, J. ; Beauvoit, B. ; Fernie, A.R. ; Rothan, C. ; Baldet, P. Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato. Plant Physiology. 2007, 145 (4) : 1408-1422.

Allen, E. ; Hooks, M. ; Moing, A. ; Marcourt, M. ; Tomos, D. ; Rolin, D. ; Ebbels, T. Metabolite regulation of gene expression during the heterotrophic to autotrophic transition in developing seedling of Arabidopsis. Annual main meeting of the Society for Experimental Biology ; 2007/03/31-2007/04/04 ; Glasgow (GBR). Comparative Biochemistry and Physiology A Molecular and Integrative Physiology. 2007, 146 (4 Supplement 1) : S252.

Alonso, A.P. ; Raymond, P. ; Hernould, M. ; Rondeau, C. ; de Graaf, A. ; Chourey, P. ; Lahaye, M. ; Shachar-Hill, Y. ; Rolin, D. ; Dieuaide Noubhani, M. A metabolic flux analysis to study the role of sucrose synthase in the regulation of the carbon partitioning in central metabolism in maize root tips. Metabolic Engineering. 2007, 9 (5-6) : 419-432.

Alonso, A.P. ; Raymond, P. ; Rolin, D. ; Dieuaide Noubhani, M. Substrate cycles in the central metabolism of maize root tips under hypoxia. Phytochemistry. 2007, 68 (16-18) : 2222-2231.

Arnaud, G. ; Malembic-Maher, S. ; Salar, P. ; Bonnet, P. ; Maixner, M. ; Marcone, C. ; Boudon, E. ; Foissac, X. Multilocus sequence typing confirms the close genetic inter-relatedness between three distinct flavescence doree phytoplasma strain clusters and group 16SrV phytoplasmas infecting grapevine and alder in Europe. Applied and Environmental Microbiology. 2007, 73 (12) : 4001-4010.

Bidani, A. ; Nouri-Ellouz, O. ; Lakhoua, L. ; Sihachakr, D. ; Cheniclet, C. ; Mahjoub, A. ; Drira, N. ; Gargouri-Bouzid, R. Interspecific potato somatic hybrids between Solanum berthaultii and Solanum tuberosum L. showed recombinant plastome and improved tolerance to salinity. Plant Cell Tissue and Organ Culture. 2007, 91 (3) : 179-189.

Boukhris-Bouhachem, S. ; Chabbouh, N. ; Harbi, M. ; Danet, J.L. Les cicadiaires vecteurs potentiels de phytopathogènes en vignoble tunisien (Hemiptera : Cicadomorpha : Fulgoromorpha). Annales de la Société Entomologique de France. 2007, 43 (2) : 159-163.

Bové, J.M. ; Ayres, A.J. Etiology of three recent diseases of citrus in Sao Paulo State: Sudden death, variegated chlorosis and huanglongbing. IUBMB Life. 2007, 59 (4-5) : 346-354.

Brouquisse, R. ; Rolin, D. ; Cortès, S. ; Gaudillère, M. ; Evrard, A. ; Roby, C. A metabolic study of the regulation of proteolysis by sugars in maize root tips: effects of glycerol and dihydroxyacetone. Planta. 2007, 225 (3) : 693-709.

Candresse, T. Jawaid A. Khan and Jeanne Dijkstra (eds), Handbook of plant virology. The Haworth Press Inc., USA, 2004, 452 pp, US$ 69.95, ISBN 10-1-56022-979-9. European Journal of Plant Pathology. 2007, 117 (2) : 197-198.

Candresse, T. ; Lot, H. ; German-Retana, S. ; Krause-Sakate, R. ; Thomas, J. ; Souche, S. ; Delaunay, T. ; Lanneau, M. ; Le Gall, O. Analysis of the serological variability of Lettuce mosaic virus using monoclonal antibodies and surface plasmon resonance technology. Journal of General Virology. 2007, 88 (9) : 2605-2610.

Candresse, T. ; Marais, A. ; Ollivier, F. ; Verdin, E. ; Blancard, D. First report of the presence of Tomato apical stunt viroid on Tomato in Senegal. Plant Disease. 2007, 91 (3) : 330.

Candresse, T. ; Svanella-Dumas, L. ; Gentit, P. ; Caglayan, K. ; Cevik, B. First report of the presence of Plum pox virus Rec strain in Turkey. Plant Disease. 2007, 91 (3) : 331.

Capote, N. ; Monzo, C. ; Urbaneja, A. ; Perez-Panades, J. ; Carbonell, E. ; Ravelonandro, M. ; Scorza, R. ; Cambra, M. Evaluación del riesgo ambiental del cultivo en campo de ciruelos europeos transgénicos sensibles y resistentes a Plum pox virus. ITEA Informacion Tecnica Economica Agraria. 2007, 103 (3) : 156-157.

Carette, N. ; Engelkamp, H. ; Akpa, E. ; Pierre, S.J. ; Cameron, N.R. ; Christianen, P.C.M. ; Maan, J.C. ; Thies, J.C. ; Weberskirch, R. ; Rowan, A.E. ; Nolte, R.J.M. ; Michon, T. ; Van Hest, J.C.M. A virus-based biocatalyst. Nature Nanotechnology. 2007, 2 (4) : 226-229.

Carle, P. ; Malembic-Maher, S. ; Foissac, X. Purification of phytoplasma DNA for sequencing the “flavescence dorée” and stolbur phytoplasma genomes. 1.International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (FRA). Bulletin of Insectology. 2007, 60 (2) : 115-116.

Choueiri, E. ; Salar, P. ; Jreijiri, F. ; El Zammar, S. ; Massaad, R. ; Abdul-Nour, H. ; Bové, J.M. ; Danet, J.L. ; Foissac, X. Occurrence and distribution of ‘Candidatus Phytoplasma trifolii’ associated with diseases of solanaceous crops in Lebanon. European Journal of Plant Pathology. 2007, 118 (4) : 411-416.

Danet, J.L. ; Bonnet, P. ; Jarausch, W. ; Carraro, L. ; Skoric, D. ; Labonne, G. ; Foissac, X. Imp and secY, two new markers for MLST (Multilocus Sequence Typing) in the 16SrX phytoplasma taxonomic group. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 339-340.

Decroocq, V. ; Candresse, T. Résistance génétique au virus de la sharka chez les Prunus : sélection conventionnelle et nouvelles stratégies. Innovations Agronomiques. 2007, 1 : 111-121.

Delmotte Papura, D. ; Van Helden, M. ; Giresse, X. ; Salar, P. ; Danet, J.L. ; Foissac, X. ; Malembic-Maher, S. Genetic structure of Scaphoideus titanus populations and genetic diversity of the epidemic strains of “Flavescence dorée” phytoplasma : the situation in France. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 333-334.

Fassi Fehri, L. ; Wroblewski, H. ; Blanchard, A. Activities of antimicrobial peptides and synergy with enrofloxacin against Mycoplasma pulmonis. Antimicrobial Agents and Chemotherapy. 2007, 51 (2) : 468-474.

Fernandez-Trillo, F. ; Duréault, A. ; Bayley, J.P.M. ; Van Hest, J.C.M. ; Thies, J.C. ; Michon, T. ; Weberskirch, R. ; Cameron, N.R. Elastin-based side-chain polymers : Improved synthesis via RAFT and stimulus responsive behavior. Macromolecules. 2007, 40 (17) : 6094-6099.

Fuchs, M. ; Cambra, M. ; Capote, N. ; Jelkmann, W. ; Kundu, J. ; Laval, V. ; Martelli, G.P. ; Minafra, A. ; Petrovic, N. ; Pfeiffer, P. ; Pompe-Novak, M. ; Ravelonandro, M. ; Saldarelli, P. ; Stussi-Garaud, C. ; Vigne, E. ; Zagrai, I. Safety assessment of transgenic plums and grapevines expressing viral coat protein genes : new insights into real environmental impact of perennial plants engineered for virus resistance. Journal of Plant Pathology. 2007, 89 (1) : 5-12.

Gharbi, I. ; Ricard, B. ; Rolin, D. ; Maucourt, M. ; Andrieu, M.H. ; Bizid, E. ; Smiti, S. ; Brouquisse, R. Effect of hexokinase activity on tomato root metabolism during prolonged hypoxia. Plant Cell and Environment. 2007, 30 (4) : 508-517.

Gonzalez, N. ; Gevaudant, F. ; Hernould, M. ; Chevalier, C. ; Mouras, A. The cell cycle-associated protein kinase WEE1 regulates cell size in relation to endoreduplication in developing tomato fruit. Plant Journal. 2007, 51 (4) : 642-655.

Hily, J.M. ; Ravelonandro, M. ; Damsteegt, V. ; Bassett, C. ; Petri, C. ; Liu, Z. ; Scorza, R. Plum pox virus coat protein gene intron-hairpin-RNA (ihpRNA) constructs provide resistance to Plum pox virus in Nicotiana benthamiana and Prunus domestica. Journal of the American Society for Horticultural Science. 2007, 132 (6) : 850-858.

Jadao, A.S. ; Krause-Sakate, R. ; Liberti, D. ; Pavan, M.A. ; Echer, M.M. ; Svanella-Dumas, L. ; Zerbini, F.M. ; Candresse, T. ; Le Gall, O. Further characterization of two sequiviruses infecting lettuce and development of specific RT-PCR primers. Archives of Virology. 2007, 152 (5) : 999-1007.

Janis, C. ; Blanchard, A. Mycoplasmes chez les animaux, petite toux ou peste ?. Bulletin des GTV. 2007, 39 : 15-23.

Khelil, A. ; Menu, T. ; Ricard, B. Adaptive response to salt involving carbohydrate metabolism in leaves of a salt-sensitive tomato cultivar. Plant Physiology and Biochemistry. 2007, 45 (8) : 551-559.

Krause-Sakate, R. ; Richard-Forget, F. ; Redondo, E. ; Pavan, M.A. ; Zerbini, F.M. ; Candresse, T. ; Le Gall, O. Quantitative control of Lettuce mosaic virus fitness and host defence inhibition by P1-HcPro. Summa Phytopathologica. 2007, 33 (2) : 119-123.

Le Gall, O. ; Sanfaçon, H. ; Ikegami, M. ; Iwanami, T. ; Jones, T. ; Karasev, A. ; Lehto, K. ; Wellink, J. ; Wetzel, T. ; Yoshikawa, N. Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 2007, 152 (9) : 1767-1774.

Le Gall, O. ; Svanella-Dumas, L. ; Fakhfakh, H. ; Marrakchi, M. ; Candresse, T. Frequent occurrence of Lettuce mosaic virus in Cape daisy (Osteospermum sp.) in Tunisia. Plant Disease. 2007, 91 (11) : 1514.

Lebouteiller, B. ; Gousset-Dupont, A. ; Pierre, J.N. ; Bleton, J. ; Tchapla, A. ; Maucourt, M. ; Moing, A. ; Rolin, D. ; Vidal, J. Physiological impacts of modulating phosphoenolpyruvate carboxylase levels in leaves and seeds of Arabidopsis thaliana. Plant Science. 2007, 172 (2) : 265-272.

Machenaud, J. ; Henri, R. ; Dieuaide Noubhani, M. ; Pracros, P. ; Renaudin, J. ; Eveillard, S. Gene expression and enzymatic activity of invertases and sucrose synthase in Spiroplasma citri or stolbur phytoplasma infected plants. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 219-220.

Malembic-Maher, S. ; Constable, F. ; Cimerman, A. ; Arnaud, G. ; Carle, P. ; Foissac, X. ; Boudon, E. Progress towards a chromosome map of the “flavescence dorée” phytoplasma. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 117-118.

Malembic-Maher, S. ; Salar, P. ; Vergnes, D. ; Foissac, X. Detection and diversity of “flavescence dorée” related phytoplasmas in alders surrounding infected vineyards in Aquitaine (France). 1. International Phytoplasmologist Working Group Meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 329-330.

Mathioudakis, M.M. ; Candresse, T. ; Katis, N.I. First report of Apple chlorotic leaf spot virus in quince in Greece. Plant Disease. 2007, 91 (4) : 462.

Mounet, F. ; Lemaire, M. ; Maucourt, M. ; Cabasson, C. ; Giraudel, J.L. ; Deborde, C. ; Lessire, R. ; Gallusci, P. ; Bertrand, A. ; Gaudillere, M. ; Rothan, C. ; Rolin, D. ; Moing, A. Quantitative metabolic profiles of tomato flesh and seeds during fruit development: complementary analysis with ANN and PCA. Metabolomics. 2007, 3 (3) : 273-288.

Nicaise, V. ; Gallois, J.L. ; Chafiai, F. ; Allen, L.M. ; Schurdi-Levraud, V. ; Browning, K.S. ; Candresse, T. ; Caranta, C. ; Le Gall, O. ; German-Retana, S. Coordinated and selective recruitment of eIF4E and eIF4G factors for potyvirus infection in Arabidopsis thaliana. FEBS Letters. 2007, 581 (5) : 1041-1046.

Paccalet, T. ; Bardor, M. ; Rihouey, C. ; Delmas, F. ; Chevalier, C. ; D’Aoust, M.A. ; Faye, L. ; Vézina, L. ; Gornord, V. ; Lerouge, P. Engineering of a sialic acid synthesis pathway in transgenic plants by expression of bacterial Neu5Ac-synthesizing enzymes. Plant Biotechnology Journal. 2007, 5 (1) : 16-25.

Pacifico, D. ; Foissac, X. ; Veratti, F. ; Marzachi, C. Genetic diversity of Italian and French “bois noir” phytoplasma isolates. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 345-346.

Pereira, G.E. ; Gaudillere, J.P. ; Van Leeuwen, C. ; Hilbert, G. ; Maucourt, M. ; Deborde, C. ; Moing, A. ; Rolin, D. 1H-NMR metabolic profiling of wines from three cultivars, three soil types and two contrasting vintages. Journal International des Sciences de la Vigne et du Vin. 2007, 42 (2) : 103-109

Pracros, P. ; Hernould, M. ; Teyssier, E. ; Eveillard, S. ; Renaudin, J. Stolbur phytoplasma-infected tomato showed alteration of SlDEF methylation status and deregulation of methyltransferase genes expression. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 221-222

Rippa, S. ; Adenier, H. ; Derbaly, M. ; Beven, L. The Peptaibol Alamethicin induces an rRNA-Cleavage-Associated death in Arabidopsis thaliana. Chemistry and Biodiversity. 2007, 4 (6) : 1360-1373

Roudet, G. ; Michon, T. ; Walter, J. ; Delaunay, T. ; Redondo, E. ; Le Gall, O. Central domain of a potyvirus VPg is involved in the interaction with the host translation initiation factor eIF4E and the viral protein HcPro. Journal of General Virology. 2007, 88 (3) : 1029-1033.

Salar, P. ; Choueiri, E. ; Jreijiri, F. ; El Zammar, S. ; Danet, J.L. ; Foissac, X. Phytoplasmas in Lebanon: characterization of ‘Candidatus Phytoplasma pyri’ and stolbur phytoplasma respectively associated with pear decline and grapevine “bois noir” diseases. 1. International Phytoplasmologist Working Group meeting ; 2007/11/12-15 ; Bologne (ITA). Bulletin of Insectology. 2007, 60 (2) : 357-358.

Sirand-Pugnet, P. ; Citti, C. ; Barré, A. ; Blanchard, A. Evolution of mollicutes : down a bumpy road with twists and turns. Research in Microbiology. 2007, 158 (10) : 754-766.

Sirand-Pugnet, P. ; Lartigue, C. ; Marenda, Marc ; Jacob, D. ; Barré, A. ; Barbe, V. ; Schenowitz, C. ; Mangenot, S. ; Couloux, A. ; Segurens, B. ; de Daruvar, A. ; Blanchard, A. ; Citti, C. Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome. Plos Genetics. 2007, 3 (5) : e75.

Stevens, R. ; Buret, M. ; Duffé, P. ; Garchery, C. ; Baldet, P. ; Rothan, C. ; Causse, M. Candidate genes and quantitative trait loci affecting fruit ascorbic acid content in three tomato populations. Plant Physiology. 2007, 143 (4) : 1943-1953.

Terlizzi, F. ; Babini, A.R. ; Lanzoni, C. ; Credi, R. ; Foissac, X. ; Salar, P. First report of a γ 3-proteobacterium associated with diseased strawberries in Italy. Plant Disease. 2007, 91 (12) : 1688.

Teycheney, P.Y. ; Acina, I. ; Lockhart, B.E.L. ; Candresse, T. Detection of Banana mild mosaic virus and Banana virus X by polyvalent degenerate oligonucleotide RT-PCR (PDO-RT-PCR). Journal of Virological Methods. 2007, 142 (1-2) : 41-49.

Uhart, M. ; Sirand-Pugnet, P. ; Labarère, J. Evolution of mitochondrial SSU-rDNA variable domain sequences and rRNA secondary structures, and phylogeny of the Agrocybe aegerita multispecies complex. Research in Microbiology. 2007, 158 (3) : 203-212.

Uzest, M. ; Gargani, D. ; Drucker, M. ; Hébrard, E. ; Garzo, E. ; Candresse, T. ; Fereres, A. ; Blanc, S. A protein key to plant virus transmission at the tip of the insect vector stylet. Proceedings of the National Academy of Sciences of the United States of America. 2007, 104 (46) : 17959-17964.