CV

• Formation - Diplômes :
  1989 DUT Chimie. IUT de Poitiers.
  1993 Ingénieur Chimiste de l’Ecole des Hautes études des Industries Chimiques de Strasbourg (ENSC EHICS)
  1994 DEA Physico-Chimie et Qualité des Bio-Produits. Université de Nantes
  1998 Doctorat ENSAR, mention Biochimie, Biologie Moléculaire & Cellulaire. ENSA de Rennes
• Parcours :
  1998 – 2003 : Centre INRA Rennes, UR Laboratoire de Recherches de Technologie Laitière. Equipe Microbiologie.
  IR RMN et métabolisme microbien
  2003 - : Centre INRAE Nouvelle Aquitaine - Bordeaux, UMR Biologie du Fruit et Pathologie, Equipe Métabolisme, et Plateforme Métabolome Bordeaux
  IR RMN et métabolisme
  Responsable Technique Plateforme Métabolome Bordeaux (2007 – 2018)

CV en ligne sur le Portail HAL-INRAE : https://cv.archives-ouvertes.fr/catherine-deborde

CONTACT

Tél. 05 57 12 25 30 / 25 78
Email : catherine-deborde-at-inrae.fr

PUBLICATIONS

Liste complète des publications sur le Portail HAL-INRAE

Sélection de Communications orales (* orateur)

Deborde C*, Jacob D, Fontaine J-X, Molinié R, Roch L, Clavé A, Gibon Y, Batsale M, Mesnard F, Moing A. An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies. 2^nd International Plant Spectroscopy Conference (IPSC), Berlin, Germany, March 24-28, 2019. Conférence invitée

Deborde C*, Jacob D, Roques S, Roch L, Clavé A, Batsale M, Moing A. (2019) NMR-based metabolomics at Bordeaux Metabolome Facility: 4 short stories. A Franco-Israeli Symposium in Magnetic Resonance. The David Lopatie Conference Centre, Weizmann Institute of Science, Rehovot, Israel, January 20-22, 2019. Conférence invitée

Deborde C*, Madji Hounoum B, Maucourt M, Jacob D, Terrier F, Corraze G, Médale F, Fauconneau B, Moing A. NMR metabolomics: a useful tool in aquaculture feed development. 14^th International Conference on the Applications of Magnetic Resonance in Food Science, MRFood2018, Rennes, France, September 17-21, 2018.

Deborde C*, Madji Hounoum B, Jacob D, Maucourt M, Roques S, Terrier F, Corraze G, Médale F, Skiba-Cassy S, Moing A, Fauconneau B. NMR-based metabolomics workflow for quality and effect assessment of alternative plant-based diets in rainbow trout. 11^èmes JS du Réseau Francophone de Métabolomique et Fluxomique, Liège, Belgique 23-25 Mai, 2018. Conférence invitee.

Conférence MOOC métabolomique : www.dailymotion.com/video/x6mt32

Sélection de Publications

RMN

Pagés G, Deborde C, Lemaire-Chamley M, Moing A, Bonny J-M (2020) MRSI vs CEST MRI to understand tomato metabolism in ripening fruit: Is there a better contrast? Analytical and Bioanalytical Chemistry in press.

Dey A, Charrier B, Martineau E, Deborde C, Gandriau E, Moing A, Jacob D, Eshchenko, Schnell M, Melzi R, Kurzbach D, Ceillier M, Chappuis Q, Cousin S, Kempf J, Jannin S, Dumez J-B, Giraudeau P (2020) Hyperpolarized NMR Metabolomics at Natural 13C Abundance. Analytical Chemistry, 92: 14867-14871. DOI:10.1021/acs.analchem.0c03510

Deborde C, Fontaine J-X, Jacob D, Botana A, Nicaise V, Richard-Forget F, Lecomte S, Decourtil C, Hamade K, Mesnard F, Moing A, Molinié R (2019) Optimizing 1D ¹H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing. Metabolomics, 15:28, DOI: 10.1007/s11306-019-1488-3 – associated open data DOI:10.15454/ERCVZR

Deborde C, Moing A, Roch L, Jacob D, Rolin D, Giraudeau P (2017) Plant metabolism as studied by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy, 102-103: 61-97. DOI: 10.1016/j.pnmrs.2017.05.001

Jacob D, Deborde C, Lefebvre M, Maucourt M, Moing A (2017) NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics 13:36, DOI: 10.1007/s11306-017-1178-y

Bornet A, Maucourt M, Deborde C, Jacob D, Milani J, Vuichoud B, Ji X, Dumez J-N, Moing A, Bodenhausen G, Jannin S, Giraudeau P (2016) Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics. Analytical chemistry 88:6179-6183. DOI: 10.1021/acs.analchem.6b01094

Dumez J-N, Milani J, Vuichoud B, Bornet A, Lalande-Martin J, Tea I, Yon M, Maucourt M, Deborde C, Moing A, Frydman L, Bodenhausen G, Jannin S, Giraudeau P (2015) Hyperpolarized NMR of plant and cancer cell extracts at natural abundance. Analyst 140 :5860-5863. DOI : 10.1039/c5an01203a

Jézéquel T, Deborde C, Maucourt M, Zhendre V, Moing A, Giraudeau P (2015) Absolute quantification of metabolites in tomato fruit extracts by fast 2D NMR. Metabolomics 11:1131-1142. DOI: 10.1007/s11306-015-0780-0

Jacob D, Deborde C, Moing A (2013) An efficient spectra processing method for metabolite identification from ¹H-NMR metabolomics data. Analytical and Bioanalytical Chemistry 405:5049-5061. DOI: 10.1007/s00216-013-6852-y

Allwood JW, de Vos CHR, Moing A, Deborde C, Erban A, Kopka J, Goodacre R, Hall R (2011) Chapter sixteen - Plant metabolomics and its potential for systems biology research: background concepts, technology and methodology. In D Jameson, M Verma, HV Westerhoff, eds, Part of volume Methods in Systems Biology. Methods in Enzymology, Vol 500. Academic Press, Amsterdam, Netherlands, pp 299-336. DOI: 10.1016/B978-0-12-385118-5.00016-5

Metabolomics

Salek R, Neumann S, Schober D, Hummel J, Billiau K, Kopka J, Correa E, Reijmers T, Rosato A, Tenori L, Turano P, Marin S, Deborde C, Jacob D, Rolin D, Dartigues B, Conesa P, Haug K, Rocca-Serra P, O’Hagan S, Hao J, Vliet Mv, Sysi-Aho M, Ludwig C, Bouwman J, Cascante M, Ebbels T, Griffin JL, Moing A, Nikolski M, Oresic M, Sansone SA, Viant MR, Goodacre R, Günther UL, Hankemeier T, Luchinat C, Walther D, Steinbeck C (2015) COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 11:1587-1597. DOI: 10.1007/s11306-015-0810-y

Plant Metabolomics

Bernillon S, Maucourt M, Deborde C, Chéreau S, Jacob D, Priymenko N, Laporte B, Coumoul X, Salles B, Rogowsky P, Richard-Forget F, Moing A (2018) Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding. Metabolomics 14 :1-12, DOI : 10.1007/s11306-018-1329-9

Lamari N, Zhendre V, Urrutia M, Bernillon S, Maucourt M, Deborde C, Prodhomme D, Jacob D, Ballias P, Rolin D, Sellier H, Rabier D, Gibon Y, Giauffret C, Moing A. (2018) Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding. Metabolomics 14:132, DOI: 10.1007/s11306-018-1427-8

Deborde C, Jacob D (2014) Exploring plant primary metabolism with MeRy-B a metabolomic database and knowledge base dedicated to plant. In G Sriram, ed, Plant Metabolism: Methods and Protocols. Methods in Molecular Biology, Humana Press, vol 1083, pp 3-16.  DOI : 10.1007/978-1-62703-661-0_1

Fruit Metabolomics

Musseau C, Jorly J, Gadin S, Sørensen I, Deborde C, Bernillon S, Mauxion JP, Atienza I, Moing A, Lemaire-Chamley M, Rose JKC, Chevalier C, Rothan C, Fernandez-Lochu L, Gévaudant F (2020) The Tomato Guanylate-Binding Protein SlGBP1 Enables Fruit Tissue Differentiation by Maintaining Endopolyploid Cells in a Non-proliferative State. Plant cell DOI: tpc.00245.2020

Roch L, Prigent S, Klose H, Capko CB, Beauvoit B, Deborde C, Fouillen L, van Delft P, Jacob D, Usadel B, Dai Z, Génard M, Vercambre G, Colombié S, Moing A, Gibon Y (2020) Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species. Journal of Experimental Botany 71: 5823-5836. DOI: 10.1093/jxb/eraa302

Lemaire-Chamley M, Mounet F, Deborde C, Maucourt M, Jacob J, Moing A (2019) NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit. Metabolites 9:5, DOI:10.3390/metabo9050093

Botton A, Rasori A, Ziliotto F, Moing A, Maucourt M, Bernillon S, Deborde C, Petterle A, Varotto S, Bonghi C (2016). The peach HECATE3-like gene FLESHY plays a double role during fruit development. Plant Molecular Biology 91: 97-114. DOI: 10.1007/s11103-016-0445-z

Bénard C, Bernillon S, Biais B, Osorio S, Maucourt M, Ballias P, Deborde C, Colombié S, Cabasson C, Jacob D, Vercambre G, Gautier H, Rolin D, Génard M, Fernie AR, Gibon Y, Moing A (2015). Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany 66:3391-404. DOI: 10.1093/jxb/erv151

Bernillon S, Biais B, Deborde C, Maucourt M, Cabasson C, Gibon Y, Hansen TH, Husted S, de Vos CH, Mumm R, Jonker H, Ward JL, Miller SJ, Baker JM, Burger J, Tadmor Y, Beale MH, Schjoerring JK, Schäffer AA, Rolin D, Hall RD, Moing A (2013) Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics 9: 57-77. DOI: 10.1007/s11306-012-0429-1

Moing A, Aharoni A, Biais B, Rogachev I, Meir S, Brodsky L, Allwood JW, Erban A, Dunn WB, Kay L, de Koning S, de Vos CHR, Jonker H, Mumm R, Deborde C, Maucourt M, Bernillon S, Gibon Y, Hansen TH, Husted S, Goodacre R, Kopka J, Schjoerring JK, Rolin D, Hall R (2011) Extensive metabolic cross talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytologist 190:683-696. DOI: 10.1111/j.1469-8137.2010.03626.x

Fish nutrition metabolomics

Roques S, Deborde C, Richard N, Marchand Y, Larroquet L, Prigent S, Skiba-Cassy S, Moing A, Fauconneau B (2020) Proton-NMR Metabolomics of Rainbow Trout Fed a Plant-Based Diet Supplemented with Graded Levels of a Protein-Rich Yeast Fraction Reveal Several Metabolic Processes Involved in Growth. Journal of Nutrition 150:2268-2277, DOI: 10.1093/jn/nxaa206

Roques S, Deborde C, Richard N, Sergent L, Kurz F, Skiba-Cassy S, Fauconneau B, Moing A (2018) Characterizing alternative feeds for rainbow trout (O. mykiss) by ¹H NMR metabolomics. Metabolomics 14:155, DOI : 10.1007/s11306-018-1454-5 - associated open data DOI:10.5281/zenodo.1423124

Gatesoupe FJ, Fauconneau B, Deborde C, Madji Hounoum B, Jacob D, Moing A, Corraze G, Médale F (2018) Intestinal microbiota in rainbow trout, Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites. Aquaculture Nutrition 24:1563-1576. DOI : 10.1111/anu.12793 - associated open data DOI:10.5281/zenodo.1035257

INFORMATIONS COMPLEMENTAIRES

Co fondatrice du Réseau Français de Métabolomique et Fluxomique en 2005.
Animation et communication scientifique du RFMF (www.rfmf.fr) de 2005 à 2015.
Modératrice de la liste de diffusion 'rfmf@groupes.renater.fr' depuis sa création.
Membre d’Honneur depuis 2018

« Activities in France » In « Metabolomics across the globe » Metabolomics 2013, 9 :258-264

Base de données et de connaissances sur la métabolomique des plantes : Metabolomics Repository Bordeaux MeRy-B

Jacob D, Deborde C (2012) MeRy-B: a plant metabolomics database and knowledgebase. www.metabonews.ca/Mar2012/MetaboNews_Mar2012.htm

Member of International Society for Plant Spectroscopy (ISPS) since 2019.